Experiment: 150_initial_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03305 and AMB_RS03310 are separated by 375 nucleotides AMB_RS03310 and AMB_RS03315 are separated by 15 nucleotides AMB_RS03315 and AMB_RS03320 are separated by 437 nucleotides
AMB_RS03305: AMB_RS03305 - IS3 family transposase, at 691,510 to 692,355
_RS03305
AMB_RS03310: AMB_RS03310 - hypothetical protein, at 692,731 to 694,056
_RS03310
AMB_RS03315: AMB_RS03315 - hypothetical protein, at 694,072 to 694,356
_RS03315
AMB_RS03320: AMB_RS03320 - hypothetical protein, at 694,794 to 695,342
_RS03320
Position (kb) 692
693
694
695 Strain fitness (log2 ratio) -2
-1
0
1
2 at 692.388 kb on + strand at 692.388 kb on + strand at 692.388 kb on + strand at 692.388 kb on + strand at 692.388 kb on + strand at 692.388 kb on + strand at 692.427 kb on - strand at 692.427 kb on - strand at 692.427 kb on - strand at 692.511 kb on - strand at 692.524 kb on + strand at 692.524 kb on + strand at 692.524 kb on + strand at 692.524 kb on + strand at 692.525 kb on - strand at 692.577 kb on + strand at 692.578 kb on - strand at 692.732 kb on + strand at 692.733 kb on - strand at 692.897 kb on + strand, within AMB_RS03310 at 692.897 kb on + strand, within AMB_RS03310 at 692.897 kb on + strand, within AMB_RS03310 at 692.918 kb on - strand, within AMB_RS03310 at 692.918 kb on - strand, within AMB_RS03310 at 692.943 kb on + strand, within AMB_RS03310 at 692.944 kb on - strand, within AMB_RS03310 at 692.983 kb on + strand, within AMB_RS03310 at 692.983 kb on + strand, within AMB_RS03310 at 693.049 kb on + strand, within AMB_RS03310 at 693.049 kb on + strand, within AMB_RS03310 at 693.050 kb on - strand, within AMB_RS03310 at 693.050 kb on - strand, within AMB_RS03310 at 693.117 kb on + strand, within AMB_RS03310 at 693.117 kb on + strand, within AMB_RS03310 at 693.118 kb on - strand, within AMB_RS03310 at 693.120 kb on + strand, within AMB_RS03310 at 693.121 kb on - strand, within AMB_RS03310 at 693.131 kb on - strand, within AMB_RS03310 at 693.134 kb on - strand, within AMB_RS03310 at 693.276 kb on + strand, within AMB_RS03310 at 693.276 kb on + strand, within AMB_RS03310 at 693.276 kb on + strand, within AMB_RS03310 at 693.277 kb on - strand, within AMB_RS03310 at 693.277 kb on - strand, within AMB_RS03310 at 693.404 kb on + strand, within AMB_RS03310 at 693.551 kb on + strand, within AMB_RS03310 at 693.551 kb on + strand, within AMB_RS03310 at 693.551 kb on + strand, within AMB_RS03310 at 693.554 kb on - strand, within AMB_RS03310 at 693.692 kb on + strand, within AMB_RS03310 at 693.693 kb on - strand, within AMB_RS03310 at 693.693 kb on - strand, within AMB_RS03310 at 693.693 kb on - strand, within AMB_RS03310 at 693.701 kb on + strand, within AMB_RS03310 at 693.701 kb on + strand, within AMB_RS03310 at 693.702 kb on - strand, within AMB_RS03310 at 693.702 kb on - strand, within AMB_RS03310 at 693.702 kb on - strand, within AMB_RS03310 at 693.774 kb on - strand, within AMB_RS03310 at 693.939 kb on + strand at 693.940 kb on - strand at 693.940 kb on - strand at 693.965 kb on + strand at 694.271 kb on + strand, within AMB_RS03315 at 694.271 kb on + strand, within AMB_RS03315 at 694.271 kb on + strand, within AMB_RS03315 at 694.429 kb on + strand at 694.432 kb on - strand at 694.512 kb on + strand at 694.597 kb on + strand at 