Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02590

Experiment: 150_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02585 and AMB_RS02590 are separated by 12 nucleotidesAMB_RS02590 and AMB_RS02595 are separated by 260 nucleotides AMB_RS02585: AMB_RS02585 - flagellar motor switch protein FliG, at 536,104 to 537,123 _RS02585 AMB_RS02590: AMB_RS02590 - flagellar M-ring protein FliF, at 537,136 to 538,797 _RS02590 AMB_RS02595: AMB_RS02595 - flagellar hook protein FlgE, at 539,058 to 541,589 _RS02595 Position (kb) 537 538 539Strain fitness (log2 ratio) -2 -1 0 1at 536.747 kb on + strand, within AMB_RS02585at 536.748 kb on - strand, within AMB_RS02585at 536.748 kb on - strand, within AMB_RS02585at 536.748 kb on - strand, within AMB_RS02585at 536.748 kb on - strand, within AMB_RS02585at 536.797 kb on - strand, within AMB_RS02585at 537.101 kb on + strandat 537.102 kb on - strandat 537.563 kb on + strand, within AMB_RS02590at 537.563 kb on + strand, within AMB_RS02590at 537.563 kb on + strand, within AMB_RS02590at 537.563 kb on + strand, within AMB_RS02590at 537.564 kb on - strand, within AMB_RS02590at 537.564 kb on - strand, within AMB_RS02590at 537.564 kb on - strand, within AMB_RS02590at 537.564 kb on - strand, within AMB_RS02590at 537.564 kb on - strand, within AMB_RS02590at 537.795 kb on - strand, within AMB_RS02590at 537.795 kb on - strand, within AMB_RS02590at 538.130 kb on + strand, within AMB_RS02590at 538.131 kb on - strand, within AMB_RS02590at 538.131 kb on - strand, within AMB_RS02590at 538.595 kb on + strand, within AMB_RS02590at 538.662 kb on - strandat 538.662 kb on - strandat 538.662 kb on - strandat 538.662 kb on - strandat 538.703 kb on + strandat 538.703 kb on + strandat 538.703 kb on + strandat 538.703 kb on + strandat 538.704 kb on - strandat 538.704 kb on - strandat 538.874 kb on + strandat 538.874 kb on + strandat 538.874 kb on + strandat 538.874 kb on + strandat 538.874 kb on + strandat 538.874 kb on + strandat 538.875 kb on - strandat 538.875 kb on - strandat 538.937 kb on + strandat 538.937 kb on + strandat 538.937 kb on + strandat 538.937 kb on + strandat 538.937 kb on + strandat 538.938 kb on - strandat 539.245 kb on + strandat 539.245 kb on + strandat 539.246 kb on - strandat 539.246 kb on - strandat 539.246 kb on - strandat 539.246 kb on - strandat 539.246 kb on - strandat 539.440 kb on + strand, within AMB_RS02595at 539.440 kb on + strand, within AMB_RS02595at 539.452 kb on + strand, within AMB_RS02595at 539.452 kb on + strand, within AMB_RS02595at 539.452 kb on + strand, within AMB_RS02595at 539.452 kb on + strand, within AMB_RS02595at 539.453 kb on - strand, within AMB_RS02595at 539.453 kb on - strand, within AMB_RS02595at 539.456 kb on + strand, within AMB_RS02595at 539.665 kb on + strand, within AMB_RS02595at 539.665 kb on + strand, within AMB_RS02595at 539.665 kb on + strand, within AMB_RS02595at 539.666 kb on - strand, within AMB_RS02595

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_1
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536,747 + AMB_RS02585 0.63 +0.0
536,748 - AMB_RS02585 0.63 -0.2
536,748 - AMB_RS02585 0.63 -0.4
536,748 - AMB_RS02585 0.63 -0.6
536,748 - AMB_RS02585 0.63 -0.0
536,797 - AMB_RS02585 0.68 -1.4
537,101 + -0.5
537,102 - -0.5
537,563 + AMB_RS02590 0.26 -0.9
537,563 + AMB_RS02590 0.26 -2.2
537,563 + AMB_RS02590 0.26 +1.0
537,563 + AMB_RS02590 0.26 +0.1
537,564 - AMB_RS02590 0.26 +0.1
537,564 - AMB_RS02590 0.26 -0.1
537,564 - AMB_RS02590 0.26 -0.4
537,564 - AMB_RS02590 0.26 -0.2
537,564 - AMB_RS02590 0.26 -0.9
537,795 - AMB_RS02590 0.40 -0.3
537,795 - AMB_RS02590 0.40 +0.5
538,130 + AMB_RS02590 0.60 +1.0
538,131 - AMB_RS02590 0.60 -0.6
538,131 - AMB_RS02590 0.60 -0.6
538,595 + AMB_RS02590 0.88 -0.3
538,662 - -0.5
538,662 - -1.0
538,662 - -0.5
538,662 - -0.2
538,703 + -0.4
538,703 + -0.6
538,703 + -0.4
538,703 + -0.2
538,704 - -1.1
538,704 - +0.6
538,874 + -0.3
538,874 + -0.2
538,874 + -1.1
538,874 + +0.2
538,874 + -0.3
538,874 + +0.1
538,875 - -1.2
538,875 - -0.6
538,937 + +0.8
538,937 + -2.6
538,937 + +1.7
538,937 + -0.8
538,937 + -0.2
538,938 - -1.4
539,245 + +1.3
539,245 + +0.0
539,246 - +1.0
539,246 - -0.2
539,246 - +0.2
539,246 - +0.6
539,246 - +0.7
539,440 + AMB_RS02595 0.15 -0.6
539,440 + AMB_RS02595 0.15 -0.7
539,452 + AMB_RS02595 0.16 -1.1
539,452 + AMB_RS02595 0.16 +1.6
539,452 + AMB_RS02595 0.16 -1.1
539,452 + AMB_RS02595 0.16 -2.6
539,453 - AMB_RS02595 0.16 -0.2
539,453 - AMB_RS02595 0.16 -0.8
539,456 + AMB_RS02595 0.16 +0.3
539,665 + AMB_RS02595 0.24 +0.2
539,665 + AMB_RS02595 0.24 -0.8
539,665 + AMB_RS02595 0.24 -0.3
539,666 - AMB_RS02595 0.24 -0.2

Or see this region's nucleotide sequence