Experiment: Cytidine carbon 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04555 and PFR28_04556 overlap by 1 nucleotides PFR28_04556 and PFR28_04557 overlap by 1 nucleotides PFR28_04557 and PFR28_04558 overlap by 4 nucleotides
PFR28_04555: PFR28_04555 - Alginate biosynthesis protein AlgA, at 5,202,838 to 5,204,280
_04555
PFR28_04556: PFR28_04556 - hypothetical protein, at 5,204,280 to 5,205,077
_04556
PFR28_04557: PFR28_04557 - Vitamin B12 import ATP-binding protein BtuD, at 5,205,077 to 5,206,342
_04557
PFR28_04558: PFR28_04558 - hypothetical protein, at 5,206,339 to 5,207,700
_04558
Position (kb) 5205
5206
5207 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5204.224 kb on + strand at 5204.225 kb on - strand at 5204.264 kb on - strand at 5204.264 kb on - strand at 5204.424 kb on + strand, within PFR28_04556 at 5204.424 kb on + strand, within PFR28_04556 at 5204.424 kb on + strand, within PFR28_04556 at 5204.424 kb on + strand, within PFR28_04556 at 5204.425 kb on - strand, within PFR28_04556 at 5204.425 kb on - strand, within PFR28_04556 at 5204.425 kb on - strand, within PFR28_04556 at 5204.487 kb on + strand, within PFR28_04556 at 5204.487 kb on + strand, within PFR28_04556 at 5204.487 kb on + strand, within PFR28_04556 at 5204.487 kb on + strand, within PFR28_04556 at 5204.487 kb on + strand, within PFR28_04556 at 5204.487 kb on + strand, within PFR28_04556 at 5204.497 kb on - strand, within PFR28_04556 at 5204.497 kb on - strand, within PFR28_04556 at 5204.752 kb on + strand, within PFR28_04556 at 5204.958 kb on + strand, within PFR28_04556 at 5204.959 kb on - strand, within PFR28_04556 at 5204.959 kb on - strand, within PFR28_04556 at 5204.959 kb on - strand, within PFR28_04556 at 5205.083 kb on + strand at 5205.083 kb on + strand at 5205.113 kb on + strand at 5205.113 kb on + strand at 5205.114 kb on - strand at 5205.114 kb on - strand at 5205.114 kb on - strand at 5205.512 kb on + strand, within PFR28_04557 at 5205.513 kb on - strand, within PFR28_04557 at 5205.611 kb on + strand, within PFR28_04557 at 5205.611 kb on + strand, within PFR28_04557 at 5205.611 kb on + strand, within PFR28_04557 at 5205.612 kb on - strand, within PFR28_04557 at 5205.779 kb on + strand, within PFR28_04557 at 5205.780 kb on - strand, within PFR28_04557 at 5205.780 kb on - strand, within PFR28_04557 at 5205.780 kb on - strand, within PFR28_04557 at 5205.782 kb on + strand, within PFR28_04557 at 5205.782 kb on + strand, within PFR28_04557 at 5205.782 kb on + strand, within PFR28_04557 at 5205.782 kb on + strand, within PFR28_04557 at 5205.782 kb on + strand, within PFR28_04557 at 5205.783 kb on - strand, within PFR28_04557 at 5205.783 kb on - strand, within PFR28_04557 at 5205.783 kb on - strand, within PFR28_04557 