Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01425

Experiment: 150_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01410 and AMB_RS01415 overlap by 47 nucleotidesAMB_RS01415 and AMB_RS01420 are separated by 107 nucleotidesAMB_RS01420 and AMB_RS01425 are separated by 50 nucleotidesAMB_RS01425 and AMB_RS01430 are separated by 74 nucleotidesAMB_RS01430 and AMB_RS01435 are separated by 57 nucleotides AMB_RS01410: AMB_RS01410 - cobalt ABC transporter, at 308,902 to 309,696 _RS01410 AMB_RS01415: AMB_RS01415 - rhodanese-like domain-containing protein, at 309,650 to 310,153 _RS01415 AMB_RS01420: AMB_RS01420 - hypothetical protein, at 310,261 to 310,524 _RS01420 AMB_RS01425: AMB_RS01425 - bifunctional aldolase/short-chain dehydrogenase, at 310,575 to 312,614 _RS01425 AMB_RS01430: AMB_RS01430 - hypothetical protein, at 312,689 to 312,892 _RS01430 AMB_RS01435: AMB_RS01435 - M23 family peptidase, at 312,950 to 313,864 _RS01435 Position (kb) 310 311 312 313Strain fitness (log2 ratio) -3 -2 -1 0 1at 309.578 kb on + strand, within AMB_RS01410at 309.578 kb on + strand, within AMB_RS01410at 309.691 kb on + strandat 310.054 kb on + strand, within AMB_RS01415at 310.199 kb on - strandat 310.199 kb on - strandat 310.199 kb on - strandat 310.203 kb on + strandat 310.203 kb on + strandat 310.203 kb on + strandat 310.203 kb on + strandat 310.203 kb on + strandat 310.203 kb on + strandat 310.203 kb on + strandat 310.203 kb on + strandat 310.203 kb on + strandat 310.203 kb on + strandat 310.203 kb on + strandat 310.203 kb on + strandat 310.204 kb on - strandat 310.204 kb on - strandat 310.204 kb on - strandat 310.204 kb on - strandat 310.204 kb on - strandat 310.270 kb on - strandat 310.270 kb on - strandat 310.408 kb on + strand, within AMB_RS01420at 310.408 kb on + strand, within AMB_RS01420at 310.409 kb on - strand, within AMB_RS01420at 310.428 kb on + strand, within AMB_RS01420at 310.428 kb on + strand, within AMB_RS01420at 310.428 kb on + strand, within AMB_RS01420at 310.429 kb on - strand, within AMB_RS01420at 310.429 kb on - strand, within AMB_RS01420at 310.714 kb on + strandat 310.714 kb on + strandat 310.714 kb on + strandat 310.714 kb on + strandat 310.714 kb on + strandat 310.714 kb on + strandat 310.714 kb on + strandat 310.714 kb on + strandat 310.714 kb on + strandat 310.715 kb on - strandat 310.715 kb on - strandat 310.715 kb on - strandat 310.715 kb on - strandat 310.715 kb on - strandat 310.715 kb on - strandat 310.715 kb on - strandat 310.715 kb on - strandat 310.715 kb on - strandat 310.715 kb on - strandat 310.844 kb on - strand, within AMB_RS01425at 311.380 kb on + strand, within AMB_RS01425at 311.381 kb on - strand, within AMB_RS01425at 311.381 kb on - strand, within AMB_RS01425at 311.605 kb on + strand, within AMB_RS01425at 311.605 kb on + strand, within AMB_RS01425at 311.614 kb on + strand, within AMB_RS01425at 311.614 kb on + strand, within AMB_RS01425at 311.614 kb on + strand, within AMB_RS01425at 311.615 kb on - strand, within AMB_RS01425at 311.615 kb on - strand, within AMB_RS01425at 311.615 kb on - strand, within AMB_RS01425at 311.615 kb on - strand, within AMB_RS01425at 311.615 kb on - strand, within AMB_RS01425at 311.755 kb on + strand, within AMB_RS01425at 311.782 kb on + strand, within AMB_RS01425at 311.782 kb on + strand, within AMB_RS01425at 311.782 kb on + strand, within AMB_RS01425at 311.783 kb on - strand, within AMB_RS01425at 311.783 kb on - strand, within AMB_RS01425at 311.783 kb on - strand, within AMB_RS01425at 311.977 kb on + strand, within AMB_RS01425at 311.977 kb on + strand, within AMB_RS01425at 312.058 kb on + strand, within AMB_RS01425at 312.059 kb on - strand, within AMB_RS01425at 312.059 kb on - strand, within AMB_RS01425at 312.103 kb on + strand, within AMB_RS01425at 312.103 kb on + strand, within AMB_RS01425at 312.103 kb on + strand, within AMB_RS01425at 312.103 kb on + strand, within AMB_RS01425at 312.103 kb on + strand, within AMB_RS01425at 312.104 kb on - strand, within AMB_RS01425at 312.108 kb on + strand, within AMB_RS01425at 312.108 kb on + strand, within AMB_RS01425at 312.108 kb on + strand, within AMB_RS01425at 312.108 kb on + strand, within AMB_RS01425at 312.108 kb on + strand, within AMB_RS01425at 312.108 kb on + strand, within AMB_RS01425at 312.109 kb on - strand, within AMB_RS01425at 312.109 kb on - strand, within AMB_RS01425at 312.109 kb on - strand, within AMB_RS01425at 312.109 kb on - strand, within AMB_RS01425at 312.109 kb on - strand, within AMB_RS01425at 312.109 kb on - strand, within AMB_RS01425at 312.109 kb on - strand, within AMB_RS01425at 312.112 kb on + strand, within AMB_RS01425at 312.112 kb on + strand, within AMB_RS01425at 312.112 kb on + strand, within AMB_RS01425at 312.112 kb on + strand, within AMB_RS01425at 312.112 kb on + strand, within AMB_RS01425at 312.112 kb on + strand, within AMB_RS01425at 312.113 kb on - strand, within AMB_RS01425at 312.113 kb on - strand, within AMB_RS01425at 312.113 kb on - strand, within AMB_RS01425at 312.113 kb on - strand, within AMB_RS01425at 312.113 kb on - strand, within AMB_RS01425at 312.130 kb on + strand, within AMB_RS01425at 312.130 kb on + strand, within AMB_RS01425at 312.130 kb on + strand, within AMB_RS01425at 312.130 kb on + strand, within AMB_RS01425at 312.131 kb on - strand, within AMB_RS01425at 312.289 kb on + strand, within AMB_RS01425at 312.289 kb on + strand, within AMB_RS01425at 312.467 kb on + strandat 312.467 kb on + strandat 312.467 kb on + strandat 312.467 kb on + strandat 312.523 kb on + strandat 312.523 kb on + strandat 312.523 kb on + strandat 312.523 kb on + strandat 312.524 kb on - strandat 312.652 kb on + strandat 312.653 kb on - strandat 312.655 kb on + strandat 312.655 kb on + strandat 312.655 kb on + strandat 312.656 kb on - strandat 312.656 kb on - strandat 312.841 kb on + strand, within AMB_RS01430at 312.841 kb on + strand, within AMB_RS01430at 312.841 kb on + strand, within AMB_RS01430at 312.842 kb on - strand, within AMB_RS01430at 312.842 kb on - strand, within AMB_RS01430at 312.842 kb on - strand, within AMB_RS01430at 312.842 kb on - strand, within AMB_RS01430at 312.842 kb on - strand, within AMB_RS01430at 312.910 kb on + strandat 312.927 kb on + strandat 312.997 kb on + strandat 312.997 kb on + strandat 312.997 kb on + strandat 312.998 kb on - strandat 313.155 kb on + strand, within AMB_RS01435at 313.155 kb on + strand, within AMB_RS01435at 313.155 kb on + strand, within AMB_RS01435at 313.155 kb on + strand, within AMB_RS01435at 313.155 kb on + strand, within AMB_RS01435at 313.156 kb on - strand, within AMB_RS01435at 313.156 kb on - strand, within AMB_RS01435at 313.156 kb on - strand, within AMB_RS01435at 313.156 kb on - strand, within AMB_RS01435at 313.156 kb on - strand, within AMB_RS01435at 313.156 kb on - strand, within AMB_RS01435at 313.319 kb on - strand, within AMB_RS01435at 313.319 kb on - strand, within AMB_RS01435at 313.320 kb on + strand, within AMB_RS01435at 313.320 kb on + strand, within AMB_RS01435at 313.320 kb on + strand, within AMB_RS01435at 313.320 kb on + strand, within AMB_RS01435at 313.321 kb on - strand, within AMB_RS01435at 313.321 kb on - strand, within AMB_RS01435at 313.386 kb on + strand, within AMB_RS01435

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_1
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309,578 + AMB_RS01410 0.85 -0.1
309,578 + AMB_RS01410 0.85 -0.3
309,691 + +0.6
310,054 + AMB_RS01415 0.80 -0.1
310,199 - -0.4
310,199 - -0.7
310,199 - +0.3
310,203 + -0.1
310,203 + -2.8
310,203 + -0.4
310,203 + -0.6
310,203 + -0.6
310,203 + -1.9
310,203 + -0.2
310,203 + -0.3
310,203 + +0.2
310,203 + -0.6
310,203 + +0.4
310,203 + -0.6
310,204 - -0.1
310,204 - +0.2
310,204 - -0.1
310,204 - -0.1
310,204 - +0.1
310,270 - +0.7
310,270 - +0.6
310,408 + AMB_RS01420 0.56 +0.3
310,408 + AMB_RS01420 0.56 +0.9
310,409 - AMB_RS01420 0.56 -1.0
310,428 + AMB_RS01420 0.63 -0.5
310,428 + AMB_RS01420 0.63 +0.4
310,428 + AMB_RS01420 0.63 -0.6
310,429 - AMB_RS01420 0.64 -0.0
310,429 - AMB_RS01420 0.64 +0.8
310,714 + -3.2
310,714 + -0.2
310,714 + -0.5
310,714 + -0.1
310,714 + -0.4
310,714 + -0.3
310,714 + -0.6
310,714 + +1.0
310,714 + -0.1
310,715 - -0.7
310,715 - -0.8
310,715 - -1.8
310,715 - -0.8
310,715 - -1.1
310,715 - +0.7
310,715 - -0.3
310,715 - +0.8
310,715 - -0.6
310,715 - +0.1
310,844 - AMB_RS01425 0.13 -0.4
311,380 + AMB_RS01425 0.39 -0.4
311,381 - AMB_RS01425 0.40 +0.1
311,381 - AMB_RS01425 0.40 -1.7
311,605 + AMB_RS01425 0.50 +0.3
311,605 + AMB_RS01425 0.50 +1.4
311,614 + AMB_RS01425 0.51 +0.7
311,614 + AMB_RS01425 0.51 +0.8
311,614 + AMB_RS01425 0.51 +0.9
311,615 - AMB_RS01425 0.51 +0.8
311,615 - AMB_RS01425 0.51 -1.2
311,615 - AMB_RS01425 0.51 +0.4
