Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01000 and ABID97_RS01005 are separated by 171 nucleotides ABID97_RS01005 and ABID97_RS01010 are separated by 4 nucleotides ABID97_RS01010 and ABID97_RS01015 are separated by 13 nucleotides ABID97_RS01015 and ABID97_RS01020 are separated by 13 nucleotides
ABID97_RS01000: ABID97_RS01000 - zinc-binding dehydrogenase, at 201,164 to 202,294
_RS01000
ABID97_RS01005: ABID97_RS01005 - two-component system response regulator KdpE, at 202,466 to 203,158
_RS01005
ABID97_RS01010: ABID97_RS01010 - DUF4118 domain-containing protein, at 203,163 to 205,907
_RS01010
ABID97_RS01015: ABID97_RS01015 - potassium-transporting ATPase subunit KdpC, at 205,921 to 206,502
_RS01015
ABID97_RS01020: ABID97_RS01020 - potassium-transporting ATPase subunit KdpB, at 206,516 to 208,606
_RS01020
Position (kb) 203
204
205
206 Strain fitness (log2 ratio) -1
0
1 at 202.233 kb on - strand at 202.233 kb on - strand at 202.233 kb on - strand at 202.233 kb on - strand at 202.233 kb on - strand at 202.467 kb on + strand at 202.560 kb on + strand, within ABID97_RS01005 at 202.560 kb on + strand, within ABID97_RS01005 at 202.561 kb on - strand, within ABID97_RS01005 at 202.561 kb on - strand, within ABID97_RS01005 at 202.561 kb on - strand, within ABID97_RS01005 at 202.561 kb on - strand, within ABID97_RS01005 at 203.471 kb on - strand, within ABID97_RS01010 at 203.911 kb on + strand, within ABID97_RS01010 at 203.912 kb on - strand, within ABID97_RS01010 at 203.912 kb on - strand, within ABID97_RS01010 at 204.056 kb on - strand, within ABID97_RS01010 at 204.056 kb on - strand, within ABID97_RS01010 at 204.416 kb on - strand, within ABID97_RS01010 at 204.416 kb on - strand, within ABID97_RS01010 at 205.021 kb on + strand, within ABID97_RS01010 at 205.021 kb on + strand, within ABID97_RS01010 at 205.022 kb on - strand, within ABID97_RS01010 at 205.312 kb on + strand, within ABID97_RS01010 at 206.271 kb on - strand, within ABID97_RS01015 at 206.595 kb on + strand at 206.596 kb on - strand at 206.596 kb on - strand at 206.805 kb on + strand, within ABID97_RS01020 at 206.806 kb on - strand, within ABID97_RS01020
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 202,233 - -0.2 202,233 - -0.1 202,233 - -0.1 202,233 - +0.0 202,233 - -0.1 202,467 + -0.1 202,560 + ABID97_RS01005 0.14 +0.5 202,560 + ABID97_RS01005 0.14 +0.0 202,561 - ABID97_RS01005 0.14 -0.0 202,561 - ABID97_RS01005 0.14 -0.2 202,561 - ABID97_RS01005 0.14 +1.3 202,561 - ABID97_RS01005 0.14 -0.0 203,471 - ABID97_RS01010 0.11 -0.0 203,911 + ABID97_RS01010 0.27 +1.2 203,912 - ABID97_RS01010 0.27 -1.1 203,912 - ABID97_RS01010 0.27 +0.1 204,056 - ABID97_RS01010 0.33 +0.3 204,056 - ABID97_RS01010 0.33 +0.8 204,416 - ABID97_RS01010 0.46 +0.2 204,416 - ABID97_RS01010 0.46 +0.6 205,021 + ABID97_RS01010 0.68 +0.0 205,021 + ABID97_RS01010 0.68 +0.0 205,022 - ABID97_RS01010 0.68 +1.0 205,312 + ABID97_RS01010 0.78 -0.1 206,271 - ABID97_RS01015 0.60 +0.4 206,595 + -0.8 206,596 - +0.4 206,596 - -0.4 206,805 + ABID97_RS01020 0.14 -0.7 206,806 - ABID97_RS01020 0.14 +0.1
Or see this region's nucleotide sequence