Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20230 and ABIE41_RS20235 are separated by 14 nucleotides ABIE41_RS20235 and ABIE41_RS20240 are separated by 89 nucleotides ABIE41_RS20240 and ABIE41_RS20245 are separated by 66 nucleotides
ABIE41_RS20230: ABIE41_RS20230 - bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase, at 4,157,744 to 4,159,381
_RS20230
ABIE41_RS20235: ABIE41_RS20235 - fumarylacetoacetate hydrolase family protein, at 4,159,396 to 4,160,244
_RS20235
ABIE41_RS20240: ABIE41_RS20240 - tripartite tricarboxylate transporter substrate-binding protein, at 4,160,334 to 4,161,311
_RS20240
ABIE41_RS20245: ABIE41_RS20245 - MBL fold metallo-hydrolase, at 4,161,378 to 4,162,421
_RS20245
Position (kb) 4160
4161
4162 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4159.371 kb on + strand at 4159.639 kb on + strand, within ABIE41_RS20235 at 4159.640 kb on - strand, within ABIE41_RS20235 at 4159.810 kb on + strand, within ABIE41_RS20235 at 4159.811 kb on - strand, within ABIE41_RS20235 at 4159.850 kb on - strand, within ABIE41_RS20235 at 4159.858 kb on + strand, within ABIE41_RS20235 at 4159.858 kb on + strand, within ABIE41_RS20235 at 4159.859 kb on - strand, within ABIE41_RS20235 at 4159.860 kb on - strand, within ABIE41_RS20235 at 4159.989 kb on - strand, within ABIE41_RS20235 at 4159.989 kb on - strand, within ABIE41_RS20235 at 4160.074 kb on + strand, within ABIE41_RS20235 at 4160.074 kb on + strand, within ABIE41_RS20235 at 4160.074 kb on + strand, within ABIE41_RS20235 at 4160.074 kb on + strand, within ABIE41_RS20235 at 4160.075 kb on - strand, within ABIE41_RS20235 at 4160.075 kb on - strand, within ABIE41_RS20235 at 4160.075 kb on - strand, within ABIE41_RS20235 at 4160.075 kb on - strand, within ABIE41_RS20235 at 4160.520 kb on + strand, within ABIE41_RS20240 at 4160.520 kb on + strand, within ABIE41_RS20240 at 4160.520 kb on + strand, within ABIE41_RS20240 at 4160.520 kb on + strand, within ABIE41_RS20240 at 4160.521 kb on - strand, within ABIE41_RS20240 at 4160.521 kb on - strand, within ABIE41_RS20240 at 4160.521 kb on - strand, within ABIE41_RS20240 at 4160.521 kb on - strand, within ABIE41_RS20240 at 4160.521 kb on - strand, within ABIE41_RS20240 at 4160.521 kb on - strand, within ABIE41_RS20240 at 4160.592 kb on + strand, within ABIE41_RS20240 at 4160.639 kb on + strand, within ABIE41_RS20240 at 4160.640 kb on - strand, within ABIE41_RS20240 at 4160.658 kb on + strand, within ABIE41_RS20240 at 4160.658 kb on + strand, within ABIE41_RS20240 at 4160.659 kb on - strand, within ABIE41_RS20240 at 4160.884 kb on - strand, within ABIE41_RS20240 at 4161.322 kb on + strand at 4161.322 kb on + strand at 4161.323 kb on - strand at 4161.326 kb on + strand at 4161.326 kb on + strand at 4161.608 kb on - strand, within