Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27735

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27730 and ABID97_RS27735 are separated by 26 nucleotidesABID97_RS27735 and ABID97_RS27740 overlap by 4 nucleotidesABID97_RS27740 and ABID97_RS27745 are separated by 7 nucleotides ABID97_RS27730: ABID97_RS27730 - ABC transporter substrate-binding protein, at 465,882 to 467,306 _RS27730 ABID97_RS27735: ABID97_RS27735 - ABC transporter permease, at 467,333 to 468,130 _RS27735 ABID97_RS27740: ABID97_RS27740 - ABC transporter ATP-binding protein, at 468,127 to 468,975 _RS27740 ABID97_RS27745: ABID97_RS27745 - HEAT repeat domain-containing protein, at 468,983 to 469,981 _RS27745 Position (kb) 467 468 469Strain fitness (log2 ratio) -1 0 1at 466.696 kb on - strand, within ABID97_RS27730at 466.744 kb on - strand, within ABID97_RS27730at 466.951 kb on - strand, within ABID97_RS27730at 467.978 kb on + strand, within ABID97_RS27735at 467.979 kb on - strand, within ABID97_RS27735at 467.993 kb on + strand, within ABID97_RS27735

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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466,696 - ABID97_RS27730 0.57 -0.4
466,744 - ABID97_RS27730 0.60 +0.1
466,951 - ABID97_RS27730 0.75 -0.2
467,978 + ABID97_RS27735 0.81 +1.0
467,979 - ABID97_RS27735 0.81 -0.2
467,993 + ABID97_RS27735 0.83 +0.7

Or see this region's nucleotide sequence