Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS26195

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS26185 and ABIE40_RS26190 are separated by 116 nucleotidesABIE40_RS26190 and ABIE40_RS26195 overlap by 1 nucleotidesABIE40_RS26195 and ABIE40_RS26200 are separated by 53 nucleotidesABIE40_RS26200 and ABIE40_RS26205 are separated by 3 nucleotides ABIE40_RS26185: ABIE40_RS26185 - pseudoazurin, at 1,419,898 to 1,420,341 _RS26185 ABIE40_RS26190: ABIE40_RS26190 - adenosylmethionine decarboxylase, at 1,420,458 to 1,420,934 _RS26190 ABIE40_RS26195: ABIE40_RS26195 - fused MFS/spermidine synthase, at 1,420,934 to 1,421,836 _RS26195 ABIE40_RS26200: ABIE40_RS26200 - hypothetical protein, at 1,421,890 to 1,422,039 _RS26200 ABIE40_RS26205: ABIE40_RS26205 - hypothetical protein, at 1,422,043 to 1,422,870 _RS26205 Position (kb) 1420 1421 1422Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1420.186 kb on + strand, within ABIE40_RS26185at 1420.186 kb on + strand, within ABIE40_RS26185at 1420.187 kb on - strand, within ABIE40_RS26185at 1420.187 kb on - strand, within ABIE40_RS26185at 1420.340 kb on - strandat 1420.340 kb on - strandat 1420.358 kb on + strandat 1420.406 kb on + strandat 1420.407 kb on - strandat 1420.409 kb on - strandat 1420.409 kb on - strandat 1420.456 kb on - strandat 1420.533 kb on + strand, within ABIE40_RS26190at 1420.533 kb on + strand, within ABIE40_RS26190at 1420.534 kb on - strand, within ABIE40_RS26190at 1420.652 kb on + strand, within ABIE40_RS26190at 1420.652 kb on + strand, within ABIE40_RS26190at 1420.653 kb on - strand, within ABIE40_RS26190at 1420.678 kb on + strand, within ABIE40_RS26190at 1420.678 kb on + strand, within ABIE40_RS26190at 1420.803 kb on + strand, within ABIE40_RS26190at 1420.818 kb on - strand, within ABIE40_RS26190at 1420.818 kb on - strand, within ABIE40_RS26190at 1420.818 kb on - strand, within ABIE40_RS26190at 1421.003 kb on + strandat 1421.054 kb on - strand, within ABIE40_RS26195at 1421.054 kb on - strand, within ABIE40_RS26195at 1421.054 kb on - strand, within ABIE40_RS26195at 1421.117 kb on + strand, within ABIE40_RS26195at 1421.118 kb on - strand, within ABIE40_RS26195at 1421.118 kb on - strand, within ABIE40_RS26195at 1421.118 kb on - strand, within ABIE40_RS26195at 1421.186 kb on - strand, within ABIE40_RS26195at 1421.186 kb on - strand, within ABIE40_RS26195at 1421.189 kb on + strand, within ABIE40_RS26195at 1421.189 kb on + strand, within ABIE40_RS26195at 1421.189 kb on + strand, within ABIE40_RS26195at 1421.189 kb on + strand, within ABIE40_RS26195at 1421.190 kb on - strand, within ABIE40_RS26195at 1421.190 kb on - strand, within ABIE40_RS26195at 1421.255 kb on + strand, within ABIE40_RS26195at 1421.255 kb on + strand, within ABIE40_RS26195at 1421.480 kb on + strand, within ABIE40_RS26195at 1421.480 kb on + strand, within ABIE40_RS26195at 1421.481 kb on - strand, within ABIE40_RS26195at 1421.499 kb on - strand, within ABIE40_RS26195at 1421.499 kb on - strand, within ABIE40_RS26195at 1421.499 kb on - strand, within ABIE40_RS26195at 1421.582 kb on + strand, within ABIE40_RS26195at 1421.582 kb on + strand, within ABIE40_RS26195at 1421.582 kb on + strand, within ABIE40_RS26195at 1421.583 kb on - strand, within ABIE40_RS26195at 1421.583 kb on - strand, within ABIE40_RS26195at 1421.583 kb on - strand, within ABIE40_RS26195at 1421.583 kb on - strand, within ABIE40_RS26195at 1421.583 kb on - strand, within ABIE40_RS26195at 1421.583 kb on - strand, within ABIE40_RS26195at 1421.583 kb on - strand, within ABIE40_RS26195at 1421.584 kb on + strand, within ABIE40_RS26195at 1421.584 kb on + strand, within ABIE40_RS26195at 1421.584 kb on + strand, within ABIE40_RS26195at 1421.584 kb on + strand, within ABIE40_RS26195at 1421.584 kb on + strand, within ABIE40_RS26195at 1421.585 kb on - strand, within ABIE40_RS26195at 1421.585 kb on - strand, within ABIE40_RS26195at 1421.585 kb on - strand, within ABIE40_RS26195at 1421.585 kb on - strand, within ABIE40_RS26195at 1421.585 kb on - strand, within ABIE40_RS26195at 1421.585 kb on - strand, within ABIE40_RS26195at 1421.585 kb on - strand, within ABIE40_RS26195at 1421.672 kb on + strand, within ABIE40_RS26195at 1421.672 kb on + strand, within ABIE40_RS26195at 1421.672 kb on + strand, within ABIE40_RS26195at 1421.672 kb on + strand, within ABIE40_RS26195at 1421.673 kb on - strand, within ABIE40_RS26195at 1421.673 kb on - strand, within ABIE40_RS26195at 1421.673 kb on - strand, within ABIE40_RS26195at 1421.673 kb on - strand, within ABIE40_RS26195at 1421.717 kb on - strand, within ABIE40_RS26195at 1421.889 kb on + strandat 1421.889 kb on + strandat 1421.889 kb on + strandat 1421.889 kb on + strandat 1421.889 kb on + strandat 1421.889 kb on + strandat 1421.889 kb on + strandat 1421.889 kb on + strandat 1421.890 kb on - strandat 1421.890 kb on - strandat 1421.890 kb on - strandat 1421.890 kb on - strandat 1421.890 kb on - strandat 1421.890 kb on - strandat 1421.890 kb on - strandat 1421.890 kb on - strandat 1421.890 kb on - strandat 1421.972 kb on + strand, within ABIE40_RS26200at 1421.972 kb on + strand, within ABIE40_RS26200at 1421.973 kb on - strand, within ABIE40_RS26200at 1422.038 kb on - strandat 1422.136 kb on + strand, within ABIE40_RS26205at 1422.136 kb on + strand, within ABIE40_RS26205at 1422.136 kb on + strand, within ABIE40_RS26205at 1422.417 kb on + strand, within ABIE40_RS26205at 1422.468 kb on + strand, within ABIE40_RS26205at 1422.468 kb on + strand, within ABIE40_RS26205at 1422.469 kb on - strand, within ABIE40_RS26205at 1422.538 kb on + strand, within ABIE40_RS26205at 1422.538 kb on + strand, within ABIE40_RS26205at 1422.538 kb on + strand, within ABIE40_RS26205at 1422.538 kb on + strand, within ABIE40_RS26205at 1422.752 kb on - strand, within ABIE40_RS26205at 1422.752 kb on - strand, within ABIE40_RS26205at 1422.772 kb on - strand, within ABIE40_RS26205

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,420,186 + ABIE40_RS26185 0.65 -0.2
1,420,186 + ABIE40_RS26185 0.65 -0.4
1,420,187 - ABIE40_RS26185 0.65 +1.1
1,420,187 - ABIE40_RS26185 0.65 -0.7
1,420,340 - -0.2
1,420,340 - +0.1
1,420,358 + +3.7
1,420,406 + +0.1
1,420,407 - -2.4
1,420,409 - -1.5
1,420,409 - +0.3
1,420,456 - -0.5
1,420,533 + ABIE40_RS26190 0.16 -0.3
1,420,533 + ABIE40_RS26190 0.16 +0.2
1,420,534 - ABIE40_RS26190 0.16 -0.2
1,420,652 + ABIE40_RS26190 0.41 -0.8
1,420,652 + ABIE40_RS26190 0.41 -0.5
1,420,653 - ABIE40_RS26190 0.41 +1.7
