Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01935 and ABID97_RS01940 are separated by 3 nucleotides ABID97_RS01940 and ABID97_RS01945 are separated by 20 nucleotides ABID97_RS01945 and ABID97_RS01950 overlap by 8 nucleotides
ABID97_RS01935: ABID97_RS01935 - 3-oxo-tetronate kinase, at 382,221 to 383,492
_RS01935
ABID97_RS01940: ABID97_RS01940 - D-erythronate dehydrogenase, at 383,496 to 384,512
_RS01940
ABID97_RS01945: ABID97_RS01945 - L-threonate dehydrogenase, at 384,533 to 385,477
_RS01945
ABID97_RS01950: ABID97_RS01950 - MFS transporter, at 385,470 to 386,756
_RS01950
Position (kb) 383
384
385 Strain fitness (log2 ratio) -1
0
1
2 at 382.558 kb on + strand, within ABID97_RS01935 at 382.559 kb on - strand, within ABID97_RS01935 at 383.104 kb on + strand, within ABID97_RS01935 at 383.248 kb on + strand, within ABID97_RS01935 at 383.248 kb on + strand, within ABID97_RS01935 at 383.248 kb on + strand, within ABID97_RS01935 at 383.248 kb on + strand, within ABID97_RS01935 at 383.248 kb on + strand, within ABID97_RS01935 at 383.248 kb on + strand, within ABID97_RS01935 at 383.248 kb on + strand, within ABID97_RS01935 at 383.249 kb on - strand, within ABID97_RS01935 at 383.249 kb on - strand, within ABID97_RS01935 at 384.046 kb on + strand, within ABID97_RS01940 at 384.047 kb on - strand, within ABID97_RS01940 at 384.047 kb on - strand, within ABID97_RS01940 at 384.282 kb on - strand, within ABID97_RS01940 at 384.819 kb on + strand, within ABID97_RS01945 at 384.819 kb on + strand, within ABID97_RS01945 at 384.820 kb on - strand, within ABID97_RS01945 at 384.820 kb on - strand, within ABID97_RS01945 at 384.820 kb on - strand, within ABID97_RS01945 at 385.084 kb on - strand, within ABID97_RS01945 at 385.438 kb on + strand at 385.439 kb on - strand at 385.439 kb on - strand at 385.439 kb on - strand at 385.439 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 382,558 + ABID97_RS01935 0.26 -0.6 382,559 - ABID97_RS01935 0.27 -0.5 383,104 + ABID97_RS01935 0.69 +0.0 383,248 + ABID97_RS01935 0.81 +0.1 383,248 + ABID97_RS01935 0.81 -0.0 383,248 + ABID97_RS01935 0.81 -0.2 383,248 + ABID97_RS01935 0.81 -0.7 383,248 + ABID97_RS01935 0.81 +0.1 383,248 + ABID97_RS01935 0.81 -0.1 383,248 + ABID97_RS01935 0.81 -0.1 383,249 - ABID97_RS01935 0.81 -1.1 383,249 - ABID97_RS01935 0.81 -0.4 384,046 + ABID97_RS01940 0.54 +0.6 384,047 - ABID97_RS01940 0.54 -0.3 384,047 - ABID97_RS01940 0.54 -1.3 384,282 - ABID97_RS01940 0.77 +1.0 384,819 + ABID97_RS01945 0.30 -0.3 384,819 + ABID97_RS01945 0.30 +0.6 384,820 - ABID97_RS01945 0.30 -0.5 384,820 - ABID97_RS01945 0.30 +0.1 384,820 - ABID97_RS01945 0.30 -1.5 385,084 - ABID97_RS01945 0.58 +2.5 385,438 + +0.1 385,439 - -0.4 385,439 - +0.7 385,439 - -0.1 385,439 - -0.1
Or see this region's nucleotide sequence