Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25985

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25980 and ABID97_RS25985 are separated by 150 nucleotidesABID97_RS25985 and ABID97_RS25990 are separated by 26 nucleotides ABID97_RS25980: ABID97_RS25980 - LysR family transcriptional regulator, at 119,526 to 120,488 _RS25980 ABID97_RS25985: ABID97_RS25985 - CaiB/BaiF CoA-transferase family protein, at 120,639 to 121,880 _RS25985 ABID97_RS25990: ABID97_RS25990 - aldehyde dehydrogenase, at 121,907 to 123,397 _RS25990 Position (kb) 120 121 122Strain fitness (log2 ratio) -1 0 1 2at 119.698 kb on + strand, within ABID97_RS25980at 119.698 kb on + strand, within ABID97_RS25980at 119.699 kb on - strand, within ABID97_RS25980at 119.876 kb on + strand, within ABID97_RS25980at 119.876 kb on + strandat 120.441 kb on + strandat 120.559 kb on + strandat 120.727 kb on + strandat 121.502 kb on + strand, within ABID97_RS25985at 121.502 kb on + strand, within ABID97_RS25985at 121.502 kb on + strand, within ABID97_RS25985at 121.578 kb on + strand, within ABID97_RS25985at 122.256 kb on - strand, within ABID97_RS25990at 122.627 kb on + strand, within ABID97_RS25990at 122.628 kb on - strand, within ABID97_RS25990

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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119,698 + ABID97_RS25980 0.18 +0.0
119,698 + ABID97_RS25980 0.18 +0.0
119,699 - ABID97_RS25980 0.18 +0.0
119,876 + ABID97_RS25980 0.36 +0.6
119,876 + +0.5
120,441 + +1.9
120,559 + +0.1
120,727 + -0.4
121,502 + ABID97_RS25985 0.69 +1.7
121,502 + ABID97_RS25985 0.69 +0.2
121,502 + ABID97_RS25985 0.69 +0.2
121,578 + ABID97_RS25985 0.76 +2.5
122,256 - ABID97_RS25990 0.23 -0.0
122,627 + ABID97_RS25990 0.48 -1.4
122,628 - ABID97_RS25990 0.48 -0.3

Or see this region's nucleotide sequence