Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS01415

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS01410 and ABIE40_RS01415 are separated by 100 nucleotidesABIE40_RS01415 and ABIE40_RS01420 are separated by 132 nucleotidesABIE40_RS01420 and ABIE40_RS01425 are separated by 83 nucleotides ABIE40_RS01410: ABIE40_RS01410 - YifB family Mg chelatase-like AAA ATPase, at 275,645 to 277,177 _RS01410 ABIE40_RS01415: ABIE40_RS01415 - cysteine synthase A, at 277,278 to 278,240 _RS01415 ABIE40_RS01420: ABIE40_RS01420 - LysE family translocator, at 278,373 to 278,990 _RS01420 ABIE40_RS01425: ABIE40_RS01425 - cysteine hydrolase family protein, at 279,074 to 279,631 _RS01425 Position (kb) 277 278 279Strain fitness (log2 ratio) -2 -1 0 1 2at 276.644 kb on + strand, within ABIE40_RS01410at 276.644 kb on + strand, within ABIE40_RS01410at 276.715 kb on + strand, within ABIE40_RS01410at 276.716 kb on - strand, within ABIE40_RS01410at 276.716 kb on - strand, within ABIE40_RS01410at 276.716 kb on - strand, within ABIE40_RS01410at 276.716 kb on - strand, within ABIE40_RS01410at 276.749 kb on + strand, within ABIE40_RS01410at 276.750 kb on - strand, within ABIE40_RS01410at 276.750 kb on - strand, within ABIE40_RS01410at 276.928 kb on + strand, within ABIE40_RS01410at 276.929 kb on - strand, within ABIE40_RS01410at 276.929 kb on - strand, within ABIE40_RS01410at 276.974 kb on + strand, within ABIE40_RS01410at 276.974 kb on + strand, within ABIE40_RS01410at 276.974 kb on + strand, within ABIE40_RS01410at 276.975 kb on - strand, within ABIE40_RS01410at 276.975 kb on - strand, within ABIE40_RS01410at 277.049 kb on + strandat 277.187 kb on + strandat 277.187 kb on + strandat 277.187 kb on + strandat 277.187 kb on + strandat 277.188 kb on - strandat 277.208 kb on + strandat 277.209 kb on - strandat 277.209 kb on - strandat 277.255 kb on - strandat 277.262 kb on - strandat 277.268 kb on + strandat 277.315 kb on + strandat 277.316 kb on - strandat 277.501 kb on + strand, within ABIE40_RS01415at 277.502 kb on - strand, within ABIE40_RS01415at 278.075 kb on + strand, within ABIE40_RS01415at 278.209 kb on + strandat 278.209 kb on + strandat 278.210 kb on - strandat 278.210 kb on - strandat 278.210 kb on - strandat 278.255 kb on + strandat 278.255 kb on + strandat 278.255 kb on + strandat 278.255 kb on + strandat 278.276 kb on - strandat 278.276 kb on - strandat 278.276 kb on - strandat 278.345 kb on + strandat 278.393 kb on + strandat 278.394 kb on + strandat 278.495 kb on + strand, within ABIE40_RS01420at 278.495 kb on + strand, within ABIE40_RS01420at 278.495 kb on + strand, within ABIE40_RS01420at 278.495 kb on + strand, within ABIE40_RS01420at 278.495 kb on + strand, within ABIE40_RS01420at 278.495 kb on + strand, within ABIE40_RS01420at 278.495 kb on + strand, within ABIE40_RS01420at 278.496 kb on - strand, within ABIE40_RS01420at 278.496 kb on - strand, within ABIE40_RS01420at 278.496 kb on - strand, within ABIE40_RS01420at 278.496 kb on - strand, within ABIE40_RS01420at 278.496 kb on - strand, within ABIE40_RS01420at 278.496 kb on - strand, within ABIE40_RS01420at 278.496 kb on - strand, within ABIE40_RS01420at 278.496 kb on - strand, within ABIE40_RS01420at 278.496 kb on - strand, within ABIE40_RS01420at 278.496 kb on - strand, within ABIE40_RS01420at 278.496 kb on - strand, within ABIE40_RS01420at 278.496 kb on - strand, within ABIE40_RS01420at 