1,420,678 + ABIE40_RS26190 0.46 -0.5
1,420,678 + ABIE40_RS26190 0.46 +5.1
1,420,803 + ABIE40_RS26190 0.72 -0.6
1,420,818 - ABIE40_RS26190 0.75 +0.1
1,420,818 - ABIE40_RS26190 0.75 -0.1
1,420,818 - ABIE40_RS26190 0.75 +0.1
1,421,003 + +0.9
1,421,054 - ABIE40_RS26195 0.13 +0.0
1,421,054 - ABIE40_RS26195 0.13 +0.2
1,421,054 - ABIE40_RS26195 0.13 +0.9
1,421,117 + ABIE40_RS26195 0.20 -0.1
1,421,118 - ABIE40_RS26195 0.20 +0.1
1,421,118 - ABIE40_RS26195 0.20 +0.3
1,421,118 - ABIE40_RS26195 0.20 +0.1
1,421,186 - ABIE40_RS26195 0.28 -0.5
1,421,186 - ABIE40_RS26195 0.28 -1.2
1,421,189 + ABIE40_RS26195 0.28 +0.7
1,421,189 + ABIE40_RS26195 0.28 +0.1
1,421,189 + ABIE40_RS26195 0.28 +0.2
1,421,189 + ABIE40_RS26195 0.28 -0.2
1,421,190 - ABIE40_RS26195 0.28 +0.1
1,421,190 - ABIE40_RS26195 0.28 -0.8
1,421,255 + ABIE40_RS26195 0.36 -0.9
1,421,255 + ABIE40_RS26195 0.36 -0.6
1,421,480 + ABIE40_RS26195 0.60 -0.6
1,421,480 + ABIE40_RS26195 0.60 -0.2
1,421,481 - ABIE40_RS26195 0.61 -0.7
1,421,499 - ABIE40_RS26195 0.63 +0.7
1,421,499 - ABIE40_RS26195 0.63 -0.8
1,421,499 - ABIE40_RS26195 0.63 -0.1
1,421,582 + ABIE40_RS26195 0.72 -0.3
1,421,582 + ABIE40_RS26195 0.72 +0.8
1,421,582 + ABIE40_RS26195 0.72 -1.0
1,421,583 - ABIE40_RS26195 0.72 +0.0
1,421,583 - ABIE40_RS26195 0.72 -0.9
1,421,583 - ABIE40_RS26195 0.72 +0.6
1,421,583 - ABIE40_RS26195 0.72 +0.2
1,421,583 - ABIE40_RS26195 0.72 -0.1
1,421,583 - ABIE40_RS26195 0.72 +1.6
1,421,583 - ABIE40_RS26195 0.72 -0.7
1,421,584 + ABIE40_RS26195 0.72 +0.2
1,421,584 + ABIE40_RS26195 0.72 +0.5
1,421,584 + ABIE40_RS26195 0.72 +0.2
1,421,584 + ABIE40_RS26195 0.72 -0.7
1,421,584 + ABIE40_RS26195 0.72 -1.1
1,421,585 - ABIE40_RS26195 0.72 +1.2
1,421,585 - ABIE40_RS26195 0.72 -0.5
1,421,585 - ABIE40_RS26195 0.72 -2.0
1,421,585 - ABIE40_RS26195 0.72 -0.5
1,421,585 - ABIE40_RS26195 0.72 -0.4
1,421,585 - ABIE40_RS26195 0.72 -0.5
1,421,585 - ABIE40_RS26195 0.72 +1.2
1,421,672 + ABIE40_RS26195 0.82 +0.1
1,421,672 + ABIE40_RS26195 0.82 +1.8
1,421,672 + ABIE40_RS26195 0.82 -0.5
1,421,672 + ABIE40_RS26195 0.82 +0.8
1,421,673 - ABIE40_RS26195 0.82 -0.4
1,421,673 - ABIE40_RS26195 0.82 +0.4
1,421,673 - ABIE40_RS26195 0.82 +0.1
1,421,673 - ABIE40_RS26195 0.82 -0.3
1,421,717 - ABIE40_RS26195 0.87 +0.6
1,421,889 + -1.0
1,421,889 + -2.3
1,421,889 + +0.1
1,421,889 + +0.4
1,421,889 + +0.3
1,421,889 + -0.4
1,421,889 + +1.1
1,421,889 + +2.1
1,421,890 - -0.3
1,421,890 - -0.2
1,421,890 - +0.2
1,421,890 - -0.5
1,421,890 - -0.2
1,421,890 - -0.1
1,421,890 - -0.9
1,421,890 - +0.5
1,421,890 - -0.2
1,421,972 + ABIE40_RS26200 0.55 -2.8
1,421,972 + ABIE40_RS26200 0.55 +0.3
1,421,973 - ABIE40_RS26200 0.55 +0.2
1,422,038 - -0.4
1,422,136 + ABIE40_RS26205 0.11 +0.2
1,422,136 + ABIE40_RS26205 0.11 -1.3
1,422,136 + ABIE40_RS26205 0.11 -0.7
1,422,417 + ABIE40_RS26205 0.45 -1.5
1,422,468 + ABIE40_RS26205 0.51 +0.3
1,422,468 + ABIE40_RS26205 0.51 +0.1
1,422,469 - ABIE40_RS26205 0.51 +1.6
1,422,538 + ABIE40_RS26205 0.60 -0.7
1,422,538 + ABIE40_RS26205 0.60 +0.2
1,422,538 + ABIE40_RS26205 0.60 +1.3
1,422,538 + ABIE40_RS26205 0.60 +0.1
1,422,752 - ABIE40_RS26205 0.86 -0.1
1,422,752 - ABIE40_RS26205 0.86 -1.2
1,422,772 - ABIE40_RS26205 0.88 -0.0

Or see this region's nucleotide sequence