Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25270 and ABID97_RS25275 overlap by 4 nucleotides ABID97_RS25275 and ABID97_RS25280 are separated by 11 nucleotides ABID97_RS25280 and ABID97_RS25285 are separated by 6 nucleotides
ABID97_RS25270: ABID97_RS25270 - diacylglycerol kinase family protein, at 5,236,715 to 5,237,680
_RS25270
ABID97_RS25275: ABID97_RS25275 - metallophosphoesterase, at 5,237,677 to 5,238,501
_RS25275
ABID97_RS25280: ABID97_RS25280 - phosphatase PAP2 family protein, at 5,238,513 to 5,239,331
_RS25280
ABID97_RS25285: ABID97_RS25285 - asparaginase, at 5,239,338 to 5,240,408
_RS25285
Position (kb) 5238
5239
5240 Strain fitness (log2 ratio) -1
0
1
2
3 at 5237.936 kb on - strand, within ABID97_RS25275 at 5237.944 kb on + strand, within ABID97_RS25275 at 5237.945 kb on - strand, within ABID97_RS25275 at 5237.945 kb on - strand, within ABID97_RS25275 at 5238.277 kb on + strand, within ABID97_RS25275 at 5238.277 kb on + strand, within ABID97_RS25275 at 5238.278 kb on - strand, within ABID97_RS25275 at 5238.338 kb on + strand, within ABID97_RS25275 at 5238.461 kb on + strand at 5238.461 kb on + strand at 5238.462 kb on - strand at 5238.462 kb on - strand at 5238.462 kb on - strand at 5238.499 kb on + strand at 5238.747 kb on + strand, within ABID97_RS25280 at 5238.747 kb on + strand, within ABID97_RS25280 at 5238.747 kb on + strand, within ABID97_RS25280 at 5238.748 kb on - strand, within ABID97_RS25280 at 5238.748 kb on - strand, within ABID97_RS25280 at 5238.748 kb on - strand, within ABID97_RS25280 at 5239.101 kb on + strand, within ABID97_RS25280 at 5239.102 kb on - strand, within ABID97_RS25280 at 5239.116 kb on + strand, within ABID97_RS25280 at 5239.116 kb on + strand, within ABID97_RS25280 at 5239.116 kb on + strand, within ABID97_RS25280 at 5239.116 kb on + strand, within ABID97_RS25280 at 5239.117 kb on - strand, within ABID97_RS25280 at 5239.117 kb on - strand, within ABID97_RS25280 at 5239.117 kb on - strand, within ABID97_RS25280 at 5239.117 kb on - strand, within ABID97_RS25280 at 5239.297 kb on - strand at 5239.342 kb on + strand at 5239.342 kb on + strand at 5239.343 kb on - strand at 5239.343 kb on - strand at 5239.343 kb on - strand at 5239.453 kb on + strand, within ABID97_RS25285 at 5239.453 kb on + strand, within ABID97_RS25285 at 5239.453 kb on + strand, within ABID97_RS25285 at 5239.454 kb on - strand, within ABID97_RS25285 at 5239.454 kb on - strand, within ABID97_RS25285 at 5239.454 kb on - strand, within ABID97_RS25285 at 5239.454 kb on - strand, within ABID97_RS25285 at 5239.454 kb on - strand, within ABID97_RS25285 at 5239.454 kb on - strand, within ABID97_RS25285 at 5239.454 kb on - strand, within ABID97_RS25285 at 5239.454 kb on - strand, within