Experiment: 150_initial_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS06195 and AMB_RS06200 overlap by 32 nucleotides AMB_RS06200 and AMB_RS06205 overlap by 4 nucleotides AMB_RS06205 and AMB_RS06210 are separated by 172 nucleotides AMB_RS06210 and AMB_RS06215 are separated by 90 nucleotides
AMB_RS06195: AMB_RS06195 - class I SAM-dependent methyltransferase, at 1,295,379 to 1,296,035
_RS06195
AMB_RS06200: AMB_RS06200 - Crp/Fnr family transcriptional regulator, at 1,296,004 to 1,296,672
_RS06200
AMB_RS06205: AMB_RS06205 - cytochrome-c peroxidase, at 1,296,669 to 1,298,021
_RS06205
AMB_RS06210: AMB_RS06210 - DUF4242 domain-containing protein, at 1,298,194 to 1,298,499
_RS06210
AMB_RS06215: AMB_RS06215 - two-component sensor histidine kinase, at 1,298,590 to 1,300,239
_RS06215
Position (kb) 1296
1297
1298
1299 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1296.405 kb on - strand, within AMB_RS06200 at 1296.467 kb on + strand, within AMB_RS06200 at 1296.533 kb on + strand, within AMB_RS06200 at 1296.534 kb on - strand, within AMB_RS06200 at 1296.713 kb on + strand at 1296.713 kb on + strand at 1296.713 kb on + strand at 1296.714 kb on - strand at 1296.714 kb on - strand at 1296.714 kb on - strand at 1296.714 kb on - strand at 1296.925 kb on + strand, within AMB_RS06205 at 1297.207 kb on + strand, within AMB_RS06205 at 1297.208 kb on - strand, within AMB_RS06205 at 1297.208 kb on - strand, within AMB_RS06205 at 1298.007 kb on + strand at 1298.059 kb on - strand at 1298.083 kb on + strand at 1298.118 kb on + strand at 1298.119 kb on - strand at 1298.119 kb on - strand at 1298.154 kb on + strand at 1298.155 kb on - strand at 1298.431 kb on + strand, within AMB_RS06210 at 1298.432 kb on - strand, within AMB_RS06210 at 1298.578 kb on + strand at 1298.578 kb on + strand at 1298.578 kb on + strand at 1298.578 kb on + strand at 1298.578 kb on + strand at 1298.578 kb on + strand at 1298.579 kb on - strand at 1298.579 kb on - strand at 1298.601 kb on + strand at 1298.616 kb on - strand at 1298.713 kb on + strand at 1298.713 kb on + strand at 1298.713 kb on + strand at 1298.713 kb on + strand at 1298.713 kb on + strand at 1298.714 kb on - strand at 1298.714 kb on - strand at 1298.714 kb on - strand at 1298.714 kb on - strand at 1298.714 kb on - strand at 1298.714 kb on - strand at 1298.714 kb on - strand at 1298.714 kb on - strand at 1298.714 kb on - strand at 1298.720 kb on - strand at 1298.827 kb on + strand, within AMB_RS06215 at 1298.827 kb on + strand, within AMB_RS06215 at 1298.827 kb on + strand, within AMB_RS06215 at 1298.827 kb on + strand, within AMB_RS06215 at 1298.827 kb on + strand, within AMB_RS06215 at 1298.827 kb on + strand, within AMB_RS06215 at 1298.827 kb on + strand, within AMB_RS06215 at 1298.827 kb on + strand, within AMB_RS06215 at 1298.827 kb on + strand, within AMB_RS06215 at 1298.828 kb on - strand, within AMB_RS06215 at 1298.828 kb on - strand, within AMB_RS06215 at 1298.828 kb on - strand, within AMB_RS06215 at 1298.828 kb on - strand, within AMB_RS06215 at 1298.828 kb on - strand, within AMB_RS06215 at 1298.828 kb on - strand, within AMB_RS06215 at 1298.828 kb on - strand, within AMB_RS06215 at 1298.853 kb on + strand, within AMB_RS06215 at 1298.853 kb on + strand, within AMB_RS06215 at 1298.854 kb on - strand, within AMB_RS06215 at 1298.914 kb on + strand, within AMB_RS06215 at 1298.914 kb on + strand, within AMB_RS06215 at 1298.915 kb on - strand, within AMB_RS06215 at 1298.926 kb on + strand, within AMB_RS06215 at 1298.926 kb on + strand, within AMB_RS06215 at 1298.926 kb on + strand, within AMB_RS06215 at 1298.927 kb on - strand, within AMB_RS06215 at 1298.927 kb on - strand, within AMB_RS06215
Per-strain Table
Position Strand Gene LocusTag Fraction 150_initial_1 remove 1,296,405 - AMB_RS06200 0.60 -0.7 1,296,467 + AMB_RS06200 0.69 -0.1 1,296,533 + AMB_RS06200 0.79 -3.1 1,296,534 - AMB_RS06200 0.79 +0.7 1,296,713 + -1.0 1,296,713 + +0.6 1,296,713 + -0.3 1,296,714 - +0.9 1,296,714 - -0.2 1,296,714 - +0.2 1,296,714 - -0.1 1,296,925 + AMB_RS06205 0.19 +0.1 1,297,207 + AMB_RS06205 0.40 -0.5 1,297,208 - AMB_RS06205 0.40 +0.5 1,297,208 - AMB_RS06205 0.40 +0.0 1,298,007 + +0.0 1,298,059 - +0.4 1,298,083 + -0.3 1,298,118 + +0.0 1,298,119 - -0.3 1,298,119 - +0.8 1,298,154 + -0.2 1,298,155 - -0.2 1,298,431 + AMB_RS06210 0.77 -0.4 1,298,432 - AMB_RS06210 0.78 -0.5 1,298,578 + +0.5 1,298,578 + -0.1 1,298,578 + -1.1 1,298,578 + +0.1 1,298,578 + -0.4 1,298,578 + -0.0 1,298,579 - +0.4 1,298,579 - -0.4 1,298,601 + +0.3 1,298,616 - +0.1 1,298,713 + -0.0 1,298,713 + -0.3 1,298,713 + -0.0 1,298,713 + +0.4 1,298,713 + -0.1 1,298,714 - -0.6 1,298,714 - +0.3 1,298,714 - -0.3 1,298,714 - +0.7 1,298,714 - -3.2 1,298,714 - +0.5 1,298,714 - +0.1 1,298,714 - -0.1 1,298,714 - +1.1 1,298,720 - -0.0 1,298,827 + AMB_RS06215 0.14 -0.4 1,298,827 + AMB_RS06215 0.14 +0.1 1,298,827 + AMB_RS06215 0.14 -0.2 1,298,827 + AMB_RS06215 0.14 -0.8 1,298,827 + AMB_RS06215 0.14 -0.0 1,298,827 + AMB_RS06215 0.14 +1.1 1,298,827 + AMB_RS06215 0.14 -0.5 1,298,827 + AMB_RS06215 0.14 -0.6 1,298,827 + AMB_RS06215 0.14 -0.3 1,298,828 - AMB_RS06215 0.14 -0.1 1,298,828 - AMB_RS06215 0.14 -1.2 1,298,828 - AMB_RS06215 0.14 -0.5 1,298,828 - AMB_RS06215 0.14 +1.2 1,298,828 - AMB_RS06215 0.14 -0.3 1,298,828 - AMB_RS06215 0.14 -0.1 1,298,828 - AMB_RS06215 0.14 -0.5 1,298,853 + AMB_RS06215 0.16 -0.9 1,298,853 + AMB_RS06215 0.16 +0.6 1,298,854 - AMB_RS06215 0.16 +0.5 1,298,914 + AMB_RS06215 0.20 -0.4 1,298,914 + AMB_RS06215 0.20 -0.5 1,298,915 - AMB_RS06215 0.20 -0.3 1,298,926 + AMB_RS06215 0.20 +0.2 1,298,926 + AMB_RS06215 0.20 -2.0 1,298,926 + AMB_RS06215 0.20 +0.3 1,298,927 - AMB_RS06215 0.20 +0.6 1,298,927 - AMB_RS06215 0.20 +0.3
Or see this region's nucleotide sequence