Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01075 and ABID97_RS01080 overlap by 4 nucleotides ABID97_RS01080 and ABID97_RS01085 are separated by 164 nucleotides ABID97_RS01085 and ABID97_RS01090 are separated by 3 nucleotides
ABID97_RS01075: ABID97_RS01075 - AMP-binding protein, at 216,084 to 218,039
_RS01075
ABID97_RS01080: ABID97_RS01080 - ABC transporter ATP-binding protein, at 218,036 to 218,821
_RS01080
ABID97_RS01085: ABID97_RS01085 - branched-chain amino acid ABC transporter permease, at 218,986 to 219,915
_RS01085
ABID97_RS01090: ABID97_RS01090 - branched-chain amino acid ABC transporter permease, at 219,919 to 220,983
_RS01090
Position (kb) 218
219
220 Strain fitness (log2 ratio) -1
0
1 at 218.214 kb on - strand, within ABID97_RS01080 at 218.735 kb on + strand, within ABID97_RS01080 at 218.801 kb on + strand at 219.037 kb on + strand at 219.071 kb on - strand at 219.323 kb on - strand, within ABID97_RS01085 at 219.841 kb on + strand at 219.842 kb on - strand at 219.926 kb on - strand at 219.955 kb on + strand at 220.462 kb on + strand, within ABID97_RS01090 at 220.463 kb on - strand, within ABID97_RS01090 at 220.598 kb on - strand, within ABID97_RS01090
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 218,214 - ABID97_RS01080 0.23 -0.3 218,735 + ABID97_RS01080 0.89 -0.8 218,801 + -0.1 219,037 + +0.1 219,071 - +1.5 219,323 - ABID97_RS01085 0.36 +0.8 219,841 + -0.0 219,842 - +0.2 219,926 - -0.6 219,955 + +0.4 220,462 + ABID97_RS01090 0.51 -0.2 220,463 - ABID97_RS01090 0.51 -0.3 220,598 - ABID97_RS01090 0.64 -0.5
Or see this region's nucleotide sequence