Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02635

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02630 and ABID97_RS02635 are separated by 87 nucleotidesABID97_RS02635 and ABID97_RS02640 are separated by 50 nucleotidesABID97_RS02640 and ABID97_RS02645 are separated by 94 nucleotides ABID97_RS02630: ABID97_RS02630 - KpsF/GutQ family sugar-phosphate isomerase, at 536,334 to 537,332 _RS02630 ABID97_RS02635: ABID97_RS02635 - monovalent cation:proton antiporter-2 (CPA2) family protein, at 537,420 to 539,405 _RS02635 ABID97_RS02640: ABID97_RS02640 - hypothetical protein, at 539,456 to 540,028 _RS02640 ABID97_RS02645: ABID97_RS02645 - hypothetical protein, at 540,123 to 540,497 _RS02645 Position (kb) 537 538 539 540Strain fitness (log2 ratio) -2 -1 0 1 2 3at 537.344 kb on - strandat 537.344 kb on - strandat 537.408 kb on + strandat 537.409 kb on - strandat 537.409 kb on - strandat 537.409 kb on - strandat 537.409 kb on - strandat 537.409 kb on - strandat 537.409 kb on - strandat 537.447 kb on + strandat 537.447 kb on + strandat 537.447 kb on + strandat 537.447 kb on + strandat 537.447 kb on + strandat 537.447 kb on + strandat 537.447 kb on + strandat 537.447 kb on + strandat 537.448 kb on - strandat 537.448 kb on - strandat 537.448 kb on - strandat 537.448 kb on - strandat 537.448 kb on - strandat 537.513 kb on + strandat 537.513 kb on + strandat 537.577 kb on + strandat 537.578 kb on - strandat 537.578 kb on - strandat 538.023 kb on + strand, within ABID97_RS02635at 538.024 kb on - strand, within ABID97_RS02635at 538.203 kb on + strand, within ABID97_RS02635at 538.203 kb on + strand, within ABID97_RS02635at 538.203 kb on + strand, within ABID97_RS02635at 538.203 kb on + strand, within ABID97_RS02635at 538.203 kb on + strand, within ABID97_RS02635at 538.204 kb on - strand, within ABID97_RS02635at 538.204 kb on - strand, within ABID97_RS02635at 538.204 kb on - strand, within ABID97_RS02635at 538.204 kb on - strand, within ABID97_RS02635at 538.204 kb on - strand, within ABID97_RS02635at 538.204 kb on - strand, within ABID97_RS02635at 538.425 kb on + strand, within ABID97_RS02635at 538.426 kb on - strand, within ABID97_RS02635at 538.563 kb on + strand, within ABID97_RS02635at 538.563 kb on + strand, within ABID97_RS02635at 538.563 kb on + strand, within ABID97_RS02635at 538.563 kb on + strand, within ABID97_RS02635at 538.563 kb on + strand, within ABID97_RS02635at 538.563 kb on + strand, within ABID97_RS02635at 538.563 kb on + strand, within ABID97_RS02635at 538.563 kb on + strand, within ABID97_RS02635at 538.564 kb on - strand, within ABID97_RS02635at 538.564 kb on - strand, within ABID97_RS02635at 538.564 kb on - strand, within ABID97_RS02635at 538.564 kb on - strand, within ABID97_RS02635at 538.564 kb on - strand, within ABID97_RS02635at 538.564 kb on - strand, within ABID97_RS02635at 538.564 kb on - strand, within ABID97_RS02635at 538.564 kb on - strand, within ABID97_RS02635at 