Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07325

Experiment: 150_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07315 and AMB_RS07320 overlap by 29 nucleotidesAMB_RS07320 and AMB_RS07325 are separated by 102 nucleotidesAMB_RS07325 and AMB_RS07330 are separated by 1 nucleotidesAMB_RS07330 and AMB_RS07335 overlap by 38 nucleotides AMB_RS07315: AMB_RS07315 - hypothetical protein, at 1,580,115 to 1,580,648 _RS07315 AMB_RS07320: AMB_RS07320 - serine/threonine protein phosphatase, at 1,580,620 to 1,581,441 _RS07320 AMB_RS07325: AMB_RS07325 - succinoglycan biosynthesis transport protein exoP, at 1,581,544 to 1,583,754 _RS07325 AMB_RS07330: AMB_RS07330 - hypothetical protein, at 1,583,756 to 1,584,433 _RS07330 AMB_RS07335: AMB_RS07335 - hypothetical protein, at 1,584,396 to 1,585,619 _RS07335 Position (kb) 1581 1582 1583 1584Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1580.661 kb on + strandat 1580.661 kb on + strandat 1580.723 kb on + strand, within AMB_RS07320at 1580.912 kb on + strand, within AMB_RS07320at 1580.912 kb on + strand, within AMB_RS07320at 1580.912 kb on + strand, within AMB_RS07320at 1580.912 kb on + strand, within AMB_RS07320at 1580.913 kb on - strand, within AMB_RS07320at 1580.913 kb on - strand, within AMB_RS07320at 1580.913 kb on - strand, within AMB_RS07320at 1580.913 kb on - strand, within AMB_RS07320at 1581.048 kb on - strand, within AMB_RS07320at 1581.048 kb on - strand, within AMB_RS07320at 1581.074 kb on + strand, within AMB_RS07320at 1581.075 kb on - strand, within AMB_RS07320at 1581.230 kb on + strand, within AMB_RS07320at 1581.230 kb on + strand, within AMB_RS07320at 1581.231 kb on - strand, within AMB_RS07320at 1581.231 kb on - strand, within AMB_RS07320at 1581.354 kb on - strand, within AMB_RS07320at 1581.354 kb on - strand, within AMB_RS07320at 1581.354 kb on - strand, within AMB_RS07320at 1581.354 kb on - strand, within AMB_RS07320at 1581.442 kb on - strandat 1581.470 kb on + strandat 1581.471 kb on - strandat 1581.499 kb on + strandat 1581.500 kb on - strandat 1581.503 kb on - strandat 1581.518 kb on + strandat 1581.609 kb on + strandat 1581.629 kb on + strandat 1581.724 kb on + strandat 1581.724 kb on + strandat 1581.889 kb on + strand, within AMB_RS07325at 1581.890 kb on - strand, within AMB_RS07325at 1581.890 kb on - strand, within AMB_RS07325at 1582.159 kb on + strand, within AMB_RS07325at 1582.159 kb on + strand, within AMB_RS07325at 1582.159 kb on + strand, within AMB_RS07325at 1582.159 kb on + strand, within AMB_RS07325at 1582.159 kb on + strand, within AMB_RS07325at 1582.159 kb on + strand, within AMB_RS07325at 1582.159 kb on + strand, within AMB_RS07325at 1582.160 kb on - strand, within AMB_RS07325at 1582.160 kb on - strand, within AMB_RS07325at 1582.160 kb on - strand, within AMB_RS07325at 1582.160 kb on - strand, within AMB_RS07325at 1582.524 kb on + strand, within AMB_RS07325at 1582.524 kb on + strand, within AMB_RS07325at 1582.525 kb on - strand, within AMB_RS07325at 1582.525 kb on - strand, within AMB_RS07325at 1582.638 kb on + strand, within AMB_RS07325at 1582.639 kb on - strand, within AMB_RS07325at 1582.639 kb on - strand, within AMB_RS07325at 1582.645 