at 5205.783 kb on - strand, within PFR28_04557 at 5205.783 kb on - strand, within PFR28_04557 at 5205.783 kb on - strand, within PFR28_04557 at 5205.783 kb on - strand, within PFR28_04557 at 5205.853 kb on + strand, within PFR28_04557 at 5205.854 kb on - strand, within PFR28_04557 at 5205.854 kb on - strand, within PFR28_04557 at 5206.037 kb on + strand, within PFR28_04557 at 5206.037 kb on + strand, within PFR28_04557 at 5206.037 kb on + strand, within PFR28_04557 at 5206.037 kb on + strand, within PFR28_04557 at 5206.037 kb on + strand, within PFR28_04557 at 5206.037 kb on + strand, within PFR28_04557 at 5206.037 kb on + strand, within PFR28_04557 at 5206.037 kb on + strand, within PFR28_04557 at 5206.037 kb on + strand, within PFR28_04557 at 5206.038 kb on - strand, within PFR28_04557 at 5206.038 kb on - strand, within PFR28_04557 at 5206.038 kb on - strand, within PFR28_04557 at 5206.038 kb on - strand, within PFR28_04557 at 5206.038 kb on - strand, within PFR28_04557 at 5206.038 kb on - strand, within PFR28_04557 at 5206.038 kb on - strand, within PFR28_04557 at 5206.048 kb on + strand, within PFR28_04557 at 5206.048 kb on + strand, within PFR28_04557 at 5206.049 kb on - strand, within PFR28_04557 at 5206.142 kb on + strand, within PFR28_04557 at 5206.142 kb on + strand, within PFR28_04557 at 5206.142 kb on + strand, within PFR28_04557 at 5206.142 kb on + strand, within PFR28_04557 at 5206.143 kb on - strand, within PFR28_04557 at 5206.143 kb on - strand, within PFR28_04557 at 5206.143 kb on - strand, within PFR28_04557 at 5206.143 kb on - strand, within PFR28_04557 at 5206.366 kb on + strand at 5206.366 kb on + strand at 5206.366 kb on + strand at 5206.366 kb on + strand at 5206.366 kb on + strand at 5206.366 kb on + strand at 5206.366 kb on + strand at 5206.366 kb on + strand at 5206.366 kb on + strand at 5206.366 kb on + strand at 5206.366 kb on + strand at 5206.366 kb on + strand at 5206.366 kb on + strand at 5206.366 kb on + strand at 5206.366 kb on + strand at 5206.366 kb on + strand at 5206.366 kb on + strand at 5206.366 kb on + strand at 5206.366 kb on + strand at 5206.366 kb on + strand at 5206.366 kb on + strand at 5206.366 kb on + strand at 5206.366 kb on + strand at 5206.366 kb on + strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.367 kb on - strand at 5206.372 kb on + strand at 5206.372 kb on + strand at 5206.372 kb on + strand at 5206.372 kb on + strand at 5206.372 kb on + strand at 5206.372 kb on + strand at 5206.372 kb on + strand at 5206.373 kb on - strand at 5206.373 kb on - strand at 5206.373 kb on - strand at 5206.373 kb on - strand at 5206.373 kb on - strand at 5206.412 kb on + strand at 5206.412 kb on + strand at 5206.412 kb on + strand at 5206.412 kb on + strand at 