Experiment: 150_initial_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03515 and AMB_RS03520 overlap by 8 nucleotides AMB_RS03520 and AMB_RS03525 overlap by 43 nucleotides AMB_RS03525 and AMB_RS03530 are separated by 1 nucleotides
AMB_RS03515: AMB_RS03515 - DUF115 domain-containing protein, at 738,003 to 740,003
_RS03515
AMB_RS03520: AMB_RS03520 - hypothetical protein, at 739,996 to 740,262
_RS03520
AMB_RS03525: AMB_RS03525 - O-linked N-acetylglucosamine transferase, at 740,220 to 741,911
_RS03525
AMB_RS03530: AMB_RS03530 - hypothetical protein, at 741,913 to 742,935
_RS03530
Position (kb) 740
741
742 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 739.230 kb on + strand, within AMB_RS03515 at 739.230 kb on + strand, within AMB_RS03515 at 739.230 kb on + strand, within AMB_RS03515 at 739.230 kb on + strand, within AMB_RS03515 at 739.230 kb on + strand, within AMB_RS03515 at 739.230 kb on + strand, within AMB_RS03515 at 739.230 kb on + strand, within AMB_RS03515 at 739.230 kb on + strand, within AMB_RS03515 at 739.231 kb on - strand, within AMB_RS03515 at 739.231 kb on - strand, within AMB_RS03515 at 739.231 kb on - strand, within AMB_RS03515 at 739.231 kb on - strand, within AMB_RS03515 at 739.293 kb on + strand, within AMB_RS03515 at 739.392 kb on + strand, within AMB_RS03515 at 739.392 kb on + strand, within AMB_RS03515 at 739.392 kb on + strand, within AMB_RS03515 at 739.393 kb on - strand, within AMB_RS03515 at 739.393 kb on - strand, within AMB_RS03515 at 739.393 kb on - strand, within AMB_RS03515 at 739.393 kb on - strand, within AMB_RS03515 at 739.393 kb on - strand, within AMB_RS03515 at 739.393 kb on - strand, within AMB_RS03515 at 739.395 kb on - strand, within AMB_RS03515 at 739.550 kb on + strand, within AMB_RS03515 at 739.550 kb on + strand, within AMB_RS03515 at 739.749 kb on + strand, within AMB_RS03515 at 739.749 kb on + strand, within AMB_RS03515 at 739.749 kb on + strand, within AMB_RS03515 at 739.750 kb on - strand, within AMB_RS03515 at 739.815 kb on + strand at 739.815 kb on + strand at 739.815 kb on + strand at 739.815 kb on + strand at 739.815 kb on + strand at 739.815 kb on + strand at 739.815 kb on + strand at 739.821 kb on + strand at 739.821 kb on + strand at 739.821 kb on + strand at 739.821 kb on + strand at 739.821 kb on + strand at 739.821 kb on + strand at 739.821 kb on + strand at 739.821 kb on + strand at 739.821 kb on + strand at 739.821 kb on + strand at 739.822 kb on - strand at 739.822 kb on - strand at 739.822 kb on - strand at 739.822 kb on - strand at 739.822 kb on - strand at 739.822 kb on - strand at 739.824 kb on + strand at 739.824 kb on + strand at 739.824 kb on + strand at 739.824 kb on + strand at 739.824 kb on + strand at 739.824 kb on + strand at 739.824 kb on + strand at 739.824 kb on + strand at 739.824 kb on + strand at 739.824 kb on + strand at 739.824 kb on + strand at 739.825 kb on - strand at 739.825 kb on - strand at 739.825 kb on - strand at 739.825 kb on - strand at 739.825 kb on - strand at 739.825 kb on - strand at 739.825 kb on - strand at 739.825 kb on - strand at 739.828 kb on + strand at 739.828 kb on + strand at 739.828 kb on + strand at 739.828 kb on + strand at 739.828 kb on + strand at 739.828 kb on + strand at 739.828 kb on + strand at 739.828 kb on + strand at 739.828 kb on + strand at 739.828 kb on + strand at 739.828 kb on + strand at 739.828 kb on + strand at 739.828 kb on + strand at 739.829 kb on - strand at 739.829 kb on - strand at 739.829 kb on - strand at 739.829 kb on - strand at 739.829 kb on - strand at 739.829 kb on - strand at 739.829 kb on - strand at 739.929 kb on + strand at 739.929 kb on + strand at 739.929 kb on + strand at 739.930 kb on - strand at 739.930 kb on - strand at 739.977 kb on - strand at 739.977 kb on - strand at 739.995 kb on + strand at 739.995 kb on + strand at 739.996 kb on - strand at 739.996 kb on - strand at 740.116 kb on + strand, within AMB_RS03520 at 740.116 kb on + strand, within AMB_RS03520 at 740.116 kb on + strand, within AMB_RS03520 at 740.116 kb on + strand, within AMB_RS03520 at 740.116 kb on + strand, within AMB_RS03520 at 740.117 kb on - strand, within AMB_RS03520 at 740.117 kb on - strand, within AMB_RS03520 at 740.117 kb on - strand, within AMB_RS03520 at 740.117 kb on - strand, within AMB_RS03520 at 740.117 kb on - strand, within AMB_RS03520 at 740.117 kb on - strand, within AMB_RS03520 at 740.241 kb on + strand at 740.241 kb on + strand at 740.241 kb on + strand at 740.241 kb on + strand at 740.242 kb on - strand at 740.242 kb on - strand at 740.242 kb on - strand at 740.242 kb on - strand at 740.244 kb on - strand at 740.274 kb on + strand at 740.274 kb on + strand at 740.274 kb on + strand at 740.274 kb on + strand at 740.274 kb on + strand at 740.274 kb on + strand at 740.274 kb on + strand at 740.275 kb on - strand at 740.275 kb on - strand at 740.275 kb on - strand at 740.275 kb on - strand at 740.278 kb on - strand at 740.349 kb on + strand at 740.349 kb on + strand at 740.349 kb on + strand at 740.350 kb on - strand at 740.350 kb on - strand at 740.454 kb on + strand, within AMB_RS03525 at 740.454 kb on + strand, within AMB_RS03525 at 740.455 kb on - strand, within AMB_RS03525 at 740.856 kb on + strand, within AMB_RS03525 at 740.856 kb on + strand, within AMB_RS03525 at 740.856 kb on + strand, within AMB_RS03525 at 740.857 kb on - strand, within AMB_RS03525 at 740.857 kb on - strand, within AMB_RS03525 at 740.857 kb on - strand, within AMB_RS03525 at 740.857 kb on - strand, within AMB_RS03525 at 740.857 kb on - strand, within AMB_RS03525 at 740.857 kb on - strand, within AMB_RS03525 at 740.857 kb on - strand, within AMB_RS03525 at 740.919 kb on + strand, within AMB_RS03525 at 740.919 kb on + strand, within AMB_RS03525 at 740.920 kb on - strand, within AMB_RS03525 at 740.920 kb on - strand, within AMB_RS03525 at 740.920 kb on - strand, within AMB_RS03525 at 740.920 kb on - strand, within AMB_RS03525 at 740.920 kb on - strand, within AMB_RS03525 at 740.920 kb on - strand, within AMB_RS03525 at 741.214 kb on - strand, within AMB_RS03525 at 741.214 kb on - strand, within AMB_RS03525 at 741.214 kb on - strand, within AMB_RS03525 at 741.214 kb on - strand, within AMB_RS03525 at 741.486 kb on + strand, within AMB_RS03525 at 741.486 kb on + strand, within AMB_RS03525 at 741.486 kb on + strand, within AMB_RS03525 at 741.486 kb on + strand, within AMB_RS03525 at 741.486 kb on + strand, within AMB_RS03525 at 741.487 kb on - strand, within AMB_RS03525 at 741.487 kb on - strand, within AMB_RS03525 at 741.487 kb on - strand, within