Experiment: 150_initial_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS00950 and AMB_RS00955 are separated by 107 nucleotides AMB_RS00955 and AMB_RS00960 overlap by 14 nucleotides AMB_RS00960 and AMB_RS00965 overlap by 4 nucleotides
AMB_RS00950: AMB_RS00950 - Serine phosphatase RsbU, at 214,901 to 216,592
_RS00950
AMB_RS00955: AMB_RS00955 - ATP-binding protein, at 216,700 to 218,016
_RS00955
AMB_RS00960: AMB_RS00960 - DNA-binding response regulator, at 218,003 to 218,674
_RS00960
AMB_RS00965: AMB_RS00965 - membrane protein, at 218,671 to 218,961
_RS00965
Position (kb) 216
217
218
219 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 215.977 kb on - strand, within AMB_RS00950 at 215.977 kb on - strand, within AMB_RS00950 at 216.057 kb on + strand, within AMB_RS00950 at 216.057 kb on + strand, within AMB_RS00950 at 216.058 kb on - strand, within AMB_RS00950 at 216.058 kb on - strand, within AMB_RS00950 at 216.325 kb on + strand, within AMB_RS00950 at 216.325 kb on + strand, within AMB_RS00950 at 216.325 kb on + strand, within AMB_RS00950 at 216.325 kb on + strand, within AMB_RS00950 at 216.325 kb on + strand, within AMB_RS00950 at 216.326 kb on - strand, within AMB_RS00950 at 216.326 kb on - strand, within AMB_RS00950 at 216.326 kb on - strand, within AMB_RS00950 at 216.326 kb on - strand, within AMB_RS00950 at 216.326 kb on - strand, within AMB_RS00950 at 216.326 kb on - strand, within AMB_RS00950 at 216.326 kb on - strand, within AMB_RS00950 at 216.327 kb on + strand, within AMB_RS00950 at 216.327 kb on + strand, within AMB_RS00950 at 216.327 kb on + strand, within AMB_RS00950 at 216.328 kb on - strand, within AMB_RS00950 at 216.328 kb on - strand, within AMB_RS00950 at 216.328 kb on - strand, within AMB_RS00950 at 216.328 kb on - strand, within AMB_RS00950 at 216.328 kb on - strand, within AMB_RS00950 at 216.328 kb on - strand, within AMB_RS00950 at 216.328 kb on - strand, within AMB_RS00950 at 216.328 kb on - strand, within AMB_RS00950 at 216.408 kb on + strand, within AMB_RS00950 at 216.408 kb on + strand, within AMB_RS00950 at 216.409 kb on - strand, within AMB_RS00950 at 216.583 kb on + strand at 216.584 kb on - strand at 216.670 kb on + strand at 216.670 kb on + strand at 216.671 kb on - strand at 216.681 kb on + strand at 216.682 kb on - strand at 216.682 kb on - strand at 218.139 kb on + strand, within AMB_RS00960 at 218.139 kb on + strand, within AMB_RS00960 at 218.139 kb on + strand, within AMB_RS00960 at 218.139 kb on + strand, within AMB_RS00960 at 218.140 kb on - strand, within AMB_RS00960 at 218.140 kb on - strand, within AMB_RS00960 at 218.140 kb on - strand, within AMB_RS00960 at 218.382 kb on + strand, within AMB_RS00960 at 218.382 kb on + strand, within AMB_RS00960 at 218.383 kb on - strand, within AMB_RS00960 at 218.383 kb on - strand, within AMB_RS00960 at 218.383 kb on - strand, within AMB_RS00960 at 218.541 kb on + strand, within AMB_RS00960 at 218.541 kb on + strand, within AMB_RS00960 at 218.542 kb on - strand, within AMB_RS00960 at 218.717 kb on + strand, within AMB_RS00965 at 218.717 kb on + strand, within AMB_RS00965 at 218.720 kb on + strand, within AMB_RS00965 at 218.720 kb on + strand, within AMB_RS00965 at 218.720 kb on + strand, within AMB_RS00965 at 218.720 kb on + strand, within AMB_RS00965
Per-strain Table
Position Strand Gene LocusTag Fraction 150_initial_1 remove 215,977 - AMB_RS00950 0.64 -0.5 215,977 - AMB_RS00950 0.64 +0.1 216,057 + AMB_RS00950 0.68 -0.1 216,057 + AMB_RS00950 0.68 -0.6 216,058 - AMB_RS00950 0.68 -0.2 216,058 - AMB_RS00950 0.68 -0.0 216,325 + AMB_RS00950 0.84 -0.0 216,325 + AMB_RS00950 0.84 -0.0 216,325 + AMB_RS00950 0.84 +0.4 216,325 + AMB_RS00950 0.84 +1.0 216,325 + AMB_RS00950 0.84 -0.3 216,326 - AMB_RS00950 0.84 -0.8 216,326 - AMB_RS00950 0.84 -2.8 216,326 - AMB_RS00950 0.84 +0.2 216,326 - AMB_RS00950 0.84 +0.0 216,326 - AMB_RS00950 0.84 +0.7 216,326 - AMB_RS00950 0.84 -0.3 216,326 - AMB_RS00950 0.84 +0.4 216,327 + AMB_RS00950 0.84 -0.5 216,327 + AMB_RS00950 0.84 -0.4 216,327 + AMB_RS00950 0.84 -3.3 216,328 - AMB_RS00950 0.84 -0.2 216,328 - AMB_RS00950 0.84 +0.8 216,328 - AMB_RS00950 0.84 +0.2 216,328 - AMB_RS00950 0.84 +1.7 216,328 - AMB_RS00950 0.84 -0.6 216,328 - AMB_RS00950 0.84 -0.1 216,328 - AMB_RS00950 0.84 +0.4 216,328 - AMB_RS00950 0.84 -0.5 216,408 + AMB_RS00950 0.89 -1.0 216,408 + AMB_RS00950 0.89 -0.4 216,409 - AMB_RS00950 0.89 -0.0 216,583 + -0.3 216,584 - +0.0 216,670 + -0.6 216,670 + -2.0 216,671 - +0.2 216,681 + +0.7 216,682 - -0.2 216,682 - +1.4 218,139 + AMB_RS00960 0.20 +1.1 218,139 + AMB_RS00960 0.20 +1.6 218,139 + AMB_RS00960 0.20 +0.3 218,139 + AMB_RS00960 0.20 -0.3 218,140 - AMB_RS00960 0.20 +0.0 218,140 - AMB_RS00960 0.20 -0.0 218,140 - AMB_RS00960 0.20 +0.4 218,382 + AMB_RS00960 0.56 +0.4 218,382 + AMB_RS00960 0.56 -0.3 218,383 - AMB_RS00960 0.57 -0.7 218,383 - AMB_RS00960 0.57 -0.0 218,383 - AMB_RS00960 0.57 -1.1 218,541 + AMB_RS00960 0.80 +0.2 218,541 + AMB_RS00960 0.80 +0.2 218,542 - AMB_RS00960 0.80 +1.7 218,717 + AMB_RS00965 0.16 -1.5 218,717 + AMB_RS00965 0.16 -0.7 218,720 + AMB_RS00965 0.17 -0.7 218,720 + AMB_RS00965 0.17 -0.0 218,720 + AMB_RS00965 0.17 -0.2 218,720 + AMB_RS00965 0.17 +0.6
Or see this region's nucleotide sequence