Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25510

Experiment: a-Ketoglutaric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS25500 and ABID97_RS25505 overlap by 28 nucleotidesABID97_RS25505 and ABID97_RS25510 overlap by 4 nucleotidesABID97_RS25510 and ABID97_RS25515 overlap by 4 nucleotides ABID97_RS25500: ABID97_RS25500 - MarR family winged helix-turn-helix transcriptional regulator, at 18,690 to 18,953 _RS25500 ABID97_RS25505: ABID97_RS25505 - ABC transporter ATP-binding protein, at 18,926 to 19,714 _RS25505 ABID97_RS25510: ABID97_RS25510 - ABC transporter ATP-binding protein, at 19,711 to 20,466 _RS25510 ABID97_RS25515: ABID97_RS25515 - branched-chain amino acid ABC transporter permease, at 20,463 to 21,497 _RS25515 Position (kb) 19 20 21Strain fitness (log2 ratio) -1 0 1at 18.713 kb on + strandat 19.354 kb on - strand, within ABID97_RS25505at 19.739 kb on + strandat 19.878 kb on - strand, within ABID97_RS25510at 20.851 kb on + strand, within ABID97_RS25515at 21.004 kb on + strand, within ABID97_RS25515at 21.004 kb on + strand, within ABID97_RS25515at 21.005 kb on - strand, within ABID97_RS25515at 21.082 kb on + strand, within ABID97_RS25515at 21.364 kb on + strand, within ABID97_RS25515at 21.364 kb on + strand, within ABID97_RS25515at 21.365 kb on - strand, within ABID97_RS25515at 21.395 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
remove
18,713 + -0.1
19,354 - ABID97_RS25505 0.54 -0.2
19,739 + +0.3
19,878 - ABID97_RS25510 0.22 -0.9
20,851 + ABID97_RS25515 0.37 +0.4
21,004 + ABID97_RS25515 0.52 -1.0
21,004 + ABID97_RS25515 0.52 +0.0
21,005 - ABID97_RS25515 0.52 -0.2
21,082 + ABID97_RS25515 0.60 -0.1
21,364 + ABID97_RS25515 0.87 -0.2
21,364 + ABID97_RS25515 0.87 +0.3
21,365 - ABID97_RS25515 0.87 +1.1
21,395 - -0.1

Or see this region's nucleotide sequence