ABIE41_RS20245 at 4161.608 kb on - strand, within ABIE41_RS20245 at 4161.639 kb on - strand, within ABIE41_RS20245 at 4161.706 kb on + strand, within ABIE41_RS20245 at 4161.707 kb on - strand, within ABIE41_RS20245 at 4161.973 kb on + strand, within ABIE41_RS20245 at 4161.973 kb on + strand, within ABIE41_RS20245 at 4161.973 kb on + strand, within ABIE41_RS20245 at 4161.973 kb on + strand, within ABIE41_RS20245 at 4161.974 kb on - strand, within ABIE41_RS20245 at 4161.974 kb on - strand, within ABIE41_RS20245 at 4161.974 kb on - strand, within ABIE41_RS20245 at 4162.043 kb on - strand, within ABIE41_RS20245 at 4162.127 kb on + strand, within ABIE41_RS20245 at 4162.128 kb on - strand, within ABIE41_RS20245
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 4,159,371 + -0.3 4,159,639 + ABIE41_RS20235 0.29 +0.3 4,159,640 - ABIE41_RS20235 0.29 +1.1 4,159,810 + ABIE41_RS20235 0.49 -0.7 4,159,811 - ABIE41_RS20235 0.49 -1.3 4,159,850 - ABIE41_RS20235 0.53 +0.2 4,159,858 + ABIE41_RS20235 0.54 -0.8 4,159,858 + ABIE41_RS20235 0.54 +0.1 4,159,859 - ABIE41_RS20235 0.55 +0.7 4,159,860 - ABIE41_RS20235 0.55 -0.5 4,159,989 - ABIE41_RS20235 0.70 +2.6 4,159,989 - ABIE41_RS20235 0.70 -0.7 4,160,074 + ABIE41_RS20235 0.80 -0.3 4,160,074 + ABIE41_RS20235 0.80 +0.5 4,160,074 + ABIE41_RS20235 0.80 -2.3 4,160,074 + ABIE41_RS20235 0.80 +0.1 4,160,075 - ABIE41_RS20235 0.80 -1.6 4,160,075 - ABIE41_RS20235 0.80 +1.5 4,160,075 - ABIE41_RS20235 0.80 -2.1 4,160,075 - ABIE41_RS20235 0.80 +0.0 4,160,520 + ABIE41_RS20240 0.19 -0.6 4,160,520 + ABIE41_RS20240 0.19 -2.9 4,160,520 + ABIE41_RS20240 0.19 +1.7 4,160,520 + ABIE41_RS20240 0.19 -1.1 4,160,521 - ABIE41_RS20240 0.19 -0.3 4,160,521 - ABIE41_RS20240 0.19 +0.6 4,160,521 - ABIE41_RS20240 0.19 -0.5 4,160,521 - ABIE41_RS20240 0.19 -0.3 4,160,521 - ABIE41_RS20240 0.19 -0.9 4,160,521 - ABIE41_RS20240 0.19 -0.6 4,160,592 + ABIE41_RS20240 0.26 +1.1 4,160,639 + ABIE41_RS20240 0.31 -0.8 4,160,640 - ABIE41_RS20240 0.31 +0.1 4,160,658 + ABIE41_RS20240 0.33 +1.4 4,160,658 + ABIE41_RS20240 0.33 +0.7 4,160,659 - ABIE41_RS20240 0.33 +1.3 4,160,884 - ABIE41_RS20240 0.56 +0.4 4,161,322 + -2.0 4,161,322 + -0.2 4,161,323 - -0.7 4,161,326 + -0.2 4,161,326 + +0.2 4,161,608 - ABIE41_RS20245 0.22 +0.2 4,161,608 - ABIE41_RS20245 0.22 +0.5 4,161,639 - ABIE41_RS20245 0.25 +0.3 4,161,706 + ABIE41_RS20245 0.31 -0.9 4,161,707 - ABIE41_RS20245 0.32 -2.3 4,161,973 + ABIE41_RS20245 0.57 -2.4 4,161,973 + ABIE41_RS20245 0.57 +0.6 4,161,973 + ABIE41_RS20245 0.57 -0.0 4,161,973 + ABIE41_RS20245 0.57 -0.4 4,161,974 - ABIE41_RS20245 0.57 +1.3 4,161,974 - ABIE41_RS20245 0.57 -0.1 4,161,974 - ABIE41_RS20245 0.57 +1.4 4,162,043 - ABIE41_RS20245 0.64 -0.1 4,162,127 + ABIE41_RS20245 0.72 -1.3 4,162,128 - ABIE41_RS20245 0.72 -0.1
Or see this region's nucleotide sequence