Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02980 and ABID97_RS02985 are separated by 181 nucleotides ABID97_RS02985 and ABID97_RS02990 are separated by 208 nucleotides
ABID97_RS02980: ABID97_RS02980 - CysB family HTH-type transcriptional regulator, at 604,736 to 605,680
_RS02980
ABID97_RS02985: ABID97_RS02985 - TetR family transcriptional regulator C-terminal domain-containing protein, at 605,862 to 606,464
_RS02985
ABID97_RS02990: ABID97_RS02990 - alpha/beta fold hydrolase, at 606,673 to 607,593
_RS02990
Position (kb) 605
606
607 Strain fitness (log2 ratio) -2
-1
0
1
2 at 604.941 kb on + strand, within ABID97_RS02980 at 604.941 kb on + strand, within ABID97_RS02980 at 604.986 kb on + strand, within ABID97_RS02980 at 604.986 kb on + strand, within ABID97_RS02980 at 604.986 kb on + strand, within ABID97_RS02980 at 604.986 kb on + strand, within ABID97_RS02980 at 604.987 kb on - strand, within ABID97_RS02980 at 604.987 kb on - strand, within ABID97_RS02980 at 604.987 kb on - strand, within ABID97_RS02980 at 604.987 kb on - strand, within ABID97_RS02980 at 604.987 kb on - strand, within ABID97_RS02980 at 604.987 kb on - strand, within ABID97_RS02980 at 605.094 kb on + strand, within ABID97_RS02980 at 605.094 kb on + strand, within ABID97_RS02980 at 605.095 kb on - strand, within ABID97_RS02980 at 605.746 kb on - strand at 606.054 kb on + strand, within ABID97_RS02985 at 606.055 kb on - strand, within ABID97_RS02985 at 606.055 kb on - strand, within ABID97_RS02985 at 606.186 kb on + strand, within ABID97_RS02985 at 606.186 kb on + strand, within ABID97_RS02985 at 606.186 kb on + strand, within ABID97_RS02985 at 606.186 kb on + strand, within ABID97_RS02985 at 606.186 kb on + strand, within ABID97_RS02985 at 606.186 kb on + strand, within ABID97_RS02985 at 606.186 kb on + strand, within ABID97_RS02985 at 606.187 kb on - strand, within ABID97_RS02985 at 606.187 kb on - strand, within ABID97_RS02985 at 606.187 kb on - strand, within ABID97_RS02985 at 606.453 kb on + strand at 606.573 kb on + strand at 606.724 kb on + strand at 606.724 kb on + strand at 606.724 kb on + strand at 606.724 kb on + strand at 606.724 kb on + strand at 606.724 kb on + strand at 606.725 kb on - strand at 606.725 kb on - strand at 606.725 kb on - strand at 606.725 kb on - strand at 606.725 kb on - strand at 606.725 kb on - strand at 606.727 kb on + strand at 606.925 kb on + strand, within ABID97_RS02990 at 606.926 kb on - strand, within ABID97_RS02990 at 606.926 kb on - strand, within ABID97_RS02990 at 607.132 kb on + strand, within ABID97_RS02990 at 607.132 kb on + strand, within ABID97_RS02990 at 607.132 kb on + strand, within ABID97_RS02990 at 607.132 kb on + strand, within ABID97_RS02990 at 607.132 kb on + strand, within ABID97_RS02990 at 607.133 kb on - strand, within ABID97_RS02990 at 607.133 kb on - strand, within ABID97_RS02990
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 604,941 + ABID97_RS02980 0.22 -0.6 604,941 + ABID97_RS02980 0.22 -2.4 604,986 + ABID97_RS02980 0.26 -0.3 604,986 + ABID97_RS02980 0.26 -1.6 604,986 + ABID97_RS02980 0.26 -0.1 604,986 + ABID97_RS02980 0.26 -0.1 604,987 - ABID97_RS02980 0.27 -0.2 604,987 - ABID97_RS02980 0.27 -0.3 604,987 - ABID97_RS02980 0.27 -0.1 604,987 - ABID97_RS02980 0.27 -0.5 604,987 - ABID97_RS02980 0.27 +0.2 604,987 - ABID97_RS02980 0.27 +1.0 605,094 + ABID97_RS02980 0.38 +0.1 605,094 + ABID97_RS02980 0.38 -0.6 605,095 - ABID97_RS02980 0.38 +0.1 605,746 - -0.1 606,054 + ABID97_RS02985 0.32 -2.0 606,055 - ABID97_RS02985 0.32 +0.5 606,055 - ABID97_RS02985 0.32 -0.2 606,186 + ABID97_RS02985 0.54 -2.0 606,186 + ABID97_RS02985 0.54 -1.2 606,186 + ABID97_RS02985 0.54 -1.9 606,186 + ABID97_RS02985 0.54 -1.6 606,186 + ABID97_RS02985 0.54 -0.6 606,186 + ABID97_RS02985 0.54 -1.6 606,186 + ABID97_RS02985 0.54 -1.5 606,187 - ABID97_RS02985 0.54 -0.2 606,187 - ABID97_RS02985 0.54 -1.5 606,187 - ABID97_RS02985 0.54 -0.6 606,453 + -0.5 606,573 + +0.6 606,724 + +0.2 606,724 + -0.3 606,724 + +0.0 606,724 + -0.5 606,724 + -0.2 606,724 + -0.0 606,725 - +0.3 606,725 - +0.1 606,725 - +0.1 606,725 - +0.6 606,725 - +0.2 606,725 - +1.9 606,727 + +0.6 606,925 + ABID97_RS02990 0.27 +1.8 606,926 - ABID97_RS02990 0.27 -0.4 606,926 - ABID97_RS02990 0.27 -0.4 607,132 + ABID97_RS02990 0.50 +0.7 607,132 + ABID97_RS02990 0.50 -0.3 607,132 + ABID97_RS02990 0.50 -0.7 607,132 + ABID97_RS02990 0.50 +0.2 607,132 + ABID97_RS02990 0.50 +0.9 607,133 - ABID97_RS02990 0.50 -0.4 607,133 - ABID97_RS02990 0.50 -0.2
Or see this region's nucleotide sequence