Strain Fitness in Pseudomonas sp. RS175 around PFR28_03883

Experiment: Cytidine carbon 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_03881 and PFR28_03882 overlap by 8 nucleotidesPFR28_03882 and PFR28_03883 overlap by 4 nucleotidesPFR28_03883 and PFR28_03884 are separated by 244 nucleotides PFR28_03881: PFR28_03881 - hypothetical protein, at 4,457,130 to 4,457,414 _03881 PFR28_03882: PFR28_03882 - Flavin prenyltransferase UbiX, at 4,457,407 to 4,458,054 _03882 PFR28_03883: PFR28_03883 - UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase, at 4,458,051 to 4,459,400 _03883 PFR28_03884: PFR28_03884 - Acetoin catabolism regulatory protein, at 4,459,645 to 4,461,549 _03884 Position (kb) 4458 4459 4460Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4457.081 kb on - strandat 4457.115 kb on + strandat 4457.115 kb on + strandat 4457.115 kb on + strandat 4457.116 kb on - strandat 4457.131 kb on + strandat 4457.131 kb on + strandat 4457.131 kb on + strandat 4457.131 kb on + strandat 4457.132 kb on - strandat 4457.132 kb on - strandat 4457.132 kb on - strandat 4457.132 kb on - strandat 4457.293 kb on + strand, within PFR28_03881at 4457.293 kb on + strand, within PFR28_03881at 4457.293 kb on + strand, within PFR28_03881at 4457.293 kb on + strand, within PFR28_03881at 4457.294 kb on - strand, within PFR28_03881at 4457.294 kb on - strand, within PFR28_03881at 4457.317 kb on + strand, within PFR28_03881at 4457.317 kb on + strand, within PFR28_03881at 4457.317 kb on + strand, within PFR28_03881at 4457.317 kb on + strand, within PFR28_03881at 4457.317 kb on + strand, within PFR28_03881at 4457.317 kb on + strand, within PFR28_03881at 4457.317 kb on + strand, within PFR28_03881at 4457.317 kb on + strand, within PFR28_03881at 4457.317 kb on + strand, within PFR28_03881at 4457.318 kb on - strand, within PFR28_03881at 4457.318 kb on - strand, within PFR28_03881at 4457.318 kb on - strand, within PFR28_03881at 4457.318 kb on - strand, within PFR28_03881at 4457.318 kb on - strand, within PFR28_03881at 4457.318 kb on - strand, within PFR28_03881at 4457.318 kb on - strand, within PFR28_03881at 4457.318 kb on - strand, within PFR28_03881at 4457.318 kb on - strand, within PFR28_03881at 4457.318 kb on - strand, within PFR28_03881at 4457.319 kb on + strand, within PFR28_03881at 4457.319 kb on + strand, within PFR28_03881at 4457.319 kb on + strand, within PFR28_03881at 4457.319 kb on + strand, within PFR28_03881at 4457.319 kb on + strand, within PFR28_03881at 4457.319 kb on + strand, within PFR28_03881at 4457.319 kb on + strand, within PFR28_03881at 4457.319 kb on + strand, within PFR28_03881at 4457.319 kb on + strand, within PFR28_03881at 4457.319 kb on + strand, within PFR28_03881at 4457.319 kb on + strand, within PFR28_03881at 4457.319 kb on + strand, within PFR28_03881at 4457.319 kb on + strand, within PFR28_03881at 4457.319 kb on + strand, within PFR28_03881at 4457.320 kb on - strand, within PFR28_03881at 4457.320 kb on - strand, within PFR28_03881at 4457.320 kb on - strand, within PFR28_03881at 4457.320 kb on - strand, within PFR28_03881at 4457.320 kb on - strand, within PFR28_03881at 4457.320 kb on - strand, within PFR28_03881at 4457.320 kb on - strand, within PFR28_03881at 4457.320 kb on - strand, within PFR28_03881at 4457.355 kb on - strand, within PFR28_03881at 4457.408 kb on + strandat 4457.408 kb on + strandat 4457.408 kb on + strandat 4457.408 kb on + strandat 4457.408 kb on + strandat 