Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02275

Experiment: 150_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS23115 and AMB_RS02270 are separated by 5 nucleotidesAMB_RS02270 and AMB_RS02275 are separated by 15 nucleotidesAMB_RS02275 and AMB_RS02280 are separated by 3 nucleotides AMB_RS23115: AMB_RS23115 - HAMP domain-containing protein, at 482,415 to 484,079 _RS23115 AMB_RS02270: AMB_RS02270 - hypothetical protein, at 484,085 to 484,429 _RS02270 AMB_RS02275: AMB_RS02275 - hypothetical protein, at 484,445 to 485,080 _RS02275 AMB_RS02280: AMB_RS02280 - hybrid sensor histidine kinase/response regulator, at 485,084 to 487,267 _RS02280 Position (kb) 484 485 486Strain fitness (log2 ratio) -2 -1 0 1at 483.541 kb on + strand, within AMB_RS23115at 483.541 kb on + strand, within AMB_RS23115at 483.541 kb on + strand, within AMB_RS23115at 483.542 kb on - strand, within AMB_RS23115at 483.542 kb on - strand, within AMB_RS23115at 483.619 kb on + strand, within AMB_RS23115at 483.620 kb on - strand, within AMB_RS23115at 483.620 kb on - strand, within AMB_RS23115at 483.620 kb on - strand, within AMB_RS23115at 483.716 kb on - strand, within AMB_RS23115at 483.841 kb on + strand, within AMB_RS23115at 483.842 kb on - strand, within AMB_RS23115at 483.892 kb on + strand, within AMB_RS23115at 483.893 kb on - strand, within AMB_RS23115at 484.326 kb on + strand, within AMB_RS02270at 484.326 kb on + strand, within AMB_RS02270at 484.327 kb on - strand, within AMB_RS02270at 484.327 kb on - strand, within AMB_RS02270at 484.446 kb on + strandat 484.446 kb on + strandat 484.446 kb on + strandat 484.446 kb on + strandat 484.447 kb on - strandat 484.447 kb on - strandat 484.447 kb on - strandat 484.447 kb on - strandat 484.447 kb on - strandat 484.447 kb on - strandat 484.527 kb on + strand, within AMB_RS02275at 484.528 kb on - strand, within AMB_RS02275at 484.599 kb on + strand, within AMB_RS02275at 484.600 kb on - strand, within AMB_RS02275at 484.600 kb on - strand, within AMB_RS02275at 484.600 kb on - strand, within AMB_RS02275at 484.755 kb on + strand, within AMB_RS02275at 484.756 kb on - strand, within AMB_RS02275at 484.756 kb on - strand, within AMB_RS02275at 484.756 kb on - strand, within AMB_RS02275at 484.756 kb on - strand, within AMB_RS02275at 484.791 kb on + strand, within AMB_RS02275at 484.791 kb on + strand, within AMB_RS02275at 484.791 kb on + strand, within AMB_RS02275at 484.791 kb on + strand, within AMB_RS02275at 484.792 kb on - strand, within AMB_RS02275at 484.792 kb on - strand, within AMB_RS02275at 484.792 kb on - strand, within AMB_RS02275at 484.792 kb on - strand, within AMB_RS02275at 484.792 kb on - strand, within AMB_RS02275at 484.872 kb on + strand, within AMB_RS02275at 484.873 kb on - strand, within AMB_RS02275at 484.873 kb on - strand, within AMB_RS02275at 484.873 kb on - strand, within AMB_RS02275at 484.895 kb on + strand, within AMB_RS02275

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_1
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483,541 + AMB_RS23115 0.68 +0.3
483,541 + AMB_RS23115 0.68 +0.1
483,541 + AMB_RS23115 0.68 +0.0
483,542 - AMB_RS23115 0.68 +0.3
483,542 - AMB_RS23115 0.68 +0.3
483,619 + AMB_RS23115 0.72 +0.1
483,620 - AMB_RS23115 0.72 -0.1
483,620 - AMB_RS23115 0.72 -1.0
483,620 - AMB_RS23115 0.72 -0.8
483,716 - AMB_RS23115 0.78 +0.1
483,841 + AMB_RS23115 0.86 +1.0
483,842 - AMB_RS23115 0.86 -0.9
483,892 + AMB_RS23115 0.89 -0.6
483,893 - AMB_RS23115 0.89 -0.3
484,326 + AMB_RS02270 0.70 -0.8
484,326 + AMB_RS02270 0.70 +0.5
484,327 - AMB_RS02270 0.70 -0.2
484,327 - AMB_RS02270 0.70 -0.2
484,446 + +0.1
484,446 + -0.2
484,446 + -0.4
484,446 + -1.6
484,447 - -0.1
484,447 - -0.6
484,447 - +0.1
484,447 - -0.5
484,447 - -0.4
484,447 - -0.5
484,527 + AMB_RS02275 0.13 -0.5
484,528 - AMB_RS02275 0.13 +0.6
484,599 + AMB_RS02275 0.24 +0.4
484,600 - AMB_RS02275 0.24 -2.7
484,600 - AMB_RS02275 0.24 -0.6
484,600 - AMB_RS02275 0.24 -0.6
484,755 + AMB_RS02275 0.49 -0.5
484,756 - AMB_RS02275 0.49 -0.4
484,756 - AMB_RS02275 0.49 -0.3
484,756 - AMB_RS02275 0.49 +0.4
484,756 - AMB_RS02275 0.49 -1.2
484,791 + AMB_RS02275 0.54 +0.1
484,791 + AMB_RS02275 0.54 +0.1
484,791 + AMB_RS02275 0.54 +0.0
484,791 + AMB_RS02275 0.54 +0.5
484,792 - AMB_RS02275 0.55 -0.8
484,792 - AMB_RS02275 0.55 -1.9
484,792 - AMB_RS02275 0.55 -0.4
484,792 - AMB_RS02275 0.55 -0.4
484,792 - AMB_RS02275 0.55 -0.3
484,872 + AMB_RS02275 0.67 -0.1
484,873 - AMB_RS02275 0.67 -1.4
484,873 - AMB_RS02275 0.67 -0.4
484,873 - AMB_RS02275 0.67 -1.4
484,895 + AMB_RS02275 0.71 -0.2

Or see this region's nucleotide sequence