Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS00655

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS00645 and ABIE40_RS00650 are separated by 5 nucleotidesABIE40_RS00650 and ABIE40_RS00655 are separated by 391 nucleotidesABIE40_RS00655 and ABIE40_RS00660 are separated by 105 nucleotides ABIE40_RS00645: ABIE40_RS00645 - nicotinate phosphoribosyltransferase, at 133,251 to 134,555 _RS00645 ABIE40_RS00650: ABIE40_RS00650 - DUF2735 domain-containing protein, at 134,561 to 134,755 _RS00650 ABIE40_RS00655: ABIE40_RS00655 - glutamine synthetase beta-grasp domain-containing protein, at 135,147 to 136,187 _RS00655 ABIE40_RS00660: ABIE40_RS00660 - DUF763 domain-containing protein, at 136,293 to 137,534 _RS00660 Position (kb) 135 136 137Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 134.295 kb on + strand, within ABIE40_RS00645at 134.295 kb on + strand, within ABIE40_RS00645at 134.295 kb on + strand, within ABIE40_RS00645at 134.295 kb on + strand, within ABIE40_RS00645at 134.295 kb on + strand, within ABIE40_RS00645at 134.295 kb on + strand, within ABIE40_RS00645at 134.295 kb on + strand, within ABIE40_RS00645at 134.295 kb on + strand, within ABIE40_RS00645at 134.296 kb on - strand, within ABIE40_RS00645at 134.296 kb on - strand, within ABIE40_RS00645at 134.296 kb on - strand, within ABIE40_RS00645at 134.296 kb on - strand, within ABIE40_RS00645at 134.616 kb on + strand, within ABIE40_RS00650at 134.616 kb on + strand, within ABIE40_RS00650at 134.617 kb on - strand, within ABIE40_RS00650at 134.617 kb on - strand, within ABIE40_RS00650at 134.718 kb on + strand, within ABIE40_RS00650at 134.758 kb on + strandat 134.759 kb on - strandat 134.759 kb on - strandat 134.771 kb on + strandat 134.772 kb on - strandat 134.775 kb on + strandat 134.775 kb on + strandat 134.775 kb on + strandat 134.776 kb on - strandat 134.776 kb on - strandat 134.776 kb on - strandat 134.776 kb on - strandat 134.781 kb on + strandat 134.802 kb on + strandat 134.803 kb on - strandat 134.842 kb on + strandat 134.867 kb on - strandat 135.068 kb on + strandat 135.080 kb on - strandat 135.080 kb on - strandat 135.156 kb on + strandat 135.156 kb on + strandat 135.156 kb on + strandat 135.156 kb on + strandat 135.156 kb on + strandat 135.156 kb on + strandat 135.156 kb on + strandat 135.157 kb on - strandat 135.157 kb on - strandat 135.157 kb on - strandat 135.157 kb on - strandat 135.159 kb on - strandat 135.159 kb on - strandat 135.159 kb on - strandat 135.169 kb on - strandat 135.186 kb on + strandat 135.187 kb on - strandat 135.187 kb on - strandat 135.187 kb on - strandat 135.187 kb on - strandat 135.197 kb on - strandat 135.342 kb on + strand, within ABIE40_RS00655at 135.389 kb on + strand, within ABIE40_RS00655at 135.389 kb on + strand, within ABIE40_RS00655at 135.390 kb on - strand, within ABIE40_RS00655at 135.390 kb on - strand, within ABIE40_RS00655at 135.408 kb on - strand, within ABIE40_RS00655at 135.481 kb on - strand, within ABIE40_RS00655at 135.481 kb on - strand, within ABIE40_RS00655at 135.489 kb on + strand, within ABIE40_RS00655at 135.489 kb on + strand, within ABIE40_RS00655at 135.549 kb on + strand, within ABIE40_RS00655at 135.549 kb on + strand, within ABIE40_RS00655at 135.549 kb on + strand, within ABIE40_RS00655at 135.549 kb on + strand, within ABIE40_RS00655at 135.552 kb on + strand, within ABIE40_RS00655at 135.553 kb on - strand, within ABIE40_RS00655at 135.553 kb on - strand, within ABIE40_RS00655at 135.638 kb on + strand, within ABIE40_RS00655at 135.638 kb on + strand, within ABIE40_RS00655at 135.741 kb on + strand, within ABIE40_RS00655at 135.741 kb on + strand, within ABIE40_RS00655at 135.742 kb on - strand, within ABIE40_RS00655at 135.742 kb on - strand, within ABIE40_RS00655at 135.742 kb on - strand, within ABIE40_RS00655at 135.742 kb on - strand, within ABIE40_RS00655at 135.786 kb on + strand, within ABIE40_RS00655at 135.786 kb on + strand, within ABIE40_RS00655at 135.787 kb on - strand, within ABIE40_RS00655at 135.831 kb on - strand, within ABIE40_RS00655at 135.855 kb on + strand, within ABIE40_RS00655at 135.855 kb on + strand, within ABIE40_RS00655at 135.855 kb on + strand, within ABIE40_RS00655at 135.855 kb on + strand, within ABIE40_RS00655at 135.855 kb on + strand, within ABIE40_RS00655at 135.855 kb on + strand, within ABIE40_RS00655at 135.856 kb on - strand, within ABIE40_RS00655at 135.856 kb on - strand, within ABIE40_RS00655at 135.856 kb on - strand, within ABIE40_RS00655at 135.856 kb on - strand, within ABIE40_RS00655at 135.856 kb on - strand, within ABIE40_RS00655at 135.856 kb on - strand, within ABIE40_RS00655at 135.856 kb on - strand, within ABIE40_RS00655at 135.882 kb on + strand, within ABIE40_RS00655at 135.939 kb on + strand, within ABIE40_RS00655at 136.005 kb on + strand, within ABIE40_RS00655at 136.006 kb on - strand, within ABIE40_RS00655at 136.006 kb on - strand, within ABIE40_RS00655at 136.065 kb on + strand, within ABIE40_RS00655at 136.066 kb on - strand, within ABIE40_RS00655at 136.066 kb on - strand, within ABIE40_RS00655at 136.066 kb on - strand, within ABIE40_RS00655at 136.066 kb on - strand, within ABIE40_RS00655at 136.074 kb on + strand, within ABIE40_RS00655at 136.074 kb on + strand, within ABIE40_RS00655at 136.113 kb on + strandat 136.191 kb on + strandat 136.280 kb on + strandat 136.281 kb on - strandat 136.281 kb on - strandat 136.281 kb on - strandat 136.281 kb on - strandat 136.282 kb on + strandat 136.283 kb on - strandat 136.283 kb on - strandat 136.725 kb on + strand, within ABIE40_RS00660at 136.725 kb on + strand, within ABIE40_RS00660at 136.813 kb on - strand, within ABIE40_RS00660

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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134,295 + ABIE40_RS00645 0.80 -0.2
134,295 + ABIE40_RS00645 0.80 -0.8
134,295 + ABIE40_RS00645 0.80 -0.0
134,295 + ABIE40_RS00645 0.80 -0.4
134,295 + ABIE40_RS00645 0.80 +0.2
134,295 + ABIE40_RS00645 0.80 +0.3
134,295 + ABIE40_RS00645 0.80 +2.1
134,295 + ABIE40_RS00645 0.80 -0.3
134,296 - ABIE40_RS00645 0.80 +1.3
134,296 - ABIE40_RS00645 0.80 -0.3
