Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26555

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26550 and ABID97_RS26555 are separated by 43 nucleotidesABID97_RS26555 and ABID97_RS26560 are separated by 19 nucleotides ABID97_RS26550: ABID97_RS26550 - NADP-dependent malic enzyme, at 230,326 to 232,611 _RS26550 ABID97_RS26555: ABID97_RS26555 - lipoyl synthase, at 232,655 to 233,572 _RS26555 ABID97_RS26560: ABID97_RS26560 - dicarboxylate/amino acid:cation symporter, at 233,592 to 234,938 _RS26560 Position (kb) 232 233 234Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 231.868 kb on + strand, within ABID97_RS26550at 232.997 kb on + strand, within ABID97_RS26555at 232.997 kb on + strand, within ABID97_RS26555at 232.997 kb on + strand, within ABID97_RS26555at 232.997 kb on + strand, within ABID97_RS26555at 233.241 kb on - strand, within ABID97_RS26555at 233.441 kb on + strand, within ABID97_RS26555at 233.625 kb on + strandat 233.688 kb on + strandat 233.967 kb on + strand, within ABID97_RS26560at 234.180 kb on + strand, within ABID97_RS26560

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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231,868 + ABID97_RS26550 0.67 +0.4
232,997 + ABID97_RS26555 0.37 +3.4
232,997 + ABID97_RS26555 0.37 +3.5
232,997 + ABID97_RS26555 0.37 +1.1
232,997 + ABID97_RS26555 0.37 +4.9
233,241 - ABID97_RS26555 0.64 +3.0
233,441 + ABID97_RS26555 0.86 +6.2
233,625 + -0.4
233,688 + +1.1
233,967 + ABID97_RS26560 0.28 +1.5
234,180 + ABID97_RS26560 0.44 +0.4

Or see this region's nucleotide sequence