Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28810

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28800 and ABID97_RS28805 are separated by 72 nucleotidesABID97_RS28805 and ABID97_RS28810 are separated by 87 nucleotidesABID97_RS28810 and ABID97_RS28815 are separated by 112 nucleotides ABID97_RS28800: ABID97_RS28800 - 3-keto-5-aminohexanoate cleavage protein, at 677,483 to 678,415 _RS28800 ABID97_RS28805: ABID97_RS28805 - SDR family oxidoreductase, at 678,488 to 679,270 _RS28805 ABID97_RS28810: ABID97_RS28810 - LysR substrate-binding domain-containing protein, at 679,358 to 680,317 _RS28810 ABID97_RS28815: ABID97_RS28815 - MBL fold metallo-hydrolase, at 680,430 to 681,317 _RS28815 Position (kb) 679 680 681Strain fitness (log2 ratio) -1 0 1at 679.596 kb on + strand, within ABID97_RS28810at 679.596 kb on + strand, within ABID97_RS28810at 680.713 kb on - strand, within ABID97_RS28815at 680.956 kb on - strand, within ABID97_RS28815at 680.956 kb on - strand, within ABID97_RS28815at 680.956 kb on - strand, within ABID97_RS28815at 681.172 kb on - strand, within ABID97_RS28815at 681.172 kb on - strand, within ABID97_RS28815at 681.172 kb on - strand, within ABID97_RS28815

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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679,596 + ABID97_RS28810 0.25 -1.1
679,596 + ABID97_RS28810 0.25 -0.7
680,713 - ABID97_RS28815 0.32 +0.2
680,956 - ABID97_RS28815 0.59 +0.2
680,956 - ABID97_RS28815 0.59 -0.1
680,956 - ABID97_RS28815 0.59 -0.3
681,172 - ABID97_RS28815 0.84 +0.0
681,172 - ABID97_RS28815 0.84 +0.5
681,172 - ABID97_RS28815 0.84 -0.0

Or see this region's nucleotide sequence