Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS08445

Experiment: 150_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS08440 and AMB_RS08445 are separated by 132 nucleotidesAMB_RS08445 and AMB_RS08450 are separated by 303 nucleotides AMB_RS08440: AMB_RS08440 - amidase, at 1,805,886 to 1,807,061 _RS08440 AMB_RS08445: AMB_RS08445 - signal transduction protein, at 1,807,194 to 1,808,876 _RS08445 AMB_RS08450: AMB_RS08450 - ABC transporter substrate-binding protein, at 1,809,180 to 1,810,334 _RS08450 Position (kb) 1807 1808 1809Strain fitness (log2 ratio) -3 -2 -1 0 1at 1806.944 kb on - strandat 1806.944 kb on - strandat 1806.944 kb on - strandat 1807.019 kb on - strandat 1807.019 kb on - strandat 1807.019 kb on - strandat 1807.075 kb on + strandat 1807.075 kb on + strandat 1807.076 kb on - strandat 1807.076 kb on - strandat 1807.076 kb on - strandat 1807.112 kb on - strandat 1807.195 kb on + strandat 1807.237 kb on + strandat 1807.237 kb on + strandat 1807.237 kb on + strandat 1807.237 kb on + strandat 1807.237 kb on + strandat 1807.238 kb on - strandat 1807.240 kb on + strandat 1807.241 kb on - strandat 1807.241 kb on - strandat 1807.241 kb on - strandat 1807.241 kb on - strandat 1807.241 kb on - strandat 1807.463 kb on - strand, within AMB_RS08445at 1807.547 kb on + strand, within AMB_RS08445at 1807.585 kb on + strand, within AMB_RS08445at 1807.585 kb on + strand, within AMB_RS08445at 1807.586 kb on - strand, within AMB_RS08445at 1807.586 kb on - strand, within AMB_RS08445at 1807.669 kb on + strand, within AMB_RS08445at 1807.669 kb on + strand, within AMB_RS08445at 1807.669 kb on + strand, within AMB_RS08445at 1807.669 kb on + strand, within AMB_RS08445at 1807.669 kb on + strand, within AMB_RS08445at 1807.669 kb on + strand, within AMB_RS08445at 1807.669 kb on + strand, within AMB_RS08445at 1807.669 kb on + strand, within AMB_RS08445at 1807.669 kb on + strand, within AMB_RS08445at 1807.670 kb on - strand, within AMB_RS08445at 1807.670 kb on - strand, within AMB_RS08445at 1807.670 kb on - strand, within AMB_RS08445at 1807.670 kb on - strand, within AMB_RS08445at 1807.879 kb on + strand, within AMB_RS08445at 1808.379 kb on + strand, within AMB_RS08445at 1808.380 kb on - strand, within AMB_RS08445at 1808.386 kb on + strand, within AMB_RS08445at 1808.386 kb on + strand, within AMB_RS08445at 1808.755 kb on + strandat 1808.756 kb on - strandat 1808.914 kb on + strandat 1808.928 kb on + strandat 1808.933 kb on + strandat 1808.947 kb on + strandat 1808.948 kb on - strandat 1808.948 kb on - strandat 1808.988 kb on - strandat 1808.988 kb on - strandat 1809.096 kb on + strandat 1809.096 kb on + strandat 1809.097 kb on - strandat 1809.097 kb on - strandat 1809.097 kb on - strandat 1809.115 kb on + strandat 1809.120 kb on - strandat 1809.127 kb on + strandat 1809.127 kb on + strandat 1809.127 kb on + strandat 1809.128 kb on - strandat 1809.128 kb on - strandat 1809.128 kb on - strandat 1809.128 kb on - strandat 1809.131 kb on + strandat 1809.131 kb on + strandat 1809.131 kb on + strandat 1809.131 kb on + strandat 1809.132 kb on - strandat 1809.132 kb on - strandat 1809.132 kb on - strandat 1809.186 kb on - strandat 1809.186 kb on - strandat 1809.186 kb on - strandat 1809.186 kb on - strandat 1809.281 kb on + strandat 1809.282 kb on - strandat 1809.282 kb on - strandat 1809.282 kb on - strandat 1809.345 kb on + strand, within AMB_RS08450at 1809.345 kb on + strand, within AMB_RS08450at 1809.345 kb on + strand, within AMB_RS08450at 1809.345 kb on + strand, within AMB_RS08450at 1809.345 kb on + strand, within AMB_RS08450at 1809.345 kb on + strand, within AMB_RS08450at 1809.345 kb on + strand, within AMB_RS08450at 1809.345 kb on + strand, within AMB_RS08450at 1809.345 kb on + strand, within AMB_RS08450at 1809.345 kb on + strand, within AMB_RS08450at 1809.345 kb on + strand, within AMB_RS08450at 1809.345 kb on + strand, within AMB_RS08450at 1809.346 kb on - strand, within AMB_RS08450at 1809.346 kb on - strand, within AMB_RS08450at 1809.346 kb on - strand, within AMB_RS08450at 1809.346 kb on - strand, within AMB_RS08450at 1809.346 kb on - strand, within AMB_RS08450at 1809.346 kb on - strand, within AMB_RS08450at 1809.346 kb on - strand, within AMB_RS08450at 1809.346 kb on - strand, within AMB_RS08450at 1809.346 kb on - strand, within AMB_RS08450at 1809.346 kb on - strand, within AMB_RS08450at 1809.346 kb on - strand, within AMB_RS08450at 1809.346 kb on - strand, within AMB_RS08450at 1809.346 kb on - strand, within AMB_RS08450at 1809.346 kb on - strand, within AMB_RS08450at 1809.346 kb on - strand, within AMB_RS08450at 1809.346 kb on - strand, within AMB_RS08450at 1809.346 kb on - strand, within AMB_RS08450at 1809.405 kb on + strand, within AMB_RS08450at 1809.405 kb on + strand, within AMB_RS08450at 1809.405 kb on + strand, within AMB_RS08450at 1809.405 kb on + strand, within AMB_RS08450at 1809.405 kb on + strand, within AMB_RS08450at 1809.406 kb on - strand, within AMB_RS08450at 1809.406 kb on - strand, within AMB_RS08450at 1809.780 kb on + strand, within AMB_RS08450at 1809.780 kb on + strand, within AMB_RS08450at 1809.780 kb on + strand, within AMB_RS08450at 1809.781 kb on - strand, within AMB_RS08450at 1809.781 kb on - strand, within AMB_RS08450at 1809.781 kb on - strand, within AMB_RS08450at 1809.781 kb on - strand, within AMB_RS08450at 1809.781 kb on - strand, within AMB_RS08450at 1809.781 kb on - strand, within AMB_RS08450at 1809.781 kb on - strand, within AMB_RS08450

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_1
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1,806,944 - -0.1
1,806,944 - -0.2
1,806,944 - +0.8
1,807,019 - +1.2
1,807,019 - +0.2
1,807,019 - -0.1
1,807,075 + -0.0
1,807,075 + +0.0
1,807,076 - +1.5
1,807,076 - +0.9
1,807,076 - +0.3
1,807,112 - +0.4
1,807,195 + -1.2
1,807,237 + +1.1
1,807,237 + -0.2
1,807,237 + +0.8
1,807,237 + +0.1
1,807,237 + +0.9
1,807,238 - +0.2
1,807,240 + -0.8
1,807,241 - +0.0
1,807,241 - +0.8
1,807,241 - -0.1
1,807,241 - -0.2
1,807,241 - -0.2
1,807,463 - AMB_RS08445 0.16 -1.4
1,807,547 + AMB_RS08445 0.21 +1.1
