Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS08785 and ABIE41_RS08790 are separated by 345 nucleotides ABIE41_RS08790 and ABIE41_RS08795 overlap by 47 nucleotides ABIE41_RS08795 and ABIE41_RS08800 are separated by 490 nucleotides
ABIE41_RS08785: ABIE41_RS08785 - Swt1 family HEPN domain-containing protein, at 1,821,355 to 1,821,909
_RS08785
ABIE41_RS08790: ABIE41_RS08790 - hypothetical protein, at 1,822,255 to 1,822,425
_RS08790
ABIE41_RS08795: ABIE41_RS08795 - DUF5343 domain-containing protein, at 1,822,379 to 1,822,576
_RS08795
ABIE41_RS08800: ABIE41_RS08800 - DUF559 domain-containing protein, at 1,823,067 to 1,823,405
_RS08800
Position (kb)
1822
1823 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1821.293 kb on - strand at 1821.638 kb on - strand, within ABIE41_RS08785 at 1821.838 kb on + strand, within ABIE41_RS08785 at 1821.839 kb on - strand, within ABIE41_RS08785 at 1821.956 kb on - strand at 1821.983 kb on - strand at 1822.027 kb on + strand at 1822.040 kb on - strand at 1822.561 kb on - strand at 1822.561 kb on - strand at 1822.590 kb on + strand at 1822.648 kb on + strand at 1822.695 kb on + strand at 1822.695 kb on + strand at 1822.696 kb on - strand at 1822.704 kb on + strand at 1822.704 kb on + strand at 1822.705 kb on - strand at 1822.705 kb on - strand at 1822.769 kb on - strand at 1822.953 kb on - strand at 1823.068 kb on + strand at 1823.191 kb on + strand, within ABIE41_RS08800 at 1823.192 kb on - strand, within ABIE41_RS08800 at 1823.223 kb on + strand, within ABIE41_RS08800 at 1823.223 kb on + strand, within ABIE41_RS08800 at 1823.223 kb on + strand, within ABIE41_RS08800 at 1823.224 kb on - strand, within ABIE41_RS08800 at 1823.224 kb on - strand, within ABIE41_RS08800 at 1823.270 kb on - strand, within ABIE41_RS08800 at 1823.270 kb on - strand, within ABIE41_RS08800
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 1,821,293 - -1.1 1,821,638 - ABIE41_RS08785 0.51 -1.4 1,821,838 + ABIE41_RS08785 0.87 +1.2 1,821,839 - ABIE41_RS08785 0.87 -0.1 1,821,956 - -2.5 1,821,983 - -0.2 1,822,027 + +0.9 1,822,040 - +0.8 1,822,561 - -2.0 1,822,561 - +0.0 1,822,590 + +0.6 1,822,648 + -1.1 1,822,695 + +0.6 1,822,695 + -1.9 1,822,696 - +1.9 1,822,704 + -2.3 1,822,704 + +0.9 1,822,705 - -1.3 1,822,705 - -1.4 1,822,769 - -0.6 1,822,953 - +0.9 1,823,068 + +1.7 1,823,191 + ABIE41_RS08800 0.37 +1.2 1,823,192 - ABIE41_RS08800 0.37 -1.7 1,823,223 + ABIE41_RS08800 0.46 -4.5 1,823,223 + ABIE41_RS08800 0.46 -0.4 1,823,223 + ABIE41_RS08800 0.46 +2.1 1,823,224 - ABIE41_RS08800 0.46 -2.5 1,823,224 - ABIE41_RS08800 0.46 +0.5 1,823,270 - ABIE41_RS08800 0.60 +2.7 1,823,270 - ABIE41_RS08800 0.60 +0.8
Or see this region's nucleotide sequence