Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS04475 and ABIE40_RS04480 overlap by 2 nucleotides ABIE40_RS04480 and ABIE40_RS04485 are separated by 207 nucleotides ABIE40_RS04485 and ABIE40_RS04490 overlap by 4 nucleotides
ABIE40_RS04475: ABIE40_RS04475 - phosphoadenylyl-sulfate reductase, at 881,808 to 882,551
_RS04475
ABIE40_RS04480: ABIE40_RS04480 - hypothetical protein, at 882,550 to 882,765
_RS04480
ABIE40_RS04485: ABIE40_RS04485 - Rrf2 family transcriptional regulator, at 882,973 to 883,419
_RS04485
ABIE40_RS04490: ABIE40_RS04490 - chloride channel protein, at 883,416 to 884,765
_RS04490
Position (kb) 882
883
884 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 882.004 kb on + strand, within ABIE40_RS04475 at 882.004 kb on + strand, within ABIE40_RS04475 at 882.004 kb on + strand, within ABIE40_RS04475 at 882.004 kb on + strand, within ABIE40_RS04475 at 882.004 kb on + strand, within ABIE40_RS04475 at 882.005 kb on - strand, within ABIE40_RS04475 at 882.005 kb on - strand, within ABIE40_RS04475 at 882.005 kb on - strand, within ABIE40_RS04475 at 882.005 kb on - strand, within ABIE40_RS04475 at 882.074 kb on - strand, within ABIE40_RS04475 at 882.217 kb on + strand, within ABIE40_RS04475 at 882.217 kb on + strand, within ABIE40_RS04475 at 882.235 kb on + strand, within ABIE40_RS04475 at 882.235 kb on + strand, within ABIE40_RS04475 at 882.235 kb on + strand, within ABIE40_RS04475 at 882.247 kb on + strand, within ABIE40_RS04475 at 882.247 kb on + strand, within ABIE40_RS04475 at 882.248 kb on - strand, within ABIE40_RS04475 at 882.248 kb on - strand, within ABIE40_RS04475 at 882.277 kb on + strand, within ABIE40_RS04475 at 882.277 kb on + strand, within ABIE40_RS04475 at 882.278 kb on - strand, within ABIE40_RS04475 at 882.298 kb on + strand, within ABIE40_RS04475 at 882.298 kb on + strand, within ABIE40_RS04475 at 882.298 kb on + strand, within ABIE40_RS04475 at 882.298 kb on + strand, within ABIE40_RS04475 at 882.299 kb on - strand, within ABIE40_RS04475 at 882.437 kb on + strand, within ABIE40_RS04475 at 882.437 kb on + strand, within ABIE40_RS04475 at 882.438 kb on - strand, within ABIE40_RS04475 at 882.492 kb on + strand at 882.493 kb on - strand at 882.536 kb on + strand at 882.536 kb on + strand at 882.536 kb on + strand at 882.537 kb on - strand at 882.537 kb on - strand at 882.537 kb on - strand at 882.537 kb on - strand at 882.542 kb on + strand at 882.632 kb on + strand, within ABIE40_RS04480 at 882.632 kb on + strand, within ABIE40_RS04480 at 882.632 kb on + strand, within ABIE40_RS04480 at 882.632 kb on + strand, within ABIE40_RS04480 at 882.632 kb on + strand, within ABIE40_RS04480 at 882.633 kb on - strand, within ABIE40_RS04480 at 882.633 kb on - strand, within ABIE40_RS04480 at 882.633 kb on - strand, within ABIE40_RS04480 at 882.633 kb on - strand, within ABIE40_RS04480 at 882.647 kb on - strand, within ABIE40_RS04480 at 882.647 kb on - strand, within ABIE40_RS04480 at 882.806 kb on - strand at 882.811 kb on + strand at 882.811 