134,296 - ABIE40_RS00645 0.80 -0.8
134,296 - ABIE40_RS00645 0.80 +0.7
134,616 + ABIE40_RS00650 0.28 +1.9
134,616 + ABIE40_RS00650 0.28 +0.8
134,617 - ABIE40_RS00650 0.29 -0.8
134,617 - ABIE40_RS00650 0.29 +0.5
134,718 + ABIE40_RS00650 0.81 -0.3
134,758 + -0.1
134,759 - +0.4
134,759 - -0.9
134,771 + +1.5
134,772 - +0.3
134,775 + -0.5
134,775 + +0.5
134,775 + +0.3
134,776 - +1.0
134,776 - -0.3
134,776 - -1.1
134,776 - -0.2
134,781 + +1.7
134,802 + +0.3
134,803 - -0.1
134,842 + +1.9
134,867 - -0.6
135,068 + -0.4
135,080 - -1.5
135,080 - -1.1
135,156 + +0.3
135,156 + -0.5
135,156 + -0.3
135,156 + -0.0
135,156 + -0.9
135,156 + -0.1
135,156 + -2.8
135,157 - -0.9
135,157 - +1.9
135,157 - -0.6
135,157 - -0.1
135,159 - -0.7
135,159 - +0.4
135,159 - -0.8
135,169 - -0.4
135,186 + -2.6
135,187 - -0.8
135,187 - +0.4
135,187 - +0.4
135,187 - -0.5
135,197 - -0.4
135,342 + ABIE40_RS00655 0.19 +0.9
135,389 + ABIE40_RS00655 0.23 -0.6
135,389 + ABIE40_RS00655 0.23 -0.4
135,390 - ABIE40_RS00655 0.23 +1.2
135,390 - ABIE40_RS00655 0.23 -0.6
135,408 - ABIE40_RS00655 0.25 +0.1
135,481 - ABIE40_RS00655 0.32 -1.7
135,481 - ABIE40_RS00655 0.32 +1.4
135,489 + ABIE40_RS00655 0.33 -0.8
135,489 + ABIE40_RS00655 0.33 -1.2
135,549 + ABIE40_RS00655 0.39 -1.7
135,549 + ABIE40_RS00655 0.39 -0.5
135,549 + ABIE40_RS00655 0.39 -1.8
135,549 + ABIE40_RS00655 0.39 -0.1
135,552 + ABIE40_RS00655 0.39 -1.1
135,553 - ABIE40_RS00655 0.39 -1.1
135,553 - ABIE40_RS00655 0.39 -0.4
135,638 + ABIE40_RS00655 0.47 +1.9
135,638 + ABIE40_RS00655 0.47 +0.1
135,741 + ABIE40_RS00655 0.57 -2.1
135,741 + ABIE40_RS00655 0.57 +0.1
135,742 - ABIE40_RS00655 0.57 -2.1
135,742 - ABIE40_RS00655 0.57 +0.3
135,742 - ABIE40_RS00655 0.57 +0.4
135,742 - ABIE40_RS00655 0.57 -2.5
135,786 + ABIE40_RS00655 0.61 -0.0
135,786 + ABIE40_RS00655 0.61 -1.0
135,787 - ABIE40_RS00655 0.61 -0.9
135,831 - ABIE40_RS00655 0.66 -0.7
135,855 + ABIE40_RS00655 0.68 -1.1
135,855 + ABIE40_RS00655 0.68 -0.5
135,855 + ABIE40_RS00655 0.68 -1.4
135,855 + ABIE40_RS00655 0.68 -1.0
135,855 + ABIE40_RS00655 0.68 -0.7
135,855 + ABIE40_RS00655 0.68 +1.6
135,856 - ABIE40_RS00655 0.68 +1.0
135,856 - ABIE40_RS00655 0.68 -0.5
135,856 - ABIE40_RS00655 0.68 -1.4
135,856 - ABIE40_RS00655 0.68 -1.3
135,856 - ABIE40_RS00655 0.68 +0.0
135,856 - ABIE40_RS00655 0.68 +1.3
135,856 - ABIE40_RS00655 0.68 -1.4
135,882 + ABIE40_RS00655 0.71 +0.6
135,939 + ABIE40_RS00655 0.76 +0.5
136,005 + ABIE40_RS00655 0.82 -2.3
136,006 - ABIE40_RS00655 0.83 +1.5
136,006 - ABIE40_RS00655 0.83 -1.5
136,065 + ABIE40_RS00655 0.88 -0.9
136,066 - ABIE40_RS00655 0.88 -0.1
136,066 - ABIE40_RS00655 0.88 -0.6
136,066 - ABIE40_RS00655 0.88 -0.7
136,066 - ABIE40_RS00655 0.88 -0.3
136,074 + ABIE40_RS00655 0.89 +0.4
136,074 + ABIE40_RS00655 0.89 -1.3
136,113 + -0.5
136,191 + -0.4
136,280 + -0.7
136,281 - +0.5
136,281 - +1.6
136,281 - -0.4
136,281 - -0.7
136,282 + -0.5
136,283 - -2.0
136,283 - +2.4
136,725 + ABIE40_RS00660 0.35 +0.3
136,725 + ABIE40_RS00660 0.35 -0.2
136,813 - ABIE40_RS00660 0.42 +0.2

Or see this region's nucleotide sequence