5206.413 kb on - strand at 5206.413 kb on - strand at 5206.413 kb on - strand at 5206.413 kb on - strand at 5206.413 kb on - strand at 5206.416 kb on + strand at 5206.416 kb on + strand at 5206.416 kb on + strand at 5206.416 kb on + strand at 5206.417 kb on - strand at 5206.417 kb on - strand at 5206.417 kb on - strand at 5206.417 kb on - strand at 5206.492 kb on + strand, within PFR28_04558 at 5206.492 kb on + strand, within PFR28_04558 at 5206.492 kb on + strand, within PFR28_04558 at 5206.493 kb on - strand, within PFR28_04558 at 5206.493 kb on - strand, within PFR28_04558 at 5206.493 kb on - strand, within PFR28_04558 at 5206.651 kb on + strand, within PFR28_04558 at 5206.652 kb on - strand, within PFR28_04558 at 5206.725 kb on + strand, within PFR28_04558 at 5206.725 kb on + strand, within PFR28_04558 at 5206.725 kb on + strand, within PFR28_04558 at 5206.725 kb on + strand, within PFR28_04558 at 5206.725 kb on + strand, within PFR28_04558 at 5206.726 kb on - strand, within PFR28_04558 at 5206.726 kb on - strand, within PFR28_04558 at 5206.782 kb on - strand, within PFR28_04558 at 5206.867 kb on + strand, within PFR28_04558 at 5206.867 kb on + strand, within PFR28_04558 at 5206.867 kb on + strand, within PFR28_04558 at 5206.867 kb on + strand, within PFR28_04558 at 5206.867 kb on + strand, within PFR28_04558 at 5206.867 kb on + strand, within PFR28_04558 at 5206.867 kb on + strand, within PFR28_04558 at 5206.867 kb on + strand, within PFR28_04558 at 5206.867 kb on + strand, within PFR28_04558 at 5206.867 kb on + strand, within PFR28_04558 at 5206.867 kb on + strand, within PFR28_04558 at 5206.868 kb on - strand, within PFR28_04558 at 5206.868 kb on - strand, within PFR28_04558 at 5206.868 kb on - strand, within PFR28_04558 at 5206.868 kb on - strand, within PFR28_04558 at 5206.966 kb on + strand, within PFR28_04558 at 5206.966 kb on + strand, within PFR28_04558 at 5206.966 kb on + strand, within PFR28_04558 at 5206.966 kb on + strand, within PFR28_04558 at 5206.967 kb on - strand, within PFR28_04558 at 5206.967 kb on - strand, within PFR28_04558 at 5207.000 kb on + strand, within PFR28_04558 at 5207.001 kb on - strand, within PFR28_04558 at 5207.120 kb on + strand, within PFR28_04558 at 5207.120 kb on + strand, within PFR28_04558 at 5207.120 kb on + strand, within PFR28_04558 at 5207.121 kb on - strand, within PFR28_04558 at 5207.121 kb on - strand, within PFR28_04558 at 5207.194 kb on + strand, within PFR28_04558 at 5207.195 kb on - strand, within PFR28_04558 at 5207.195 kb on - strand, within PFR28_04558