kb on + strand at 882.811 kb on + strand at 882.812 kb on - strand at 882.812 kb on - strand at 882.812 kb on - strand at 882.812 kb on - strand at 882.854 kb on + strand at 882.855 kb on - strand at 882.907 kb on + strand at 882.908 kb on - strand at 882.970 kb on - strand at 882.970 kb on - strand at 882.978 kb on + strand at 882.978 kb on + strand at 882.995 kb on - strand at 882.995 kb on - strand at 883.060 kb on - strand, within ABIE40_RS04485 at 883.060 kb on - strand, within ABIE40_RS04485 at 883.417 kb on + strand at 883.418 kb on - strand at 883.495 kb on + strand at 883.496 kb on - strand at 883.496 kb on - strand at 883.527 kb on + strand at 883.527 kb on + strand at 883.527 kb on + strand at 883.527 kb on + strand at 883.527 kb on + strand at 883.527 kb on + strand at 883.527 kb on + strand at 883.527 kb on + strand at 883.528 kb on - strand at 883.528 kb on - strand at 883.531 kb on + strand at 883.639 kb on + strand, within ABIE40_RS04490 at 883.850 kb on - strand, within ABIE40_RS04490 at 884.092 kb on + strand, within ABIE40_RS04490 at 884.092 kb on + strand, within ABIE40_RS04490 at 884.092 kb on + strand, within ABIE40_RS04490 at 884.093 kb on - strand, within ABIE40_RS04490 at 884.093 kb on - strand, within ABIE40_RS04490 at 884.093 kb on - strand, within ABIE40_RS04490 at 884.098 kb on + strand, within ABIE40_RS04490 at 884.098 kb on + strand, within ABIE40_RS04490 at 884.098 kb on + strand, within ABIE40_RS04490 at 884.098 kb on + strand, within ABIE40_RS04490 at 884.099 kb on - strand, within ABIE40_RS04490 at 884.099 kb on - strand, within ABIE40_RS04490 at 884.099 kb on - strand, within ABIE40_RS04490 at 884.099 kb on - strand, within ABIE40_RS04490 at 884.099 kb on - strand, within ABIE40_RS04490 at 884.099 kb on - strand, within ABIE40_RS04490 at 884.176 kb on + strand, within ABIE40_RS04490 at 884.176 kb on + strand, within ABIE40_RS04490 at 884.176 kb on + strand, within ABIE40_RS04490 at 884.176 kb on + strand, within ABIE40_RS04490 at 884.176 kb on + strand, within ABIE40_RS04490 at 884.177 kb on - strand, within ABIE40_RS04490 at 884.177 kb on - strand, within ABIE40_RS04490 at 884.177 kb on - strand, within ABIE40_RS04490 at 884.225 kb on + strand, within ABIE40_RS04490 at 884.226 kb on - strand, within ABIE40_RS04490 at 884.241 kb on + strand, within ABIE40_RS04490 at 884.242 kb on - strand, within ABIE40_RS04490 at 884.242 kb on - strand, within ABIE40_RS04490 at 884.242 kb on - strand, within ABIE40_RS04490 at 884.242 kb on - strand, within ABIE40_RS04490 at 884.242 kb on - strand, within ABIE40_RS04490
