Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03285

Experiment: 150_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03280 and AMB_RS03285 overlap by 4 nucleotidesAMB_RS03285 and AMB_RS03290 overlap by 4 nucleotides AMB_RS03280: AMB_RS03280 - DNA polymerase III subunit beta, at 685,353 to 686,471 _RS03280 AMB_RS03285: AMB_RS03285 - DNA replication and repair protein RecF, at 686,468 to 687,652 _RS03285 AMB_RS03290: AMB_RS03290 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 687,649 to 690,099 _RS03290 Position (kb) 686 687 688Strain fitness (log2 ratio) -2 -1 0 1at 687.639 kb on + strandat 687.639 kb on + strandat 687.648 kb on + strandat 687.648 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_1
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687,639 + -2.6
687,639 + +0.3
687,648 + -0.6
687,648 + -0.4

Or see this region's nucleotide sequence