278.496 kb on - strand, within ABIE40_RS01420at 278.496 kb on - strand, within ABIE40_RS01420at 278.496 kb on - strand, within ABIE40_RS01420at 278.496 kb on - strand, within ABIE40_RS01420at 278.497 kb on + strand, within ABIE40_RS01420at 278.497 kb on + strand, within ABIE40_RS01420at 278.497 kb on + strand, within ABIE40_RS01420at 278.497 kb on + strand, within ABIE40_RS01420at 278.498 kb on - strand, within ABIE40_RS01420at 278.498 kb on - strand, within ABIE40_RS01420at 278.498 kb on - strand, within ABIE40_RS01420at 278.498 kb on - strand, within ABIE40_RS01420at 278.498 kb on - strand, within ABIE40_RS01420at 278.498 kb on - strand, within ABIE40_RS01420at 278.538 kb on + strand, within ABIE40_RS01420at 278.551 kb on + strand, within ABIE40_RS01420at 278.552 kb on - strand, within ABIE40_RS01420at 278.552 kb on - strand, within ABIE40_RS01420at 278.605 kb on + strand, within ABIE40_RS01420at 278.605 kb on + strand, within ABIE40_RS01420at 278.605 kb on + strand, within ABIE40_RS01420at 278.605 kb on + strand, within ABIE40_RS01420at 278.605 kb on + strand, within ABIE40_RS01420at 278.606 kb on - strand, within ABIE40_RS01420at 278.638 kb on - strand, within ABIE40_RS01420at 278.693 kb on + strand, within ABIE40_RS01420at 278.728 kb on + strand, within ABIE40_RS01420at 278.728 kb on + strand, within ABIE40_RS01420at 278.737 kb on + strand, within ABIE40_RS01420at 278.738 kb on - strand, within ABIE40_RS01420at 278.746 kb on + strand, within ABIE40_RS01420at 278.746 kb on + strand, within ABIE40_RS01420at 278.747 kb on - strand, within ABIE40_RS01420at 278.747 kb on - strand, within ABIE40_RS01420at 278.747 kb on - strand, within ABIE40_RS01420at 278.747 kb on - strand, within ABIE40_RS01420at 278.833 kb on + strand, within ABIE40_RS01420at 278.833 kb on + strand, within ABIE40_RS01420at 278.833 kb on + strand, within ABIE40_RS01420at 278.833 kb on + strand, within ABIE40_RS01420at 278.833 kb on + strand, within ABIE40_RS01420at 278.833 kb on + strand, within ABIE40_RS01420at 278.833 kb on + strand, within ABIE40_RS01420at 278.834 kb on - strand, within ABIE40_RS01420at 278.964 kb on - strandat 278.964 kb on - strandat 278.964 kb on - strandat 278.964 kb on - strandat 278.965 kb on + strandat 279.013 kb on + strandat 279.017 kb on + strandat 279.017 kb on + strandat 279.017 kb on + strandat 279.017 kb on + strandat 279.017 kb on + strandat 279.018 kb on - strandat 279.018 kb on - strandat 279.018 kb on - strandat 279.018 kb on - strandat 279.018 kb on - strandat 279.164 kb on + strand, within ABIE40_RS01425at 279.164 kb on + strand, within ABIE40_RS01425at 279.164 kb on + strand, within ABIE40_RS01425at 279.164 kb on + strand, within ABIE40_RS01425at 279.165 kb on - strand, within ABIE40_RS01425at 279.232 kb on + strand, within ABIE40_RS01425

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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276,644 + ABIE40_RS01410 0.65 -1.1
276,644 + ABIE40_RS01410 0.65 -0.4
276,715 + ABIE40_RS01410 0.70 +0.2
276,716 - ABIE40_RS01410 0.70 -0.4
276,716 - ABIE40_RS01410 0.70 -0.2
276,716 - ABIE40_RS01410 0.70 +0.0
276,716 - ABIE40_RS01410 0.70 -0.1
276,749 + ABIE40_RS01410 0.72 -0.2
276,750 - ABIE40_RS01410 0.72 +0.1
276,750 - ABIE40_RS01410 0.72 -0.2
276,928 + ABIE40_RS01410 0.84 -0.6
276,929 - ABIE40_RS01410 0.84 +0.6
276,929 - ABIE40_RS01410 0.84 -1.0
276,974 + ABIE40_RS01410 0.87 +1.6