538.564 kb on - strand, within ABID97_RS02635at 538.564 kb on - strand, within ABID97_RS02635at 538.564 kb on - strand, within ABID97_RS02635at 538.564 kb on - strand, within ABID97_RS02635at 538.564 kb on - strand, within ABID97_RS02635at 538.734 kb on + strand, within ABID97_RS02635at 538.734 kb on + strand, within ABID97_RS02635at 538.734 kb on + strand, within ABID97_RS02635at 538.734 kb on + strand, within ABID97_RS02635at 538.734 kb on + strand, within ABID97_RS02635at 538.734 kb on + strand, within ABID97_RS02635at 538.734 kb on + strand, within ABID97_RS02635at 538.734 kb on + strand, within ABID97_RS02635at 538.734 kb on + strand, within ABID97_RS02635at 538.734 kb on + strand, within ABID97_RS02635at 538.734 kb on + strand, within ABID97_RS02635at 538.735 kb on - strand, within ABID97_RS02635at 538.735 kb on - strand, within ABID97_RS02635at 538.735 kb on - strand, within ABID97_RS02635at 538.735 kb on - strand, within ABID97_RS02635at 538.735 kb on - strand, within ABID97_RS02635at 538.872 kb on + strand, within ABID97_RS02635at 538.872 kb on + strand, within ABID97_RS02635at 538.872 kb on + strand, within ABID97_RS02635at 538.872 kb on + strand, within ABID97_RS02635at 538.872 kb on + strand, within ABID97_RS02635at 538.873 kb on - strand, within ABID97_RS02635at 538.873 kb on - strand, within ABID97_RS02635at 538.873 kb on - strand, within ABID97_RS02635at 539.115 kb on + strand, within ABID97_RS02635at 539.115 kb on + strand, within ABID97_RS02635at 539.115 kb on + strand, within ABID97_RS02635at 539.115 kb on + strand, within ABID97_RS02635at 539.115 kb on + strand, within ABID97_RS02635at 539.116 kb on - strand, within ABID97_RS02635at 539.318 kb on + strandat 539.318 kb on + strandat 539.319 kb on - strandat 539.403 kb on + strandat 539.403 kb on + strandat 539.403 kb on + strandat 539.538 kb on + strand, within ABID97_RS02640at 539.538 kb on + strand, within ABID97_RS02640at 539.538 kb on + strand, within ABID97_RS02640at 539.538 kb on + strand, within ABID97_RS02640at 539.538 kb on + strand, within ABID97_RS02640at 539.931 kb on + strand, within ABID97_RS02640at 539.932 kb on - strand, within ABID97_RS02640at 540.402 kb on + strand, within ABID97_RS02645at 540.402 kb on + strand, within ABID97_RS02645at 540.402 kb on + strand, within ABID97_RS02645at 540.403 kb on - strand, within ABID97_RS02645at 540.403 kb on - strand, within ABID97_RS02645at 540.403 kb on - strand, within ABID97_RS02645

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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537,344 - -0.7
537,344 - -0.3
537,408 + +0.6
537,409 - -0.5
537,409 - -1.1
537,409 - +0.6
537,409 - -1.9
537,409 - -0.0
537,409 - -0.5
537,447 + +1.0
537,447 + +1.1
537,447 + +1.5
537,447 + +1.4
537,447 + +1.0
537,447 + +0.9
537,447 + +1.0
537,447 + +0.9
537,448 - +1.2
537,448 - +1.7
537,448 - +1.0
537,448 - +1.5
537,448 - +1.2
537,513 + +1.7
537,513 + +1.1