694.634 kb on + strand at 694.635 kb on - strand at 694.654 kb on + strand at 694.666 kb on - strand at 694.741 kb on + strand at 694.742 kb on - strand at 694.742 kb on - strand at 694.806 kb on + strand at 694.806 kb on + strand at 694.806 kb on + strand at 694.807 kb on - strand at 694.807 kb on - strand at 694.822 kb on - strand at 694.822 kb on - strand at 694.835 kb on + strand at 694.836 kb on - strand at 694.878 kb on + strand, within AMB_RS03320 at 694.879 kb on - strand, within AMB_RS03320 at 694.908 kb on + strand, within AMB_RS03320 at 694.908 kb on + strand, within AMB_RS03320 at 694.908 kb on + strand, within AMB_RS03320 at 694.908 kb on + strand, within AMB_RS03320 at 694.908 kb on + strand, within AMB_RS03320 at 694.909 kb on - strand, within AMB_RS03320 at 695.019 kb on - strand, within AMB_RS03320 at 695.030 kb on + strand, within AMB_RS03320
Per-strain Table
Position Strand Gene LocusTag Fraction 150_initial_1 remove 692,388 + +0.4 692,388 + +0.8 692,388 + -0.2 692,388 + -0.7 692,388 + +0.1 692,388 + -0.8 692,427 - +1.0 692,427 - -1.2 692,427 - -0.5 692,511 - -1.1 692,524 + +0.2 692,524 + -0.3 692,524 + -0.9 692,524 + -0.1 692,525 - -0.8 692,577 + -0.7 692,578 - +0.1 692,732 + -1.5 692,733 - +0.1 692,897 + AMB_RS03310 0.13 -0.1 692,897 + AMB_RS03310 0.13 +1.2 692,897 + AMB_RS03310 0.13 -0.1 692,918 - AMB_RS03310 0.14 -0.7 692,918 - AMB_RS03310 0.14 +0.4 692,943 + AMB_RS03310 0.16 +1.4 692,944 - AMB_RS03310 0.16 -0.3 692,983 + AMB_RS03310 0.19 -0.4 692,983 + AMB_RS03310 0.19 +0.3 693,049 + AMB_RS03310 0.24 +1.8 693,049 + AMB_RS03310 0.24 -0.2 693,050 - AMB_RS03310 0.24 -1.2 693,050 - AMB_RS03310 0.24 +0.4 693,117 + AMB_RS03310 0.29 -0.4 693,117 + AMB_RS03310 0.29 -0.1 693,118 - AMB_RS03310 0.29 -0.1 693,120 + AMB_RS03310 0.29 -0.0 693,121 - AMB_RS03310 0.29 +1.5 693,131 - AMB_RS03310 0.30 +0.4 693,134 - AMB_RS03310 0.30 -1.0 693,276 + AMB_RS03310 0.41 +0.4 693,276 + AMB_RS03310 0.41 -0.1 693,276 + AMB_RS03310 0.41 -0.2 693,277 - AMB_RS03310 0.41 -1.0 693,277 - AMB_RS03310 0.41 -0.0 693,404 + AMB_RS03310 0.51 -0.2 693,551 + AMB_RS03310 0.62 +0.5 693,551 + AMB_RS03310 0.62 -0.3 693,551 + AMB_RS03310 0.62 -0.2 693,554 - AMB_RS03310 0.62 -0.3 693,692 + AMB_RS03310 0.72 -1.6 693,693 - AMB_RS03310 0.73 +0.2 693,693 - AMB_RS03310 0.73 -0.3 693,693 - AMB_RS03310 0.73 -0.3 693,701 + AMB_RS03310 0.73 -0.1 693,701 + AMB_RS03310 0.73 -0.3 693,702 - AMB_RS03310 0.73 +0.2 693,702 - AMB_RS03310 0.73 -1.2 693,702 - AMB_RS03310 0.73 -0.4 693,774 - AMB_RS03310 0.79 -0.1 693,939 + -0.2 693,940 - +1.7 693,940 - +0.2 693,965 + -0.3 694,271 + AMB_RS03315 0.70 -1.6 694,271 + AMB_RS03315 0.70 +0.3 694,271 + AMB_RS03315 0.70 +1.1 694,429 + -1.3 694,432 - +0.7 694,512 + -0.2 694,597 + +1.2 694,634 + -0.6 694,635 - -0.4 694,654 + +1.1 694,666 - -0.2 694,741 + -0.4 694,742 - +0.1 694,742 - -1.2 694,806 + -0.0 694,806 + +0.2 694,806 + -0.2 694,807 - -0.9 694,807 - +1.2 694,822 - -0.5 694,822 - -0.3 694,835 + -0.1 694,836 - -0.4 694,878 + AMB_RS03320 0.15 -0.3 694,879 - AMB_RS03320 0.15 -0.1 694,908 + AMB_RS03320 0.21 -0.1 694,908 + AMB_RS03320 0.21 +0.1 694,908 + AMB_RS03320 0.21 -0.3 694,908 + AMB_RS03320 0.21 -0.2 694,908 + AMB_RS03320 0.21 -0.4 694,909 - AMB_RS03320 0.21 +0.0 695,019 - AMB_RS03320 0.41 -1.1 695,030 + AMB_RS03320 0.43 -2.4
Or see this region's nucleotide sequence