AMB_RS03525 at 741.487 kb on - strand, within AMB_RS03525 at 741.487 kb on - strand, within AMB_RS03525 at 741.487 kb on - strand, within AMB_RS03525 at 741.590 kb on + strand, within AMB_RS03525 at 741.590 kb on + strand, within AMB_RS03525 at 741.590 kb on + strand, within AMB_RS03525 at 741.590 kb on + strand, within AMB_RS03525 at 741.591 kb on - strand, within AMB_RS03525 at 741.591 kb on - strand, within AMB_RS03525 at 741.591 kb on - strand, within AMB_RS03525 at 741.744 kb on + strand at 741.744 kb on + strand at 741.744 kb on + strand at 741.744 kb on + strand at 741.745 kb on - strand at 741.982 kb on + strand at 741.982 kb on + strand at 742.363 kb on + strand, within AMB_RS03530 at 742.363 kb on + strand, within AMB_RS03530 at 742.363 kb on + strand, within AMB_RS03530 at 742.363 kb on + strand, within AMB_RS03530 at 742.363 kb on + strand, within AMB_RS03530 at 742.364 kb on - strand, within AMB_RS03530 at 742.364 kb on - strand, within AMB_RS03530 at 742.364 kb on - strand, within AMB_RS03530 at 742.364 kb on - strand, within AMB_RS03530 at 742.364 kb on - strand, within AMB_RS03530 at 742.364 kb on - strand, within AMB_RS03530 at 742.408 kb on + strand, within AMB_RS03530 at 742.408 kb on + strand, within AMB_RS03530 at 742.462 kb on + strand, within AMB_RS03530 at 742.513 kb on + strand, within AMB_RS03530 at 742.513 kb on + strand, within AMB_RS03530 at 742.514 kb on - strand, within AMB_RS03530 at 742.514 kb on - strand, within AMB_RS03530 at 742.514 kb on - strand, within AMB_RS03530 at 742.546 kb on + strand, within AMB_RS03530
Per-strain Table
Position Strand Gene LocusTag Fraction 150_initial_1 remove 739,230 + AMB_RS03515 0.61 -0.1 739,230 + AMB_RS03515 0.61 +0.7 739,230 + AMB_RS03515 0.61 -0.2 739,230 + AMB_RS03515 0.61 -0.1 739,230 + AMB_RS03515 0.61 +0.4 739,230 + AMB_RS03515 0.61 +0.5 739,230 + AMB_RS03515 0.61 +0.4 739,230 + AMB_RS03515 0.61 -1.2 739,231 - AMB_RS03515 0.61 -0.2 739,231 - AMB_RS03515 0.61 +0.6 739,231 - AMB_RS03515 0.61 +1.1 739,231 - AMB_RS03515 0.61 -0.3 739,293 + AMB_RS03515 0.64 +0.2 739,392 + AMB_RS03515 0.69 -0.2 739,392 + AMB_RS03515 0.69 +0.3 739,392 + AMB_RS03515 0.69 +0.5 739,393 - AMB_RS03515 0.69 -0.4 739,393 - AMB_RS03515 0.69 -1.6 739,393 - AMB_RS03515 0.69 +0.5 739,393 - AMB_RS03515 0.69 -1.2 739,393 - AMB_RS03515 0.69 -0.9 739,393 - AMB_RS03515 0.69 +0.4 739,395 - AMB_RS03515 0.70 -0.4 739,550 + AMB_RS03515 0.77 -0.6 739,550 + AMB_RS03515 0.77 +0.4 739,749 + AMB_RS03515 0.87 +1.4 739,749 + AMB_RS03515 0.87 -0.7 739,749 + AMB_RS03515 0.87 -1.5 739,750 - AMB_RS03515 0.87 +0.1 739,815 + -0.0 739,815 + -1.0 739,815 + -0.4 739,815 + +0.4 739,815 + -0.3 739,815 + +1.6 739,815 + -0.6 739,821 + -0.6 739,821 + -0.5 739,821 + -0.5 739,821 + -1.2 739,821 + -0.1 739,821 + +1.1 739,821 + +0.9 739,821 + -0.0 739,821 + +0.0 739,821 + +0.3 739,822 - -0.2 739,822 - -0.3 739,822 - -0.5 739,822 - +0.0 739,822 - +0.0 739,822 - -0.2 739,824 + -0.3 739,824 + -0.6 739,824 + -0.2 739,824 + +0.9 739,824 + -0.6 739,824 + -0.4 739,824 + -0.1 739,824 + -0.4 739,824 + -1.1 739,824 + -0.6 739,824 + +0.0 739,825 - +0.1 739,825 - -0.8 739,825 - -2.6 739,825 - +0.0 739,825 - +0.9 739,825 - -0.2 739,825 - -0.2 739,825 - -0.5 739,828 + -0.5 739,828 + -0.1 739,828 + -0.4 739,828 + -0.2 739,828 + -0.4 