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine carbon 10 mM remove 5,204,224 + +0.2 5,204,225 - +0.7 5,204,264 - -0.7 5,204,264 - -1.0 5,204,424 + PFR28_04556 0.18 -0.8 5,204,424 + PFR28_04556 0.18 -0.7 5,204,424 + PFR28_04556 0.18 +0.4 5,204,424 + PFR28_04556 0.18 -1.6 5,204,425 - PFR28_04556 0.18 +0.6 5,204,425 - PFR28_04556 0.18 -2.4 5,204,425 - PFR28_04556 0.18 +0.3 5,204,487 + PFR28_04556 0.26 +0.6 5,204,487 + PFR28_04556 0.26 +0.5 5,204,487 + PFR28_04556 0.26 -0.3 5,204,487 + PFR28_04556 0.26 +0.0 5,204,487 + PFR28_04556 0.26 +0.5 5,204,487 + PFR28_04556 0.26 -1.1 5,204,497 - PFR28_04556 0.27 -0.3 5,204,497 - PFR28_04556 0.27 -3.1 5,204,752 + PFR28_04556 0.59 +0.8 5,204,958 + PFR28_04556 0.85 +0.0 5,204,959 - PFR28_04556 0.85 -1.5 5,204,959 - PFR28_04556 0.85 -3.1 5,204,959 - PFR28_04556 0.85 +1.8 5,205,083 + +0.3 5,205,083 + -0.6 5,205,113 + -1.5 5,205,113 + -0.4 5,205,114 - +1.0 5,205,114 - +0.5 5,205,114 - -0.1 5,205,512 + PFR28_04557 0.34 +0.3 5,205,513 - PFR28_04557 0.34 -0.7 5,205,611 + PFR28_04557 0.42 -0.2 5,205,611 + PFR28_04557 0.42 +0.9 5,205,611 + PFR28_04557 0.42 -0.8 5,205,612 - PFR28_04557 0.42 -0.6 5,205,779 + PFR28_04557 0.55 -3.1 5,205,780 - PFR28_04557 0.56 -1.1 5,205,780 - PFR28_04557 0.56 -2.1 5,205,780 - PFR28_04557 0.56 -0.1 5,205,782 + PFR28_04557 0.56 -1.9 5,205,782 + PFR28_04557 0.56 -0.1 5,205,782 + PFR28_04557 0.56 -0.9 5,205,782 + PFR28_04557 0.56 -0.7 5,205,782 + PFR28_04557 0.56 -1.3 5,205,783 - PFR28_04557 0.56 +0.6 5,205,783 - PFR28_04557 0.56 -4.1 5,205,783 - PFR28_04557 0.56 +0.7 5,205,783 - PFR28_04557 0.56 -0.5 5,205,783 - PFR28_04557 0.56 +0.1 5,205,783 - PFR28_04557 0.56 -2.8 5,205,783 - PFR28_04557 0.56 +0.2 5,205,853 + PFR28_04557 0.61 -1.8 5,205,854 - PFR28_04557 0.61 -1.2 5,205,854 - PFR28_04557 0.61 +0.1 5,206,037 + PFR28_04557 0.76 -1.0 5,206,037 + PFR28_04557 0.76 +0.0 5,206,037 + PFR28_04557 0.76 -0.4 5,206,037 + PFR28_04557 0.76 +0.4 5,206,037 + PFR28_04557 0.76 -1.5 5,206,037 + PFR28_04557 0.76 +1.8 5,206,037 + PFR28_04557 0.76 -1.4 5,206,037 + PFR28_04557 0.76 -0.7 5,206,037 + PFR28_04557 0.76 -2.1 5,206,038 - PFR28_04557 0.76 -0.6 5,206,038 - PFR28_04557 0.76 -0.5 5,206,038 - PFR28_04557 0.76 -0.8 5,206,038 - PFR28_04557 0.76 +0.3 5,206,038 - PFR28_04557 0.76 -1.3 5,206,038 - PFR28_04557 0.76 -1.6 5,206,038 - PFR28_04557 0.76 -3.5 5,206,048 + PFR28_04557 0.77 -1.0 5,206,048 + PFR28_04557 0.77 +0.6 5,206,049 - PFR28_04557 0.77 -0.4 5,206,142 + PFR28_04557 0.84 -0.6 5,206,142 + PFR28_04557 0.84 +0.2 5,206,142 + PFR28_04557 0.84 -0.4 5,206,142 + PFR28_04557 0.84 -1.3 5,206,143 - PFR28_04557 0.84 +0.2 5,206,143 - PFR28_04557 0.84 +0.7 5,206,143 - PFR28_04557 0.84 -0.4 5,206,143 - PFR28_04557 0.84 +1.6 5,206,366 + -0.6 5,206,366 + -1.3 5,206,366 + +1.7 5,206,366 + -1.9 5,206,366 + +0.1 5,206,366 + -0.3 5,206,366 + +0.0 5,206,366 + -1.2 5,206,366 + +0.1 5,206,366 + -0.6 5,206,366 + -0.0 5,206,366 + -1.8 5,206,366 + +1.0 5,206,366 + -0.0 