Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12605

Experiment: a-Ketoglutaric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS12595 and ABID97_RS12600 are separated by 94 nucleotidesABID97_RS12600 and ABID97_RS12605 are separated by 299 nucleotidesABID97_RS12605 and ABID97_RS12610 are separated by 133 nucleotidesABID97_RS12610 and ABID97_RS12615 overlap by 22 nucleotides ABID97_RS12595: ABID97_RS12595 - formaldehyde-activating enzyme, at 2,615,132 to 2,615,644 _RS12595 ABID97_RS12600: ABID97_RS12600 - dihydroneopterin aldolase, at 2,615,739 to 2,616,170 _RS12600 ABID97_RS12605: ABID97_RS12605 - sigma-54-dependent Fis family transcriptional regulator, at 2,616,470 to 2,618,515 _RS12605 ABID97_RS12610: ABID97_RS12610 - flavoprotein, at 2,618,649 to 2,619,194 _RS12610 ABID97_RS12615: ABID97_RS12615 - DUF6513 domain-containing protein, at 2,619,173 to 2,620,657 _RS12615 Position (kb) 2616 2617 2618 2619Strain fitness (log2 ratio) -1 0 1at 2616.447 kb on - strandat 2616.713 kb on + strand, within ABID97_RS12605at 2618.850 kb on + strand, within ABID97_RS12610

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
remove
2,616,447 - -0.6
2,616,713 + ABID97_RS12605 0.12 -0.4
2,618,850 + ABID97_RS12610 0.37 +0.1

Or see this region's nucleotide sequence