276,974 + ABIE40_RS01410 0.87 -0.4
276,974 + ABIE40_RS01410 0.87 +0.6
276,975 - ABIE40_RS01410 0.87 +0.2
276,975 - ABIE40_RS01410 0.87 +0.9
277,049 + -0.7
277,187 + -0.3
277,187 + +0.1
277,187 + +0.7
277,187 + -0.4
277,188 - -1.4
277,208 + +1.4
277,209 - -0.2
277,209 - +0.2
277,255 - +1.0
277,262 - -0.8
277,268 + -0.5
277,315 + +1.6
277,316 - -0.2
277,501 + ABIE40_RS01415 0.23 -0.3
277,502 - ABIE40_RS01415 0.23 -1.2
278,075 + ABIE40_RS01415 0.83 -1.5
278,209 + +0.4
278,209 + +1.1
278,210 - +0.2
278,210 - -1.1
278,210 - -1.2
278,255 + -0.6
278,255 + +1.2
278,255 + -0.4
278,255 + -1.8
278,276 - -0.0
278,276 - -1.9
278,276 - +1.1
278,345 + -0.1
278,393 + +0.4
278,394 + -1.1
278,495 + ABIE40_RS01420 0.20 -1.0
278,495 + ABIE40_RS01420 0.20 +0.1
278,495 + ABIE40_RS01420 0.20 +0.6
278,495 + ABIE40_RS01420 0.20 +0.1
278,495 + ABIE40_RS01420 0.20 -0.1
278,495 + ABIE40_RS01420 0.20 +0.3
278,495 + ABIE40_RS01420 0.20 +0.5
278,496 - ABIE40_RS01420 0.20 -0.1
278,496 - ABIE40_RS01420 0.20 +1.2
278,496 - ABIE40_RS01420 0.20 +0.3
278,496 - ABIE40_RS01420 0.20 +1.6
278,496 - ABIE40_RS01420 0.20 -0.4
278,496 - ABIE40_RS01420 0.20 +0.2
278,496 - ABIE40_RS01420 0.20 +0.7
278,496 - ABIE40_RS01420 0.20 +1.6
278,496 - ABIE40_RS01420 0.20 +0.3
278,496 - ABIE40_RS01420 0.20 -0.7
278,496 - ABIE40_RS01420 0.20 +0.4
278,496 - ABIE40_RS01420 0.20 -0.3
278,496 - ABIE40_RS01420 0.20 -1.9
278,496 - ABIE40_RS01420 0.20 -1.6
278,496 - ABIE40_RS01420 0.20 +2.0
278,496 - ABIE40_RS01420 0.20 -0.9
278,497 + ABIE40_RS01420 0.20 +0.1
278,497 + ABIE40_RS01420 0.20 +0.2
278,497 + ABIE40_RS01420 0.20 +1.8
278,497 + ABIE40_RS01420 0.20 -1.8
278,498 - ABIE40_RS01420 0.20 +0.3
278,498 - ABIE40_RS01420 0.20 -1.6
278,498 - ABIE40_RS01420 0.20 -0.1
278,498 - ABIE40_RS01420 0.20 -0.6
278,498 - ABIE40_RS01420 0.20 +0.3
278,498 - ABIE40_RS01420 0.20 +0.1
278,538 + ABIE40_RS01420 0.27 -0.6
278,551 + ABIE40_RS01420 0.29 +0.1
278,552 - ABIE40_RS01420 0.29 +1.2
278,552 - ABIE40_RS01420 0.29 -0.7
278,605 + ABIE40_RS01420 0.38 -0.8
278,605 + ABIE40_RS01420 0.38 -0.1
278,605 + ABIE40_RS01420 0.38 -0.2
278,605 + ABIE40_RS01420 0.38 -0.1
278,605 + ABIE40_RS01420 0.38 -0.7
278,606 - ABIE40_RS01420 0.38 +0.1
278,638 - ABIE40_RS01420 0.43 -0.5
278,693 + ABIE40_RS01420 0.52 +0.5
278,728 + ABIE40_RS01420 0.57 -0.9
278,728 + ABIE40_RS01420 0.57 +0.5
278,737 + ABIE40_RS01420 0.59 -0.2
278,738 - ABIE40_RS01420 0.59 +0.6
278,746 + ABIE40_RS01420 0.60 -0.4
278,746 + ABIE40_RS01420 0.60 -0.6
278,747 - ABIE40_RS01420 0.61 -0.1
278,747 - ABIE40_RS01420 0.61 -0.9
278,747 - ABIE40_RS01420 0.61 -0.9
278,747 - ABIE40_RS01420 0.61 +0.9
278,833 + ABIE40_RS01420 0.74 -1.1
278,833 + ABIE40_RS01420 0.74 +0.1
278,833 + ABIE40_RS01420 0.74 +0.4
278,833 + ABIE40_RS01420 0.74 -1.5
278,833 + ABIE40_RS01420 0.74 +0.9
278,833 + ABIE40_RS01420 0.74 +0.7
278,833 + ABIE40_RS01420 0.74 -0.9
278,834 - ABIE40_RS01420 0.75 -0.1
278,964 - -2.5
278,964 - -0.3
278,964 - -0.9
278,964 - -2.1
278,965 + -1.7
279,013 + -0.6
279,017 + +0.2
279,017 + +1.4
279,017 + -0.1
279,017 + +0.1
279,017 + -0.0
279,018 - -0.9
279,018 - +0.9
279,018 - -0.0
279,018 - +0.4
279,018 - -1.0
279,164 + ABIE40_RS01425 0.16 +0.2
279,164 + ABIE40_RS01425 0.16 +1.1
279,164 + ABIE40_RS01425 0.16 +1.4
279,164 + ABIE40_RS01425 0.16 +0.8
279,165 - ABIE40_RS01425 0.16 -2.5
279,232 + ABIE40_RS01425 0.28 +0.5

Or see this region's nucleotide sequence