311,615 - AMB_RS01425 0.51 -0.5
311,615 - AMB_RS01425 0.51 -1.3
311,755 + AMB_RS01425 0.58 +1.3
311,782 + AMB_RS01425 0.59 -0.1
311,782 + AMB_RS01425 0.59 -1.2
311,782 + AMB_RS01425 0.59 -0.2
311,783 - AMB_RS01425 0.59 -0.3
311,783 - AMB_RS01425 0.59 +0.4
311,783 - AMB_RS01425 0.59 +0.1
311,977 + AMB_RS01425 0.69 -0.4
311,977 + AMB_RS01425 0.69 -0.2
312,058 + AMB_RS01425 0.73 -0.2
312,059 - AMB_RS01425 0.73 -0.4
312,059 - AMB_RS01425 0.73 -0.3
312,103 + AMB_RS01425 0.75 +0.5
312,103 + AMB_RS01425 0.75 -0.2
312,103 + AMB_RS01425 0.75 -0.5
312,103 + AMB_RS01425 0.75 -0.8
312,103 + AMB_RS01425 0.75 +0.4
312,104 - AMB_RS01425 0.75 -1.3
312,108 + AMB_RS01425 0.75 +0.0
312,108 + AMB_RS01425 0.75 -0.3
312,108 + AMB_RS01425 0.75 -1.6
312,108 + AMB_RS01425 0.75 -0.9
312,108 + AMB_RS01425 0.75 -1.8
312,108 + AMB_RS01425 0.75 -0.3
312,109 - AMB_RS01425 0.75 -0.9
312,109 - AMB_RS01425 0.75 -0.9
312,109 - AMB_RS01425 0.75 -0.6
312,109 - AMB_RS01425 0.75 -1.2
312,109 - AMB_RS01425 0.75 -0.0
312,109 - AMB_RS01425 0.75 +0.1
312,109 - AMB_RS01425 0.75 +0.2
312,112 + AMB_RS01425 0.75 -2.9
312,112 + AMB_RS01425 0.75 +0.7
312,112 + AMB_RS01425 0.75 -0.3
312,112 + AMB_RS01425 0.75 -1.4
312,112 + AMB_RS01425 0.75 -1.6
312,112 + AMB_RS01425 0.75 -0.7
312,113 - AMB_RS01425 0.75 +0.4
312,113 - AMB_RS01425 0.75 +0.0
312,113 - AMB_RS01425 0.75 +0.6
312,113 - AMB_RS01425 0.75 -0.2
312,113 - AMB_RS01425 0.75 -0.7
312,130 + AMB_RS01425 0.76 +0.4
312,130 + AMB_RS01425 0.76 +0.4
312,130 + AMB_RS01425 0.76 -2.2
312,130 + AMB_RS01425 0.76 +0.5
312,131 - AMB_RS01425 0.76 -1.2
312,289 + AMB_RS01425 0.84 -0.5
312,289 + AMB_RS01425 0.84 -1.2
312,467 + -0.6
312,467 + -0.8
312,467 + +0.4
312,467 + -0.3
312,523 + -0.7
312,523 + +0.4
312,523 + -0.4
312,523 + -0.1
312,524 - -1.6
312,652 + -0.1
312,653 - +0.2
312,655 + -0.5
312,655 + +0.2
312,655 + -0.6
312,656 - -0.1
312,656 - -0.1
312,841 + AMB_RS01430 0.75 +1.3
312,841 + AMB_RS01430 0.75 -0.1
312,841 + AMB_RS01430 0.75 -0.3
312,842 - AMB_RS01430 0.75 -1.2
312,842 - AMB_RS01430 0.75 -0.4
312,842 - AMB_RS01430 0.75 +0.4
312,842 - AMB_RS01430 0.75 +0.7
312,842 - AMB_RS01430 0.75 -0.2
312,910 + +0.5
312,927 + -2.9
312,997 + +0.9
312,997 + -0.6
312,997 + -0.8
312,998 - -0.1
313,155 + AMB_RS01435 0.22 +1.0
313,155 + AMB_RS01435 0.22 -0.9
313,155 + AMB_RS01435 0.22 -0.3
313,155 + AMB_RS01435 0.22 -0.0
313,155 + AMB_RS01435 0.22 -0.2
313,156 - AMB_RS01435 0.23 -0.6
313,156 - AMB_RS01435 0.23 +0.7
313,156 - AMB_RS01435 0.23 -0.1
313,156 - AMB_RS01435 0.23 -0.6
313,156 - AMB_RS01435 0.23 +0.6
313,156 - AMB_RS01435 0.23 -0.3
313,319 - AMB_RS01435 0.40 +0.3
313,319 - AMB_RS01435 0.40 -0.5
313,320 + AMB_RS01435 0.40 -1.1
313,320 + AMB_RS01435 0.40 -0.6
313,320 + AMB_RS01435 0.40 +0.8
313,320 + AMB_RS01435 0.40 +0.4
313,321 - AMB_RS01435 0.41 -0.1
313,321 - AMB_RS01435 0.41 -0.9
313,386 + AMB_RS01435 0.48 -0.5

Or see this region's nucleotide sequence