kb on + strand, within AMB_RS07325at 1582.645 kb on + strand, within AMB_RS07325at 1582.780 kb on + strand, within AMB_RS07325at 1582.873 kb on + strand, within AMB_RS07325at 1582.874 kb on - strand, within AMB_RS07325at 1582.902 kb on - strand, within AMB_RS07325at 1582.977 kb on + strand, within AMB_RS07325at 1582.977 kb on + strand, within AMB_RS07325at 1582.977 kb on + strand, within AMB_RS07325at 1582.977 kb on + strand, within AMB_RS07325at 1582.977 kb on + strand, within AMB_RS07325at 1582.977 kb on + strand, within AMB_RS07325at 1582.977 kb on + strand, within AMB_RS07325at 1582.978 kb on - strand, within AMB_RS07325at 1582.978 kb on - strand, within AMB_RS07325at 1583.069 kb on - strand, within AMB_RS07325at 1583.117 kb on + strand, within AMB_RS07325at 1583.117 kb on + strand, within AMB_RS07325at 1583.485 kb on + strand, within AMB_RS07325at 1583.485 kb on + strand, within AMB_RS07325at 1583.486 kb on - strand, within AMB_RS07325at 1583.486 kb on - strand, within AMB_RS07325at 1583.486 kb on - strand, within AMB_RS07325at 1583.544 kb on - strandat 1583.544 kb on - strandat 1583.719 kb on + strandat 1583.719 kb on + strandat 1583.719 kb on + strandat 1583.719 kb on + strandat 1583.720 kb on - strandat 1583.720 kb on - strandat 1583.720 kb on - strandat 1583.720 kb on - strandat 1583.732 kb on - strandat 1583.732 kb on - strandat 1583.740 kb on + strandat 1583.740 kb on + strandat 1583.740 kb on + strandat 1584.002 kb on - strand, within AMB_RS07330at 1584.002 kb on - strand, within AMB_RS07330at 1584.002 kb on - strand, within AMB_RS07330at 1584.075 kb on + strand, within AMB_RS07330at 1584.212 kb on + strand, within AMB_RS07330at 1584.212 kb on + strand, within AMB_RS07330at 1584.212 kb on + strand, within AMB_RS07330at 1584.212 kb on + strand, within AMB_RS07330at 1584.212 kb on + strand, within AMB_RS07330at 1584.212 kb on + strand, within AMB_RS07330at 1584.212 kb on + strand, within AMB_RS07330at 1584.213 kb on - strand, within AMB_RS07330at 1584.213 kb on - strand, within AMB_RS07330at 1584.229 kb on + strand, within AMB_RS07330at 1584.332 kb on + strand, within AMB_RS07330at 1584.380 kb on + strandat 1584.380 kb on + strandat 1584.380 kb on + strandat 1584.380 kb on + strandat 1584.381 kb on - strandat 1584.413 kb on + strandat 1584.413 kb on + strandat 1584.500 kb on - strandat 1584.500 kb on - strandat 1584.500 kb on - strandat 1584.500 kb on - strandat 1584.607 kb on + strand, within AMB_RS07335at 1584.607 kb on + strand, within AMB_RS07335at 1584.607 kb on + strand, within AMB_RS07335at 1584.608 kb on - strand, within AMB_RS07335at 1584.643 kb on + strand, within AMB_RS07335

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_1
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1,580,661 + -0.3
1,580,661 + -0.7
1,580,723 + AMB_RS07320 0.13 +0.6
1,580,912 + AMB_RS07320 0.36 +1.1
1,580,912 + AMB_RS07320 0.36 +0.0
1,580,912 + AMB_RS07320 0.36 +0.5
1,580,912 + AMB_RS07320 0.36 -0.1
1,580,913 - AMB_RS07320 0.36 -0.9
1,580,913 - AMB_RS07320 0.36 -0.6
1,580,913 - AMB_RS07320 0.36 -0.0
1,580,913 - AMB_RS07320 0.36 +0.5
1,581,048 - AMB_RS07320 0.52 -1.2
1,581,048 - AMB_RS07320 0.52 +0.1
