Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26105

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26100 and ABID97_RS26105 are separated by 152 nucleotidesABID97_RS26105 and ABID97_RS26110 overlap by 4 nucleotides ABID97_RS26100: ABID97_RS26100 - LysR family transcriptional regulator, at 143,999 to 144,895 _RS26100 ABID97_RS26105: ABID97_RS26105 - sterol desaturase family protein, at 145,048 to 145,953 _RS26105 ABID97_RS26110: ABID97_RS26110 - coniferyl aldehyde dehydrogenase, at 145,950 to 147,401 _RS26110 Position (kb) 145 146Strain fitness (log2 ratio) -1 0 1at 144.387 kb on + strand, within ABID97_RS26100at 145.399 kb on + strand, within ABID97_RS26105at 145.514 kb on - strand, within ABID97_RS26105at 145.690 kb on + strand, within ABID97_RS26105at 145.691 kb on - strand, within ABID97_RS26105at 145.831 kb on + strand, within ABID97_RS26105

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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144,387 + ABID97_RS26100 0.43 +0.0
145,399 + ABID97_RS26105 0.39 +0.0
145,514 - ABID97_RS26105 0.51 -0.3
145,690 + ABID97_RS26105 0.71 -0.9
145,691 - ABID97_RS26105 0.71 +0.1
145,831 + ABID97_RS26105 0.86 -1.1

Or see this region's nucleotide sequence