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 882,004 + ABIE40_RS04475 0.26 +0.1 882,004 + ABIE40_RS04475 0.26 -0.6 882,004 + ABIE40_RS04475 0.26 -1.9 882,004 + ABIE40_RS04475 0.26 -2.1 882,004 + ABIE40_RS04475 0.26 -0.4 882,005 - ABIE40_RS04475 0.26 -1.5 882,005 - ABIE40_RS04475 0.26 -1.5 882,005 - ABIE40_RS04475 0.26 -3.6 882,005 - ABIE40_RS04475 0.26 -1.3 882,074 - ABIE40_RS04475 0.36 -0.4 882,217 + ABIE40_RS04475 0.55 -3.8 882,217 + ABIE40_RS04475 0.55 -2.0 882,235 + ABIE40_RS04475 0.57 -1.9 882,235 + ABIE40_RS04475 0.57 -3.2 882,235 + ABIE40_RS04475 0.57 -2.5 882,247 + ABIE40_RS04475 0.59 -1.3 882,247 + ABIE40_RS04475 0.59 -0.5 882,248 - ABIE40_RS04475 0.59 -2.5 882,248 - ABIE40_RS04475 0.59 -3.8 882,277 + ABIE40_RS04475 0.63 -1.1 882,277 + ABIE40_RS04475 0.63 -1.5 882,278 - ABIE40_RS04475 0.63 -2.6 882,298 + ABIE40_RS04475 0.66 -2.2 882,298 + ABIE40_RS04475 0.66 -3.9 882,298 + ABIE40_RS04475 0.66 -1.9 882,298 + ABIE40_RS04475 0.66 +1.7 882,299 - ABIE40_RS04475 0.66 -1.5 882,437 + ABIE40_RS04475 0.85 -1.5 882,437 + ABIE40_RS04475 0.85 -0.9 882,438 - ABIE40_RS04475 0.85 -2.4 882,492 + -1.1 882,493 - -1.9 882,536 + -0.0 882,536 + -1.0 882,536 + +0.1 882,537 - +0.1 882,537 - -1.2 882,537 - -1.2 882,537 - -0.8 882,542 + -1.5 882,632 + ABIE40_RS04480 0.38 -1.8 882,632 + ABIE40_RS04480 0.38 -3.1 882,632 + ABIE40_RS04480 0.38 -2.6 882,632 + ABIE40_RS04480 0.38 -2.9 882,632 + ABIE40_RS04480 0.38 -0.5 882,633 - ABIE40_RS04480 0.38 -0.0 882,633 - ABIE40_RS04480 0.38 +0.1 882,633 - ABIE40_RS04480 0.38 +1.3 882,633 - ABIE40_RS04480 0.38 -0.3 882,647 - ABIE40_RS04480 0.45 +0.5 882,647 - ABIE40_RS04480 0.45 +0.0 882,806 - +0.2 882,811 + -3.5 882,811 + -0.6 882,811 + +0.9 882,812 - +0.7 882,812 - +0.0 882,812 - -0.8 882,812 - +0.5 882,854 + +0.3 882,855 - +1.5 882,907 + +0.4 882,908 - -0.4 882,970 - -0.4 882,970 - -0.3 882,978 + +0.4 882,978 + -1.0 882,995 - -1.1 882,995 - +0.9 883,060 - ABIE40_RS04485 0.19 -3.2 883,060 - ABIE40_RS04485 0.19 -0.8 883,417 + -0.5 883,418 - -1.1 883,495 + +0.5 883,496 - -0.6 883,496 - -0.0 883,527 + -0.9 883,527 + +0.1 883,527 + +0.3 883,527 + +1.1 883,527 + +1.3 883,527 + -0.1 883,527 + -1.5 883,527 + +0.0 883,528 - -0.1 883,528 - +0.1 883,531 + +2.9 883,639 + ABIE40_RS04490 0.17 -1.9 883,850 - ABIE40_RS04490 0.32 -0.1 884,092 + ABIE40_RS04490 0.50 +0.5 884,092 + ABIE40_RS04490 0.50 -1.6 884,092 + ABIE40_RS04490 0.50 -1.9 884,093 - ABIE40_RS04490 0.50 +0.8 884,093 - ABIE40_RS04490 0.50 +0.2 884,093 - ABIE40_RS04490 0.50 -0.3 884,098 + ABIE40_RS04490 0.51 +1.7 884,098 + ABIE40_RS04490 0.51 +0.7 884,098 + ABIE40_RS04490 0.51 +0.7 884,098 + ABIE40_RS04490 0.51 -0.9 884,099 - ABIE40_RS04490 0.51 -0.6 884,099 - ABIE40_RS04490 0.51 -0.5 884,099 - ABIE40_RS04490 0.51 +0.1 884,099 - ABIE40_RS04490 0.51 +0.5 884,099 - ABIE40_RS04490 0.51 +0.7 884,099 - ABIE40_RS04490 0.51 -0.1 884,176 + ABIE40_RS04490 0.56 -0.4 884,176 + ABIE40_RS04490 0.56 +0.4 884,176 + ABIE40_RS04490 0.56 -0.5 884,176 + ABIE40_RS04490 0.56 +0.7 884,176 + ABIE40_RS04490 0.56 +0.1 884,177 - ABIE40_RS04490 0.56 -0.3 884,177 - ABIE40_RS04490 0.56 +0.2 884,177 - ABIE40_RS04490 0.56 -0.2 884,225 + ABIE40_RS04490 0.60 +1.3 884,226 - ABIE40_RS04490 0.60 -0.2 884,241 + ABIE40_RS04490 0.61 -0.3 884,242 - ABIE40_RS04490 0.61 -0.2 884,242 - ABIE40_RS04490 0.61 -0.5 884,242 - ABIE40_RS04490 0.61 -1.2 884,242 - ABIE40_RS04490 0.61 -0.1 884,242 - ABIE40_RS04490 0.61 -1.1
Or see this region's nucleotide sequence