ABID97_RS25285 at 5239.454 kb on - strand, within ABID97_RS25285 at 5239.454 kb on - strand, within ABID97_RS25285 at 5239.660 kb on + strand, within ABID97_RS25285 at 5239.660 kb on + strand, within ABID97_RS25285 at 5239.756 kb on + strand, within ABID97_RS25285 at 5239.756 kb on + strand, within ABID97_RS25285 at 5239.757 kb on - strand, within ABID97_RS25285 at 5239.757 kb on - strand, within ABID97_RS25285 at 5239.927 kb on + strand, within ABID97_RS25285 at 5239.927 kb on + strand, within ABID97_RS25285 at 5239.928 kb on - strand, within ABID97_RS25285 at 5240.248 kb on + strand, within ABID97_RS25285 at 5240.249 kb on - strand, within ABID97_RS25285
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 5,237,936 - ABID97_RS25275 0.31 -0.1 5,237,944 + ABID97_RS25275 0.32 -0.0 5,237,945 - ABID97_RS25275 0.32 -0.5 5,237,945 - ABID97_RS25275 0.32 +0.4 5,238,277 + ABID97_RS25275 0.73 -0.3 5,238,277 + ABID97_RS25275 0.73 +0.6 5,238,278 - ABID97_RS25275 0.73 -0.1 5,238,338 + ABID97_RS25275 0.80 +1.1 5,238,461 + +0.7 5,238,461 + +0.1 5,238,462 - +0.4 5,238,462 - -0.7 5,238,462 - -0.3 5,238,499 + -0.5 5,238,747 + ABID97_RS25280 0.29 -0.1 5,238,747 + ABID97_RS25280 0.29 +0.5 5,238,747 + ABID97_RS25280 0.29 -0.3 5,238,748 - ABID97_RS25280 0.29 -0.1 5,238,748 - ABID97_RS25280 0.29 +0.3 5,238,748 - ABID97_RS25280 0.29 -0.6 5,239,101 + ABID97_RS25280 0.72 -0.0 5,239,102 - ABID97_RS25280 0.72 +0.3 5,239,116 + ABID97_RS25280 0.74 +1.1 5,239,116 + ABID97_RS25280 0.74 +0.1 5,239,116 + ABID97_RS25280 0.74 +0.6 5,239,116 + ABID97_RS25280 0.74 +0.2 5,239,117 - ABID97_RS25280 0.74 +0.0 5,239,117 - ABID97_RS25280 0.74 -0.2 5,239,117 - ABID97_RS25280 0.74 +0.4 5,239,117 - ABID97_RS25280 0.74 -0.4 5,239,297 - -1.4 5,239,342 + +0.1 5,239,342 + +0.2 5,239,343 - -0.4 5,239,343 - +0.5 5,239,343 - +1.1 5,239,453 + ABID97_RS25285 0.11 -0.3 5,239,453 + ABID97_RS25285 0.11 +0.5 5,239,453 + ABID97_RS25285 0.11 -0.3 5,239,454 - ABID97_RS25285 0.11 +0.2 5,239,454 - ABID97_RS25285 0.11 -0.2 5,239,454 - ABID97_RS25285 0.11 +0.3 5,239,454 - ABID97_RS25285 0.11 -0.0 5,239,454 - ABID97_RS25285 0.11 +1.1 5,239,454 - ABID97_RS25285 0.11 -0.0 5,239,454 - ABID97_RS25285 0.11 +0.5 5,239,454 - ABID97_RS25285 0.11 -0.2 5,239,454 - ABID97_RS25285 0.11 +0.2 5,239,454 - ABID97_RS25285 0.11 +0.1 5,239,660 + ABID97_RS25285 0.30 +0.7 5,239,660 + ABID97_RS25285 0.30 -0.1 5,239,756 + ABID97_RS25285 0.39 +0.7 5,239,756 + ABID97_RS25285 0.39 +0.0 5,239,757 - ABID97_RS25285 0.39 -0.8 5,239,757 - ABID97_RS25285 0.39 +0.2 5,239,927 + ABID97_RS25285 0.55 -0.1 5,239,927 + ABID97_RS25285 0.55 +0.2 5,239,928 - ABID97_RS25285 0.55 -0.0 5,240,248 + ABID97_RS25285 0.85 -0.2 5,240,249 - ABID97_RS25285 0.85 +3.6
Or see this region's nucleotide sequence