Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06755

Experiment: 150_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS24240 and AMB_RS06755 are separated by 517 nucleotidesAMB_RS06755 and AMB_RS06760 are separated by 129 nucleotides AMB_RS24240: AMB_RS24240 - hypothetical protein, at 1,447,989 to 1,448,561 _RS24240 AMB_RS06755: AMB_RS06755 - hypothetical protein, at 1,449,079 to 1,449,558 _RS06755 AMB_RS06760: AMB_RS06760 - fumarate hydratase, at 1,449,688 to 1,451,304 _RS06760 Position (kb) 1449 1450Strain fitness (log2 ratio) -2 -1 0 1at 1448.206 kb on - strand, within AMB_RS24240at 1448.206 kb on - strand, within AMB_RS24240at 1448.206 kb on - strand, within AMB_RS24240at 1448.967 kb on + strandat 1448.967 kb on + strandat 1449.163 kb on + strand, within AMB_RS06755at 1449.164 kb on - strand, within AMB_RS06755at 1449.164 kb on - strand, within AMB_RS06755

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_1
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1,448,206 - AMB_RS24240 0.38 -0.1
1,448,206 - AMB_RS24240 0.38 +0.1
1,448,206 - AMB_RS24240 0.38 -0.9
1,448,967 + -1.1
1,448,967 + -0.2
1,449,163 + AMB_RS06755 0.17 -0.7
1,449,164 - AMB_RS06755 0.18 -1.9
1,449,164 - AMB_RS06755 0.18 -0.5

Or see this region's nucleotide sequence