4457.409 kb on - strandat 4457.409 kb on - strandat 4457.409 kb on - strandat 4457.409 kb on - strandat 4458.245 kb on - strand, within PFR28_03883at 4458.245 kb on - strand, within PFR28_03883at 4458.333 kb on - strand, within PFR28_03883at 4458.422 kb on - strand, within PFR28_03883at 4458.422 kb on - strand, within PFR28_03883at 4458.422 kb on - strand, within PFR28_03883at 4458.422 kb on - strand, within PFR28_03883at 4458.422 kb on - strand, within PFR28_03883at 4458.422 kb on - strand, within PFR28_03883at 4458.459 kb on - strand, within PFR28_03883at 4458.774 kb on - strand, within PFR28_03883at 4458.774 kb on - strand, within PFR28_03883at 4458.774 kb on - strand, within PFR28_03883at 4458.774 kb on - strand, within PFR28_03883at 4458.777 kb on + strand, within PFR28_03883at 4458.777 kb on + strand, within PFR28_03883at 4458.778 kb on - strand, within PFR28_03883at 4458.778 kb on - strand, within PFR28_03883at 4458.778 kb on - strand, within PFR28_03883at 4458.778 kb on - strand, within PFR28_03883at 4458.778 kb on - strand, within PFR28_03883at 4458.778 kb on - strand, within PFR28_03883at 4459.139 kb on - strand, within PFR28_03883at 4459.139 kb on - strand, within PFR28_03883at 4459.139 kb on - strand, within PFR28_03883at 4459.139 kb on - strand, within PFR28_03883at 4459.163 kb on - strand, within PFR28_03883at 4459.163 kb on - strand, within PFR28_03883at 4459.244 kb on - strand, within PFR28_03883at 4459.244 kb on - strand, within PFR28_03883at 4459.389 kb on - strandat 4459.401 kb on - strandat 4459.412 kb on + strandat 4459.413 kb on - strandat 4459.430 kb on + strandat 4459.436 kb on - strandat 4459.480 kb on + strandat 4459.480 kb on + strandat 4459.480 kb on + strandat 4459.480 kb on + strandat 4459.480 kb on + strandat 4459.481 kb on - strandat 4459.630 kb on + strandat 4459.630 kb on + strandat 4459.630 kb on + strandat 4459.630 kb on + strandat 4459.630 kb on + strandat 4459.631 kb on - strandat 4459.631 kb on - strandat 4459.686 kb on + strandat 4459.687 kb on - strandat 4459.687 kb on - strandat 4460.076 kb on - strand, within PFR28_03884at 4460.078 kb on + strand, within PFR28_03884at 4460.078 kb on + strand, within PFR28_03884at 4460.078 kb on + strand, within PFR28_03884at 4460.078 kb on + strand, within PFR28_03884at 4460.078 kb on + strand, within PFR28_03884at 4460.078 kb on + strand, within PFR28_03884at 4460.078 kb on + strand, within PFR28_03884at 4460.078 kb on + strand, within PFR28_03884at 4460.078 kb on + strand, within PFR28_03884at 4460.078 kb on + strand, within PFR28_03884at 4460.079 kb on - strand, within PFR28_03884at 4460.079 kb on - strand, within PFR28_03884at 4460.079 kb on - strand, within PFR28_03884at 4460.079 kb on - strand, within PFR28_03884at 4460.079 kb on - strand, within PFR28_03884

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine carbon 10 mM
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4,457,081 - -1.3
4,457,115 + -0.9
4,457,115 + +1.2
4,457,115 + +0.0
4,457,116 - -1.5
4,457,131 + -1.1
4,457,131 + -0.3
4,457,131 + -0.2
4,457,131 + -0.8
4,457,132 - -1.8
4,457,132 - -1.2
4,457,132 - -0.1
4,457,132 - -0.3
4,457,293 + PFR28_03881 0.57 +0.8
4,457,293 + PFR28_03881 0.57 +0.4
4,457,293 + PFR28_03881 0.57 +0.9
4,457,293 + PFR28_03881 0.57 +0.1
4,457,294 - PFR28_03881 0.58 +1.4
4,457,294 - PFR28_03881 0.58 +0.6
4,457,317 + PFR28_03881 0.66 -0.8
4,457,317 + PFR28_03881 0.66 -0.1
4,457,317 + PFR28_03881 0.66 -2.4
