Strain Fitness in Pseudomonas sp. RS175 around PFR28_02485

Experiment: Cytidine carbon 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine carbon 10 mM
2,961,099	+		PFR28_02484	0.12	+2.1
2,961,100	-		PFR28_02484	0.12	+2.2
2,961,100	-		PFR28_02484	0.12	+2.0
2,961,100	-		PFR28_02484	0.12	+2.0
2,961,100	-		PFR28_02484	0.12	+2.4
2,961,100	-		PFR28_02484	0.12	+2.0
2,961,100	-		PFR28_02484	0.12	+1.9
2,961,199	+		PFR28_02484	0.24	+1.9
2,961,216	+		PFR28_02484	0.26	+2.3
2,961,216	+		PFR28_02484	0.26	+1.4
2,961,216	+		PFR28_02484	0.26	+2.2
2,961,216	+		PFR28_02484	0.26	+1.7
2,961,217	-		PFR28_02484	0.26	+2.1
2,961,217	-		PFR28_02484	0.26	+1.9
2,961,288	+		PFR28_02484	0.35	+2.3
2,961,288	+		PFR28_02484	0.35	+2.1
2,961,289	-		PFR28_02484	0.35	+2.2
2,961,289	-		PFR28_02484	0.35	+2.8
2,961,289	-		PFR28_02484	0.35	+1.5
2,961,327	+		PFR28_02484	0.39	+1.7
2,961,327	+		PFR28_02484	0.39	-1.3
2,961,327	+		PFR28_02484	0.39	+2.1
2,961,327	+		PFR28_02484	0.39	+2.2
2,961,327	+		PFR28_02484	0.39	+1.5
2,961,327	+		PFR28_02484	0.39	-0.1
2,961,328	-		PFR28_02484	0.40	+1.6
2,961,328	-		PFR28_02484	0.40	+2.3
2,961,328	-		PFR28_02484	0.40	+2.2
2,961,390	+		PFR28_02484	0.47	+2.4
2,961,390	+		PFR28_02484	0.47	+0.2
2,961,390	+		PFR28_02484	0.47	+1.8
2,961,540	+		PFR28_02484	0.65	+2.1
2,961,541	-		PFR28_02484	0.65	+1.5
2,961,585	+		PFR28_02484	0.70	+2.7
2,961,586	-		PFR28_02484	0.70	+2.2
2,961,586	-		PFR28_02484	0.70	+1.4
2,961,627	+		PFR28_02484	0.75	+0.6
2,961,628	-		PFR28_02484	0.75	+2.5
2,961,628	-		PFR28_02484	0.75	+1.5
2,961,775	+				+1.1
2,961,797	-				+2.1
2,961,835	+				+1.5
2,961,835	+				+3.1
2,961,835	+				+2.9
2,961,835	+				+2.3
2,961,835	+				+2.9
2,961,835	+				+1.6
2,961,835	+				+3.3
2,961,836	-				+2.1
2,961,836	-				+0.9
2,961,836	-				+0.2
2,961,836	-				+0.6
2,961,836	-				+1.6
2,961,836	-				+1.3
2,961,847	+				+2.8
2,961,847	+				+2.1
2,961,847	+				+2.2
2,961,847	+				+2.8
2,961,847	+				+2.8
2,961,848	-				+2.2
2,961,848	-				-0.5
2,961,848	-				-0.1
2,961,848	-				-0.2
2,961,848	-				+0.8
2,961,860	+				+1.9
2,961,861	-				+0.4
2,961,883	-				-0.4
2,961,893	+				+2.0
2,961,902	+				+2.0
2,961,902	+				+2.2
2,961,902	+				+2.1
2,961,902	+				+1.9
2,961,902	+				+1.4
2,961,902	+				+2.0
2,961,902	+				+2.5
2,961,902	+				+1.0
2,961,902	+				+1.5
2,961,902	+				+1.6
2,961,902	+				+1.9
2,961,902	+				+1.5
2,961,902	+				+2.0
2,961,902	+				+2.3
2,961,902	+				+1.5
2,961,902	+				+1.2
2,961,902	+				+1.9
2,961,903	-				-0.3
2,961,903	-				-0.1
2,961,903	-				-2.5
2,961,903	-				-0.3
2,961,903	-				+1.8
2,961,903	-				-1.1
2,961,903	-				+0.5
2,961,903	-				+1.5
2,961,903	-				+0.0
2,961,903	-				-2.0
2,961,903	-				+0.2
2,961,903	-				-1.4
2,961,903	-				+0.5
2,961,903	-				-0.1
2,961,936	-				-1.3
2,961,944	-				-1.1
