Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04305

Experiment: 150_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04300 and AMB_RS04305 are separated by 181 nucleotidesAMB_RS04305 and AMB_RS04310 are separated by 12 nucleotides AMB_RS04300: AMB_RS04300 - beta-ketoacyl-ACP reductase, at 903,086 to 903,808 _RS04300 AMB_RS04305: AMB_RS04305 - HD domain-containing protein, at 903,990 to 905,198 _RS04305 AMB_RS04310: AMB_RS04310 - receptor protein, at 905,211 to 907,154 _RS04310 Position (kb) 903 904 905 906Strain fitness (log2 ratio) -2 -1 0 1 2 3at 903.803 kb on + strandat 903.804 kb on - strandat 903.804 kb on - strandat 903.804 kb on - strandat 903.804 kb on - strandat 903.804 kb on - strandat 903.938 kb on + strandat 903.938 kb on + strandat 903.938 kb on + strandat 903.938 kb on + strandat 903.939 kb on - strandat 903.939 kb on - strandat 903.999 kb on - strandat 903.999 kb on - strandat 904.001 kb on + strandat 904.002 kb on - strandat 904.002 kb on - strandat 904.002 kb on - strandat 904.002 kb on - strandat 904.040 kb on + strandat 904.040 kb on + strandat 904.040 kb on + strandat 904.040 kb on + strandat 904.041 kb on - strandat 904.041 kb on - strandat 904.041 kb on - strandat 904.103 kb on + strandat 904.104 kb on - strandat 904.194 kb on + strand, within AMB_RS04305at 904.343 kb on + strand, within AMB_RS04305at 904.343 kb on + strand, within AMB_RS04305at 904.344 kb on - strand, within AMB_RS04305at 904.392 kb on + strand, within AMB_RS04305at 904.392 kb on + strand, within AMB_RS04305at 904.392 kb on + strand, within AMB_RS04305at 904.392 kb on + strand, within AMB_RS04305at 904.393 kb on - strand, within AMB_RS04305at 904.393 kb on - strand, within AMB_RS04305at 904.393 kb on - strand, within AMB_RS04305at 904.393 kb on - strand, within AMB_RS04305at 904.584 kb on + strand, within AMB_RS04305at 904.584 kb on + strand, within AMB_RS04305at 904.680 kb on + strand, within AMB_RS04305at 904.680 kb on + strand, within AMB_RS04305at 904.680 kb on + strand, within AMB_RS04305at 904.680 kb on + strand, within AMB_RS04305at 904.681 kb on - strand, within AMB_RS04305at 904.681 kb on - strand, within AMB_RS04305at 904.681 kb on - strand, within AMB_RS04305at 904.681 kb on - strand, within AMB_RS04305at 904.681 kb on - strand, within AMB_RS04305at 904.681 kb on - strand, within AMB_RS04305at 904.686 kb on + strand, within AMB_RS04305at 904.686 kb on + strand, within AMB_RS04305at 904.686 kb on + strand, within AMB_RS04305at 904.686 kb on + strand, within AMB_RS04305at 904.686 kb on + strand, within AMB_RS04305at 904.686 kb on + strand, within AMB_RS04305at 904.686 kb on + strand, within AMB_RS04305at 904.686 kb on + strand, within AMB_RS04305at 904.687 kb on - strand, within AMB_RS04305at 904.687 kb on - strand, within AMB_RS04305at 904.872 kb on - strand, within AMB_RS04305at 904.872 kb on - strand, within AMB_RS04305at 904.896 kb on + strand, within AMB_RS04305at 904.896 kb on + strand, within AMB_RS04305at 904.978 kb on - strand, within AMB_RS04305at 905.040 kb on - strand, within AMB_RS04305at 905.070 kb on + strand, within AMB_RS04305at 905.071 kb on - strand, within AMB_RS04305at 905.308 kb on + strandat 905.308 kb on + strandat 905.308 kb on + strandat 905.309 kb on - strandat 905.443 kb on + strand, within AMB_RS04310at 905.443 kb on + strand, within AMB_RS04310at 905.443 kb on + strand, within AMB_RS04310at 905.443 kb on + strand, within AMB_RS04310at 905.444 kb on - strand, within AMB_RS04310at 905.444 kb on - strand, within AMB_RS04310at 905.677 kb on + strand, within AMB_RS04310at 905.678 kb on - strand, within AMB_RS04310at 905.696 kb on - strand, within AMB_RS04310at 905.696 kb on - strand, within AMB_RS04310at 905.779 kb on + strand, within AMB_RS04310at 905.780 kb on - strand, within AMB_RS04310at 905.944 kb on + strand, within AMB_RS04310at 905.944 kb on + strand, within AMB_RS04310at 905.944 kb on + strand, within AMB_RS04310at 906.091 kb on + strand, within AMB_RS04310at 906.092 kb on - strand, within AMB_RS04310at 906.092 kb on - strand, within AMB_RS04310