5,206,366 + -0.4 5,206,366 + -0.8 5,206,366 + +0.7 5,206,366 + +0.4 5,206,366 + -0.6 5,206,366 + +0.6 5,206,366 + -4.3 5,206,366 + +0.5 5,206,366 + -0.4 5,206,366 + -0.2 5,206,367 - -0.5 5,206,367 - -0.3 5,206,367 - -0.0 5,206,367 - -0.9 5,206,367 - -0.1 5,206,367 - -1.7 5,206,367 - -1.7 5,206,367 - +0.8 5,206,367 - -2.8 5,206,367 - -0.7 5,206,367 - -0.9 5,206,367 - +0.1 5,206,367 - +0.7 5,206,367 - -0.3 5,206,367 - -0.1 5,206,367 - +0.2 5,206,367 - +0.6 5,206,367 - -0.6 5,206,367 - +0.6 5,206,367 - +0.4 5,206,367 - -1.5 5,206,367 - -0.6 5,206,367 - +0.4 5,206,367 - +0.0 5,206,367 - -0.3 5,206,367 - +0.5 5,206,367 - -0.6 5,206,372 + +1.6 5,206,372 + -0.0 5,206,372 + -1.8 5,206,372 + +0.3 5,206,372 + -0.7 5,206,372 + -0.4 5,206,372 + +0.7 5,206,373 - -0.7 5,206,373 - +0.1 5,206,373 - -1.3 5,206,373 - +0.5 5,206,373 - -1.6 5,206,412 + -0.1 5,206,412 + +1.3 5,206,412 + +0.3 5,206,412 + -1.1 5,206,413 - -1.4 5,206,413 - -0.0 5,206,413 - +0.9 5,206,413 - -0.6 5,206,413 - -1.0 5,206,416 + -1.0 5,206,416 + +0.2 5,206,416 + +0.4 5,206,416 + +0.6 5,206,417 - -0.4 5,206,417 - +0.5 5,206,417 - -0.7 5,206,417 - +0.8 5,206,492 + PFR28_04558 0.11 -0.4 5,206,492 + PFR28_04558 0.11 -0.8 5,206,492 + PFR28_04558 0.11 -1.4 5,206,493 - PFR28_04558 0.11 -0.0 5,206,493 - PFR28_04558 0.11 +0.8 5,206,493 - PFR28_04558 0.11 -0.9 5,206,651 + PFR28_04558 0.23 +0.0 5,206,652 - PFR28_04558 0.23 +0.3 5,206,725 + PFR28_04558 0.28 -0.8 5,206,725 + PFR28_04558 0.28 -0.4 5,206,725 + PFR28_04558 0.28 -0.8 5,206,725 + PFR28_04558 0.28 +0.2 5,206,725 + PFR28_04558 0.28 +1.1 5,206,726 - PFR28_04558 0.28 -0.7 5,206,726 - PFR28_04558 0.28 -0.2 5,206,782 - PFR28_04558 0.33 -1.1 5,206,867 + PFR28_04558 0.39 -1.9 5,206,867 + PFR28_04558 0.39 -0.5 5,206,867 + PFR28_04558 0.39 -1.4 5,206,867 + PFR28_04558 0.39 -1.0 5,206,867 + PFR28_04558 0.39 -2.1 5,206,867 + PFR28_04558 0.39 +1.1 5,206,867 + PFR28_04558 0.39 -0.5 5,206,867 + PFR28_04558 0.39 +0.5 5,206,867 + PFR28_04558 0.39 -2.6 5,206,867 + PFR28_04558 0.39 -1.6 5,206,867 + PFR28_04558 0.39 -1.7 5,206,868 - PFR28_04558 0.39 -1.0 5,206,868 - PFR28_04558 0.39 -1.3 5,206,868 - PFR28_04558 0.39 +0.2 5,206,868 - PFR28_04558 0.39 -0.1 5,206,966 + PFR28_04558 0.46 -0.9 5,206,966 + PFR28_04558 0.46 -0.1 5,206,966 + PFR28_04558 0.46 -0.0 5,206,966 + PFR28_04558 0.46 -0.2 5,206,967 - PFR28_04558 0.46 +0.9 5,206,967 - PFR28_04558 0.46 -2.4 5,207,000 + PFR28_04558 0.49 -0.8 5,207,001 - PFR28_04558 0.49 +0.5 5,207,120 + PFR28_04558 0.57 -1.4 5,207,120 + PFR28_04558 0.57 -1.6 5,207,120 + PFR28_04558 0.57 -0.6 5,207,121 - PFR28_04558 0.57 -0.5 5,207,121 - PFR28_04558 0.57 -2.6 5,207,194 + PFR28_04558 0.63 -0.4 5,207,195 - PFR28_04558 0.63 +1.3 5,207,195 - PFR28_04558 0.63 -0.1
Or see this region's nucleotide sequence