2,961,956	-				+1.7
2,961,997	+				-2.0
2,961,997	+				-0.8
2,962,032	+				-0.8
2,962,032	+				+0.2
2,962,032	+				-1.4
2,962,032	+				+0.5
2,962,033	-				-0.7
2,962,033	-				-1.2
2,962,033	-				-0.8
2,962,033	-				-0.2
2,962,033	-				+1.7
2,962,033	-				+0.1
2,962,033	-				-0.0
2,962,033	-				-1.4
2,962,141	+		PFR28_02485	0.34	-1.3
2,962,141	+		PFR28_02485	0.34	-0.6
2,962,141	+		PFR28_02485	0.34	-1.0
2,962,142	-		PFR28_02485	0.34	-0.7
2,962,142	-		PFR28_02485	0.34	+0.1
2,962,551	+		PFR28_02486	0.67	-1.1
2,962,552	-		PFR28_02486	0.67	+0.5
2,962,666	+				+0.2
2,962,666	+				-0.3
2,962,667	-				+0.1
2,962,667	-				+0.5
2,962,681	-				-1.2
2,962,755	+				+0.6
2,962,755	+				-1.3
2,962,755	+				-1.6
2,962,756	-				-0.7
2,962,756	-				+0.3
2,962,756	-				-2.9
2,962,756	-				-0.6
2,962,803	-				+1.2
2,962,844	+				-2.1
2,962,844	+				-0.8
2,962,845	-				-0.1
2,963,001	+		PFR28_02487	0.44	+0.9
2,963,001	+		PFR28_02487	0.44	+0.4
2,963,001	+		PFR28_02487	0.44	-0.0
2,963,001	+		PFR28_02487	0.44	-1.7
2,963,001	+		PFR28_02487	0.44	+4.1
2,963,001	+		PFR28_02487	0.44	-0.1
2,963,001	+		PFR28_02487	0.44	-0.3
2,963,002	-		PFR28_02487	0.44	-0.7
2,963,002	-		PFR28_02487	0.44	+0.5
2,963,002	-		PFR28_02487	0.44	+0.6
2,963,002	-		PFR28_02487	0.44	-0.4
2,963,002	-		PFR28_02487	0.44	+0.8
2,963,002	-		PFR28_02487	0.44	+1.9
2,963,002	-		PFR28_02487	0.44	+0.2
2,963,002	-		PFR28_02487	0.44	-2.4
2,963,002	-		PFR28_02487	0.44	+0.1
2,963,002	-		PFR28_02487	0.44	+0.2
2,963,002	-		PFR28_02487	0.44	-2.5
2,963,002	-		PFR28_02487	0.44	-1.0
2,963,002	-		PFR28_02487	0.44	-0.6
2,963,002	-		PFR28_02487	0.44	-0.5
2,963,002	-		PFR28_02487	0.44	-1.8
2,963,002	-		PFR28_02487	0.44	-2.1
2,963,002	-		PFR28_02487	0.44	+0.4
2,963,002	-		PFR28_02487	0.44	+0.5
2,963,002	-		PFR28_02487	0.44	+0.4
2,963,002	-		PFR28_02487	0.44	+0.2
2,963,002	-		PFR28_02487	0.44	-0.5
2,963,002	-		PFR28_02487	0.44	+1.2
2,963,173	+				-0.1
2,963,197	+				-0.5
2,963,197	+				-2.1
2,963,222	+		PFR28_02488	0.11	-0.8
2,963,222	+		PFR28_02488	0.11	-0.0
2,963,222	+		PFR28_02488	0.11	+1.2
2,963,222	+		PFR28_02488	0.11	-0.5
2,963,222	+		PFR28_02488	0.11	-1.1
2,963,222	+		PFR28_02488	0.11	+2.5
2,963,222	+		PFR28_02488	0.11	-0.1
2,963,222	+		PFR28_02488	0.11	-0.3
2,963,222	+		PFR28_02488	0.11	+0.8
2,963,222	+		PFR28_02488	0.11	+0.9
2,963,222	+		PFR28_02488	0.11	-2.2
2,963,223	-		PFR28_02488	0.11	-0.4
2,963,223	-		PFR28_02488	0.11	-0.7
2,963,223	-		PFR28_02488	0.11	-0.2
2,963,223	-		PFR28_02488	0.11	+1.0
2,963,234	+		PFR28_02488	0.18	+1.3
2,963,234	+		PFR28_02488	0.18	+0.5
2,963,234	+		PFR28_02488	0.18	-3.5
2,963,235	-		PFR28_02488	0.18	-0.5
2,963,235	-		PFR28_02488	0.18	+0.2
2,963,235	-		PFR28_02488	0.18	+0.0
2,963,235	-		PFR28_02488	0.18	+1.4
2,963,235	-		PFR28_02488	0.18	+1.7