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_1
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903,803 + -0.9
903,804 - -0.9
903,804 - -0.3
903,804 - -0.7
903,804 - -1.4
903,804 - -0.3
903,938 + +0.4
903,938 + -1.4
903,938 + +0.7
903,938 + -1.6
903,939 - -1.0
903,939 - -0.3
903,999 - -0.0
903,999 - +0.1
904,001 + -0.1
904,002 - -0.2
904,002 - -1.6
904,002 - +1.1
904,002 - -0.1
904,040 + +0.2
904,040 + +3.5
904,040 + -2.1
904,040 + -0.2
904,041 - -0.3
904,041 - +0.6
904,041 - -0.5
904,103 + -0.9
904,104 - -0.7
904,194 + AMB_RS04305 0.17 -0.9
904,343 + AMB_RS04305 0.29 -0.1
904,343 + AMB_RS04305 0.29 +0.1
904,344 - AMB_RS04305 0.29 +0.2
904,392 + AMB_RS04305 0.33 -0.1
904,392 + AMB_RS04305 0.33 +0.7
904,392 + AMB_RS04305 0.33 +0.7
904,392 + AMB_RS04305 0.33 -0.9
904,393 - AMB_RS04305 0.33 -0.3
904,393 - AMB_RS04305 0.33 +0.4
904,393 - AMB_RS04305 0.33 -0.5
904,393 - AMB_RS04305 0.33 -1.7
904,584 + AMB_RS04305 0.49 -1.4
904,584 + AMB_RS04305 0.49 -0.3
904,680 + AMB_RS04305 0.57 -0.6
904,680 + AMB_RS04305 0.57 -0.8
904,680 + AMB_RS04305 0.57 -0.2
904,680 + AMB_RS04305 0.57 -0.3
904,681 - AMB_RS04305 0.57 -0.3
904,681 - AMB_RS04305 0.57 -0.4
904,681 - AMB_RS04305 0.57 +0.3
904,681 - AMB_RS04305 0.57 -1.0
904,681 - AMB_RS04305 0.57 -0.1
904,681 - AMB_RS04305 0.57 -0.4
904,686 + AMB_RS04305 0.58 +1.0
904,686 + AMB_RS04305 0.58 -0.5
904,686 + AMB_RS04305 0.58 +0.2
904,686 + AMB_RS04305 0.58 -0.7
904,686 + AMB_RS04305 0.58 -1.0
904,686 + AMB_RS04305 0.58 +0.0
904,686 + AMB_RS04305 0.58 +0.2
904,686 + AMB_RS04305 0.58 -0.5
904,687 - AMB_RS04305 0.58 -1.8
904,687 - AMB_RS04305 0.58 +0.2
904,872 - AMB_RS04305 0.73 +0.5
904,872 - AMB_RS04305 0.73 +0.4
904,896 + AMB_RS04305 0.75 +0.2
904,896 + AMB_RS04305 0.75 +0.2
904,978 - AMB_RS04305 0.82 +0.5
905,040 - AMB_RS04305 0.87 -0.3
905,070 + AMB_RS04305 0.89 -0.3
905,071 - AMB_RS04305 0.89 +0.1
905,308 + +0.1
905,308 + -0.3
905,308 + -0.8
905,309 - +0.5
905,443 + AMB_RS04310 0.12 +0.3
905,443 + AMB_RS04310 0.12 +0.0
905,443 + AMB_RS04310 0.12 -0.2
905,443 + AMB_RS04310 0.12 +0.1
905,444 - AMB_RS04310 0.12 -1.2
905,444 - AMB_RS04310 0.12 -0.1
905,677 + AMB_RS04310 0.24 +0.4
905,678 - AMB_RS04310 0.24 +0.0
905,696 - AMB_RS04310 0.25 -0.6
905,696 - AMB_RS04310 0.25 +1.0
905,779 + AMB_RS04310 0.29 +0.1
905,780 - AMB_RS04310 0.29 -1.7
905,944 + AMB_RS04310 0.38 +0.1
905,944 + AMB_RS04310 0.38 +1.0
905,944 + AMB_RS04310 0.38 +0.0
906,091 + AMB_RS04310 0.45 -0.0
906,092 - AMB_RS04310 0.45 -2.0
906,092 - AMB_RS04310 0.45 -1.6

Or see this region's nucleotide sequence