1,581,074 + AMB_RS07320 0.55 -0.2
1,581,075 - AMB_RS07320 0.55 +0.3
1,581,230 + AMB_RS07320 0.74 +2.9
1,581,230 + AMB_RS07320 0.74 -0.3
1,581,231 - AMB_RS07320 0.74 +0.1
1,581,231 - AMB_RS07320 0.74 -0.4
1,581,354 - AMB_RS07320 0.89 -0.0
1,581,354 - AMB_RS07320 0.89 +0.0
1,581,354 - AMB_RS07320 0.89 -0.3
1,581,354 - AMB_RS07320 0.89 +0.3
1,581,442 - +0.7
1,581,470 + +0.0
1,581,471 - -0.2
1,581,499 + -1.4
1,581,500 - -0.5
1,581,503 - +0.5
1,581,518 + -0.8
1,581,609 + -0.1
1,581,629 + +1.3
1,581,724 + -0.0
1,581,724 + -0.1
1,581,889 + AMB_RS07325 0.16 -1.7
1,581,890 - AMB_RS07325 0.16 -0.3
1,581,890 - AMB_RS07325 0.16 +0.3
1,582,159 + AMB_RS07325 0.28 -0.7
1,582,159 + AMB_RS07325 0.28 -1.0
1,582,159 + AMB_RS07325 0.28 +0.8
1,582,159 + AMB_RS07325 0.28 +1.2
1,582,159 + AMB_RS07325 0.28 -0.2
1,582,159 + AMB_RS07325 0.28 -0.7
1,582,159 + AMB_RS07325 0.28 +0.9
1,582,160 - AMB_RS07325 0.28 +0.9
1,582,160 - AMB_RS07325 0.28 -0.4
1,582,160 - AMB_RS07325 0.28 -0.9
1,582,160 - AMB_RS07325 0.28 +0.2
1,582,524 + AMB_RS07325 0.44 -1.0
1,582,524 + AMB_RS07325 0.44 -0.2
1,582,525 - AMB_RS07325 0.44 +0.6
1,582,525 - AMB_RS07325 0.44 -1.1
1,582,638 + AMB_RS07325 0.49 -0.8
1,582,639 - AMB_RS07325 0.50 +1.3
1,582,639 - AMB_RS07325 0.50 -0.1
1,582,645 + AMB_RS07325 0.50 -0.2
1,582,645 + AMB_RS07325 0.50 +0.5
1,582,780 + AMB_RS07325 0.56 -0.6
1,582,873 + AMB_RS07325 0.60 -0.5
1,582,874 - AMB_RS07325 0.60 +0.3
1,582,902 - AMB_RS07325 0.61 -0.7
1,582,977 + AMB_RS07325 0.65 +0.2
1,582,977 + AMB_RS07325 0.65 -0.6
1,582,977 + AMB_RS07325 0.65 -0.2
1,582,977 + AMB_RS07325 0.65 +0.0
1,582,977 + AMB_RS07325 0.65 +0.1
1,582,977 + AMB_RS07325 0.65 -1.5
1,582,977 + AMB_RS07325 0.65 +0.3
1,582,978 - AMB_RS07325 0.65 -0.0
1,582,978 - AMB_RS07325 0.65 -0.3
1,583,069 - AMB_RS07325 0.69 +0.0
1,583,117 + AMB_RS07325 0.71 -1.7
1,583,117 + AMB_RS07325 0.71 -0.2
1,583,485 + AMB_RS07325 0.88 -0.3
1,583,485 + AMB_RS07325 0.88 -0.4
1,583,486 - AMB_RS07325 0.88 +0.0
1,583,486 - AMB_RS07325 0.88 +0.3
1,583,486 - AMB_RS07325 0.88 -1.4
1,583,544 - -0.2
1,583,544 - +0.5
1,583,719 + -0.4
1,583,719 + -0.3
1,583,719 + -1.6
1,583,719 + -0.2
1,583,720 - -0.5
1,583,720 - -0.4
1,583,720 - +0.7
1,583,720 - -1.2
1,583,732 - -0.5
1,583,732 - -0.2
1,583,740 + -0.8
1,583,740 + -0.4
1,583,740 + -0.2
1,584,002 - AMB_RS07330 0.36 +0.1
1,584,002 - AMB_RS07330 0.36 -0.0
1,584,002 - AMB_RS07330 0.36 +0.9
1,584,075 + AMB_RS07330 0.47 -0.6
1,584,212 + AMB_RS07330 0.67 -0.7
1,584,212 + AMB_RS07330 0.67 +1.1
1,584,212 + AMB_RS07330 0.67 -2.7
1,584,212 + AMB_RS07330 0.67 -0.1
1,584,212 + AMB_RS07330 0.67 -0.2
1,584,212 + AMB_RS07330 0.67 +0.6
1,584,212 + AMB_RS07330 0.67 -0.4
1,584,213 - AMB_RS07330 0.67 -0.3
1,584,213 - AMB_RS07330 0.67 -0.6
1,584,229 + AMB_RS07330 0.70 +3.2
1,584,332 + AMB_RS07330 0.85 -0.5
1,584,380 + -2.7
1,584,380 + -0.7
1,584,380 + +0.1
1,584,380 + -1.0
1,584,381 - -1.7
1,584,413 + -1.8
1,584,413 + +0.0
1,584,500 - +0.4
1,584,500 - -0.1
1,584,500 - -0.2
1,584,500 - +0.1
1,584,607 + AMB_RS07335 0.17 -0.5
1,584,607 + AMB_RS07335 0.17 +0.3
1,584,607 + AMB_RS07335 0.17 -1.4
1,584,608 - AMB_RS07335 0.17 -1.5
1,584,643 + AMB_RS07335 0.20 +0.2

Or see this region's nucleotide sequence