537,577 + +1.1
537,578 - +1.2
537,578 - +0.9
538,023 + ABID97_RS02635 0.30 +2.2
538,024 - ABID97_RS02635 0.30 +1.3
538,203 + ABID97_RS02635 0.39 +1.2
538,203 + ABID97_RS02635 0.39 +1.5
538,203 + ABID97_RS02635 0.39 +1.0
538,203 + ABID97_RS02635 0.39 +1.2
538,203 + ABID97_RS02635 0.39 +0.9
538,204 - ABID97_RS02635 0.39 +1.4
538,204 - ABID97_RS02635 0.39 +1.0
538,204 - ABID97_RS02635 0.39 +1.5
538,204 - ABID97_RS02635 0.39 +1.3
538,204 - ABID97_RS02635 0.39 +0.7
538,204 - ABID97_RS02635 0.39 +1.3
538,425 + ABID97_RS02635 0.51 +1.2
538,426 - ABID97_RS02635 0.51 +1.3
538,563 + ABID97_RS02635 0.58 +1.1
538,563 + ABID97_RS02635 0.58 +1.6
538,563 + ABID97_RS02635 0.58 +1.4
538,563 + ABID97_RS02635 0.58 +1.4
538,563 + ABID97_RS02635 0.58 +1.1
538,563 + ABID97_RS02635 0.58 +1.1
538,563 + ABID97_RS02635 0.58 +1.3
538,563 + ABID97_RS02635 0.58 +1.4
538,564 - ABID97_RS02635 0.58 +1.1
538,564 - ABID97_RS02635 0.58 +1.5
538,564 - ABID97_RS02635 0.58 +1.3
538,564 - ABID97_RS02635 0.58 +1.3
538,564 - ABID97_RS02635 0.58 +1.4
538,564 - ABID97_RS02635 0.58 +1.4
538,564 - ABID97_RS02635 0.58 +1.2
538,564 - ABID97_RS02635 0.58 +0.9
538,564 - ABID97_RS02635 0.58 +1.2
538,564 - ABID97_RS02635 0.58 +0.6
538,564 - ABID97_RS02635 0.58 +1.0
538,564 - ABID97_RS02635 0.58 +1.1
538,564 - ABID97_RS02635 0.58 +1.2
538,734 + ABID97_RS02635 0.66 +1.2
538,734 + ABID97_RS02635 0.66 +1.2
538,734 + ABID97_RS02635 0.66 +1.6
538,734 + ABID97_RS02635 0.66 +1.3
538,734 + ABID97_RS02635 0.66 +0.5
538,734 + ABID97_RS02635 0.66 +0.7
538,734 + ABID97_RS02635 0.66 +0.7
538,734 + ABID97_RS02635 0.66 +1.7
538,734 + ABID97_RS02635 0.66 +1.3
538,734 + ABID97_RS02635 0.66 +0.2
538,734 + ABID97_RS02635 0.66 +1.5
538,735 - ABID97_RS02635 0.66 +1.1
538,735 - ABID97_RS02635 0.66 +0.6
538,735 - ABID97_RS02635 0.66 +2.9
538,735 - ABID97_RS02635 0.66 +1.3
538,735 - ABID97_RS02635 0.66 +1.1
538,872 + ABID97_RS02635 0.73 +1.8
538,872 + ABID97_RS02635 0.73 +1.1
538,872 + ABID97_RS02635 0.73 +1.2
538,872 + ABID97_RS02635 0.73 +0.6
538,872 + ABID97_RS02635 0.73 +1.2
538,873 - ABID97_RS02635 0.73 +0.8
538,873 - ABID97_RS02635 0.73 +0.9
538,873 - ABID97_RS02635 0.73 +1.2
539,115 + ABID97_RS02635 0.85 +1.2
539,115 + ABID97_RS02635 0.85 +1.1
539,115 + ABID97_RS02635 0.85 +3.2
539,115 + ABID97_RS02635 0.85 +0.9
539,115 + ABID97_RS02635 0.85 +1.0
539,116 - ABID97_RS02635 0.85 +1.2
539,318 + +1.6
539,318 + +1.6
539,319 - +1.4
539,403 + +0.4
539,403 + +1.2
539,403 + +0.1
539,538 + ABID97_RS02640 0.14 +0.2
539,538 + ABID97_RS02640 0.14 -0.5
539,538 + ABID97_RS02640 0.14 +0.3
539,538 + ABID97_RS02640 0.14 +0.2
539,538 + ABID97_RS02640 0.14 -0.4
539,931 + ABID97_RS02640 0.83 +0.1
539,932 - ABID97_RS02640 0.83 +0.1
540,402 + ABID97_RS02645 0.74 +1.2
540,402 + ABID97_RS02645 0.74 +0.2
540,402 + ABID97_RS02645 0.74 +0.8
540,403 - ABID97_RS02645 0.75 -0.6
540,403 - ABID97_RS02645 0.75 +0.6
540,403 - ABID97_RS02645 0.75 +0.5

Or see this region's nucleotide sequence