4,457,317 + PFR28_03881 0.66 +0.7
4,457,317 + PFR28_03881 0.66 +0.2
4,457,317 + PFR28_03881 0.66 -0.3
4,457,317 + PFR28_03881 0.66 -3.4
4,457,317 + PFR28_03881 0.66 +1.6
4,457,317 + PFR28_03881 0.66 +1.1
4,457,318 - PFR28_03881 0.66 +0.0
4,457,318 - PFR28_03881 0.66 +0.6
4,457,318 - PFR28_03881 0.66 -0.2
4,457,318 - PFR28_03881 0.66 +0.5
4,457,318 - PFR28_03881 0.66 +0.2
4,457,318 - PFR28_03881 0.66 +0.1
4,457,318 - PFR28_03881 0.66 -0.4
4,457,318 - PFR28_03881 0.66 +0.6
4,457,318 - PFR28_03881 0.66 -0.4
4,457,318 - PFR28_03881 0.66 +1.0
4,457,319 + PFR28_03881 0.66 +1.1
4,457,319 + PFR28_03881 0.66 -3.1
4,457,319 + PFR28_03881 0.66 +0.6
4,457,319 + PFR28_03881 0.66 +0.1
4,457,319 + PFR28_03881 0.66 +0.1
4,457,319 + PFR28_03881 0.66 -1.6
4,457,319 + PFR28_03881 0.66 -0.5
4,457,319 + PFR28_03881 0.66 -0.3
4,457,319 + PFR28_03881 0.66 +1.9
4,457,319 + PFR28_03881 0.66 +0.0
4,457,319 + PFR28_03881 0.66 +0.8
4,457,319 + PFR28_03881 0.66 -2.0
4,457,319 + PFR28_03881 0.66 -0.6
4,457,319 + PFR28_03881 0.66 +0.8
4,457,320 - PFR28_03881 0.67 +0.2
4,457,320 - PFR28_03881 0.67 -0.5
4,457,320 - PFR28_03881 0.67 -0.4
4,457,320 - PFR28_03881 0.67 -1.1
4,457,320 - PFR28_03881 0.67 -1.7
4,457,320 - PFR28_03881 0.67 -1.5
4,457,320 - PFR28_03881 0.67 +1.4
4,457,320 - PFR28_03881 0.67 -0.7
4,457,355 - PFR28_03881 0.79 +0.1
4,457,408 + +0.0
4,457,408 + +0.8
4,457,408 + +0.6
4,457,408 + -0.2
4,457,408 + +0.3
4,457,409 - +1.2
4,457,409 - -0.5
4,457,409 - +2.6
4,457,409 - -1.7
4,458,245 - PFR28_03883 0.14 -2.8
4,458,245 - PFR28_03883 0.14 -2.5
4,458,333 - PFR28_03883 0.21 -2.7
4,458,422 - PFR28_03883 0.27 -0.9
4,458,422 - PFR28_03883 0.27 -0.8
4,458,422 - PFR28_03883 0.27 -1.0
4,458,422 - PFR28_03883 0.27 -3.3
4,458,422 - PFR28_03883 0.27 -1.1
4,458,422 - PFR28_03883 0.27 -1.2
4,458,459 - PFR28_03883 0.30 -0.5
4,458,774 - PFR28_03883 0.54 -1.7
4,458,774 - PFR28_03883 0.54 -1.7
4,458,774 - PFR28_03883 0.54 -0.3
4,458,774 - PFR28_03883 0.54 +0.0
4,458,777 + PFR28_03883 0.54 -1.7
4,458,777 + PFR28_03883 0.54 -1.4
4,458,778 - PFR28_03883 0.54 -2.5
4,458,778 - PFR28_03883 0.54 +1.3
4,458,778 - PFR28_03883 0.54 -1.8
4,458,778 - PFR28_03883 0.54 +0.8
4,458,778 - PFR28_03883 0.54 -3.8
4,458,778 - PFR28_03883 0.54 -0.7
4,459,139 - PFR28_03883 0.81 -2.3
4,459,139 - PFR28_03883 0.81 -1.4
4,459,139 - PFR28_03883 0.81 +0.9
4,459,139 - PFR28_03883 0.81 -0.7
4,459,163 - PFR28_03883 0.82 -0.5
4,459,163 - PFR28_03883 0.82 -1.0
4,459,244 - PFR28_03883 0.88 -2.2
4,459,244 - PFR28_03883 0.88 +0.2
4,459,389 - +0.4
4,459,401 - +0.2
4,459,412 + -0.9
4,459,413 - -0.4
4,459,430 + +0.3
4,459,436 - -2.7
4,459,480 + +2.2
4,459,480 + +0.9
4,459,480 + +0.6
4,459,480 + +0.1
4,459,480 + -1.4
4,459,481 - -0.3
4,459,630 + +1.0
4,459,630 + -0.8
4,459,630 + +0.5
4,459,630 + -0.0
4,459,630 + -0.8
4,459,631 - +0.7
4,459,631 - +0.1
4,459,686 + -0.5
4,459,687 - +0.9
4,459,687 - -1.2
4,460,076 - PFR28_03884 0.23 -0.2
4,460,078 + PFR28_03884 0.23 +1.9
4,460,078 + PFR28_03884 0.23 -2.6
4,460,078 + PFR28_03884 0.23 +1.0
4,460,078 + PFR28_03884 0.23 -0.1
4,460,078 + PFR28_03884 0.23 -0.8
4,460,078 + PFR28_03884 0.23 -0.6
4,460,078 + PFR28_03884 0.23 -1.2
4,460,078 + PFR28_03884 0.23 -1.3
4,460,078 + PFR28_03884 0.23 +0.0
4,460,078 + PFR28_03884 0.23 +0.1
4,460,079 - PFR28_03884 0.23 -2.1
4,460,079 - PFR28_03884 0.23 -0.1
4,460,079 - PFR28_03884 0.23 -0.7
4,460,079 - PFR28_03884 0.23 -1.7
4,460,079 - PFR28_03884 0.23 -1.5

Or see this region's nucleotide sequence