1,807,585 + AMB_RS08445 0.23 -0.5
1,807,585 + AMB_RS08445 0.23 +0.4
1,807,586 - AMB_RS08445 0.23 +0.0
1,807,586 - AMB_RS08445 0.23 +0.1
1,807,669 + AMB_RS08445 0.28 +0.4
1,807,669 + AMB_RS08445 0.28 -0.4
1,807,669 + AMB_RS08445 0.28 -1.0
1,807,669 + AMB_RS08445 0.28 -0.3
1,807,669 + AMB_RS08445 0.28 +0.1
1,807,669 + AMB_RS08445 0.28 -0.0
1,807,669 + AMB_RS08445 0.28 -1.2
1,807,669 + AMB_RS08445 0.28 -0.1
1,807,669 + AMB_RS08445 0.28 -1.6
1,807,670 - AMB_RS08445 0.28 -0.8
1,807,670 - AMB_RS08445 0.28 -0.0
1,807,670 - AMB_RS08445 0.28 +0.2
1,807,670 - AMB_RS08445 0.28 -1.8
1,807,879 + AMB_RS08445 0.41 -0.6
1,808,379 + AMB_RS08445 0.70 +0.7
1,808,380 - AMB_RS08445 0.70 -0.3
1,808,386 + AMB_RS08445 0.71 -0.2
1,808,386 + AMB_RS08445 0.71 -0.3
1,808,755 + -2.9
1,808,756 - +0.0
1,808,914 + +0.4
1,808,928 + +0.8
1,808,933 + -3.0
1,808,947 + -0.2
1,808,948 - -0.2
1,808,948 - -0.7
1,808,988 - -0.5
1,808,988 - -1.2
1,809,096 + -0.2
1,809,096 + -0.8
1,809,097 - -1.9
1,809,097 - -1.4
1,809,097 - -0.5
1,809,115 + -0.3
1,809,120 - -2.1
1,809,127 + -0.2
1,809,127 + -0.2
1,809,127 + +0.1
1,809,128 - -1.2
1,809,128 - -0.8
1,809,128 - -1.3
1,809,128 - -0.3
1,809,131 + +0.4
1,809,131 + -1.0
1,809,131 + -0.1
1,809,131 + -0.0
1,809,132 - -1.5
1,809,132 - -1.3
1,809,132 - -1.2
1,809,186 - -2.5
1,809,186 - -0.6
1,809,186 - -1.1
1,809,186 - -1.6
1,809,281 + -1.5
1,809,282 - -1.2
1,809,282 - +0.5
1,809,282 - -0.5
1,809,345 + AMB_RS08450 0.14 -0.7
1,809,345 + AMB_RS08450 0.14 -1.4
1,809,345 + AMB_RS08450 0.14 -1.4
1,809,345 + AMB_RS08450 0.14 -1.0
1,809,345 + AMB_RS08450 0.14 -2.3
1,809,345 + AMB_RS08450 0.14 -0.9
1,809,345 + AMB_RS08450 0.14 -1.0
1,809,345 + AMB_RS08450 0.14 -1.2
1,809,345 + AMB_RS08450 0.14 +0.9
1,809,345 + AMB_RS08450 0.14 -0.5
1,809,345 + AMB_RS08450 0.14 +0.4
1,809,345 + AMB_RS08450 0.14 -0.7
1,809,346 - AMB_RS08450 0.14 -0.5
1,809,346 - AMB_RS08450 0.14 -2.1
1,809,346 - AMB_RS08450 0.14 -1.0
1,809,346 - AMB_RS08450 0.14 -1.0
1,809,346 - AMB_RS08450 0.14 -3.1
1,809,346 - AMB_RS08450 0.14 -0.5
1,809,346 - AMB_RS08450 0.14 -0.5
1,809,346 - AMB_RS08450 0.14 -1.2
1,809,346 - AMB_RS08450 0.14 +1.4
1,809,346 - AMB_RS08450 0.14 -1.8
1,809,346 - AMB_RS08450 0.14 -1.6
1,809,346 - AMB_RS08450 0.14 -1.3
1,809,346 - AMB_RS08450 0.14 -1.2
1,809,346 - AMB_RS08450 0.14 -0.6
1,809,346 - AMB_RS08450 0.14 -1.5
1,809,346 - AMB_RS08450 0.14 -1.7
1,809,346 - AMB_RS08450 0.14 -1.6
1,809,405 + AMB_RS08450 0.19 -0.2
1,809,405 + AMB_RS08450 0.19 -1.0
1,809,405 + AMB_RS08450 0.19 -0.4
1,809,405 + AMB_RS08450 0.19 -1.6
1,809,405 + AMB_RS08450 0.19 -0.9
1,809,406 - AMB_RS08450 0.20 -1.7
1,809,406 - AMB_RS08450 0.20 -2.0
1,809,780 + AMB_RS08450 0.52 -2.1
1,809,780 + AMB_RS08450 0.52 -0.9
1,809,780 + AMB_RS08450 0.52 -1.5
1,809,781 - AMB_RS08450 0.52 -1.7
1,809,781 - AMB_RS08450 0.52 -2.0
1,809,781 - AMB_RS08450 0.52 -1.1
1,809,781 - AMB_RS08450 0.52 -1.5
1,809,781 - AMB_RS08450 0.52 -0.5
1,809,781 - AMB_RS08450 0.52 -0.7
1,809,781 - AMB_RS08450 0.52 -1.7

Or see this region's nucleotide sequence