739,828 + +0.4 739,828 + +0.1 739,828 + +0.1 739,828 + +0.1 739,828 + +0.3 739,828 + +0.3 739,828 + -0.5 739,828 + -0.0 739,829 - +0.1 739,829 - -0.4 739,829 - -0.0 739,829 - -0.1 739,829 - -0.3 739,829 - -0.6 739,829 - -0.6 739,929 + -0.7 739,929 + -0.2 739,929 + -0.8 739,930 - -0.1 739,930 - -0.1 739,977 - -0.7 739,977 - -0.1 739,995 + -0.9 739,995 + +0.2 739,996 - -0.6 739,996 - -0.9 740,116 + AMB_RS03520 0.45 -0.1 740,116 + AMB_RS03520 0.45 -0.2 740,116 + AMB_RS03520 0.45 -0.4 740,116 + AMB_RS03520 0.45 -0.7 740,116 + AMB_RS03520 0.45 -1.2 740,117 - AMB_RS03520 0.45 -0.8 740,117 - AMB_RS03520 0.45 -0.5 740,117 - AMB_RS03520 0.45 -0.1 740,117 - AMB_RS03520 0.45 -0.4 740,117 - AMB_RS03520 0.45 -0.4 740,117 - AMB_RS03520 0.45 +0.2 740,241 + +0.2 740,241 + -0.6 740,241 + +0.2 740,241 + -0.1 740,242 - -0.4 740,242 - -0.4 740,242 - -0.2 740,242 - -1.8 740,244 - -0.2 740,274 + +0.1 740,274 + -0.3 740,274 + +0.1 740,274 + +0.2 740,274 + +0.2 740,274 + -0.0 740,274 + +0.4 740,275 - -0.1 740,275 - +0.7 740,275 - -0.4 740,275 - -0.0 740,278 - -0.0 740,349 + -1.5 740,349 + +0.4 740,349 + -0.0 740,350 - +0.6 740,350 - -0.3 740,454 + AMB_RS03525 0.14 -1.8 740,454 + AMB_RS03525 0.14 +0.6 740,455 - AMB_RS03525 0.14 +0.6 740,856 + AMB_RS03525 0.38 -0.2 740,856 + AMB_RS03525 0.38 -0.2 740,856 + AMB_RS03525 0.38 -1.1 740,857 - AMB_RS03525 0.38 +0.0 740,857 - AMB_RS03525 0.38 -0.2 740,857 - AMB_RS03525 0.38 -0.4 740,857 - AMB_RS03525 0.38 -0.3 740,857 - AMB_RS03525 0.38 +0.5 740,857 - AMB_RS03525 0.38 +0.7 740,857 - AMB_RS03525 0.38 -0.5 740,919 + AMB_RS03525 0.41 +0.4 740,919 + AMB_RS03525 0.41 +0.0 740,920 - AMB_RS03525 0.41 +0.0 740,920 - AMB_RS03525 0.41 +0.2 740,920 - AMB_RS03525 0.41 -0.1 740,920 - AMB_RS03525 0.41 +0.4 740,920 - AMB_RS03525 0.41 -0.5 740,920 - AMB_RS03525 0.41 +0.2 741,214 - AMB_RS03525 0.59 +0.1 741,214 - AMB_RS03525 0.59 +0.1 741,214 - AMB_RS03525 0.59 -0.9 741,214 - AMB_RS03525 0.59 -0.2 741,486 + AMB_RS03525 0.75 -1.0 741,486 + AMB_RS03525 0.75 +0.4 741,486 + AMB_RS03525 0.75 -0.2 741,486 + AMB_RS03525 0.75 +0.1 741,486 + AMB_RS03525 0.75 -0.1 741,487 - AMB_RS03525 0.75 -0.2 741,487 - AMB_RS03525 0.75 +0.4 741,487 - AMB_RS03525 0.75 +0.8 741,487 - AMB_RS03525 0.75 -1.0 741,487 - AMB_RS03525 0.75 -0.3 741,487 - AMB_RS03525 0.75 +0.5 741,590 + AMB_RS03525 0.81 -0.2 741,590 + AMB_RS03525 0.81 +0.4 741,590 + AMB_RS03525 0.81 +0.0 741,590 + AMB_RS03525 0.81 -0.5 741,591 - AMB_RS03525 0.81 -0.1 741,591 - AMB_RS03525 0.81 -1.2 741,591 - AMB_RS03525 0.81 -0.4 741,744 + -0.2 741,744 + +0.3 741,744 + -0.4 741,744 + -0.4 741,745 - -0.6 741,982 + +0.6 741,982 + -0.2 742,363 + AMB_RS03530 0.44 -1.6 742,363 + AMB_RS03530 0.44 +0.6 742,363 + AMB_RS03530 0.44 +0.4 742,363 + AMB_RS03530 0.44 +0.3 742,363 + AMB_RS03530 0.44 +0.4 742,364 - AMB_RS03530 0.44 -0.5 742,364 - AMB_RS03530 0.44 +2.9 742,364 - AMB_RS03530 0.44 -1.1 742,364 - AMB_RS03530 0.44 +0.1 742,364 - AMB_RS03530 0.44 +0.1 742,364 - AMB_RS03530 0.44 +1.4 742,408 + AMB_RS03530 0.48 -0.4 742,408 + AMB_RS03530 0.48 -0.1 742,462 + AMB_RS03530 0.54 -0.2 742,513 + AMB_RS03530 0.59 -1.1 742,513 + AMB_RS03530 0.59 +0.2 742,514 - AMB_RS03530 0.59 -1.4 742,514 - AMB_RS03530 0.59 -0.2 742,514 - AMB_RS03530 0.59 -0.1 742,546 + AMB_RS03530 0.62 -0.8
Or see this region's nucleotide sequence