Strain Fitness in Pseudomonas sp. RS175 around PFR28_01317

Experiment: Cytidine carbon 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine carbon 10 mM
1,428,820	+				+0.7
1,428,820	+				+0.7
1,428,820	+				-0.1
1,428,820	+				-1.8
1,428,821	-				+1.1
1,428,821	-				-1.8
1,428,821	-				+0.4
1,428,821	-				-1.2
1,428,853	+				-1.5
1,428,854	-				+0.8
1,428,854	-				-1.9
1,428,854	-				+0.4
1,428,854	-				-1.0
1,428,994	+		PFR28_01315	0.34	+0.0
1,429,077	+		PFR28_01315	0.50	-0.5
1,429,078	-		PFR28_01315	0.51	+1.5
1,429,156	-		PFR28_01315	0.66	-0.6
1,429,425	+				+0.6
1,429,425	+				+1.5
1,429,425	+				+0.1
1,429,425	+				+0.2
1,429,425	+				-2.7
1,429,425	+				-0.5
1,429,426	-				-0.8
1,429,426	-				-0.8
1,429,427	+				+1.9
1,429,427	+				-0.4
1,429,427	+				-0.4
1,429,427	+				+1.5
1,429,427	+				-1.5
1,429,427	+				+2.3
1,429,427	+				+0.5
1,429,427	+				-0.4
1,429,428	-				-1.4
1,429,428	-				-1.7
1,429,428	-				-0.9
1,429,428	-				-0.7
1,429,596	+				+0.4
1,429,597	-				+1.9
1,429,597	-				+1.5
1,429,643	+				-1.0
1,429,643	+				+0.4
1,429,643	+				+1.5
1,429,644	-				+0.5
1,429,695	-				-0.2
1,429,736	+				-0.2
1,429,736	+				-0.9
1,429,736	+				+0.1
1,429,736	+				-1.3
1,429,737	-				-0.5
1,429,737	-				-0.2
1,429,737	-				-0.6
1,429,749	+				+0.0
1,429,777	-				-0.6
1,429,777	-				-2.1
1,429,777	-				+1.5
1,429,824	+				+1.1
1,429,824	+				-1.3
1,429,825	-				-0.1
1,429,825	-				+0.9
1,429,869	-				+1.2
1,429,869	-				-1.5
1,429,869	-				-0.5
1,429,869	-				+0.5
1,430,084	-		PFR28_01317	0.15	-1.0
1,430,100	+		PFR28_01317	0.15	-1.5
1,430,167	-		PFR28_01317	0.19	-0.4
1,430,371	-		PFR28_01317	0.29	-2.8
1,430,404	+		PFR28_01317	0.31	-1.0
1,430,404	+		PFR28_01317	0.31	+0.5
1,430,404	+		PFR28_01317	0.31	-1.6
1,430,405	-		PFR28_01317	0.31	-0.6
1,430,405	-		PFR28_01317	0.31	+0.0
1,430,436	+		PFR28_01317	0.32	-0.8
1,430,436	+		PFR28_01317	0.32	-1.3
1,430,437	-		PFR28_01317	0.32	+0.5
1,430,437	-		PFR28_01317	0.32	-1.5
1,430,839	-		PFR28_01317	0.52	+0.5
1,430,890	-		PFR28_01317	0.55	-1.8
1,430,890	-		PFR28_01317	0.55	+0.4
1,431,043	-		PFR28_01317	0.63	-0.5
1,431,126	+		PFR28_01317	0.67	-2.2
1,431,126	+		PFR28_01317	0.67	-0.3
1,431,126	+		PFR28_01317	0.67	-1.6
1,431,126	+		PFR28_01317	0.67	+1.2
1,431,127	-		PFR28_01317	0.67	-0.4
1,431,127	-		PFR28_01317	0.67	-2.0
1,431,127	-		PFR28_01317	0.67	-0.5
1,431,127	-		PFR28_01317	0.67	-1.7
1,431,128	+		PFR28_01317	0.67	-2.3
1,431,128	+		PFR28_01317	0.67	+0.3
1,431,128	+		PFR28_01317	0.67	-0.3
1,431,128	+		PFR28_01317	0.67	-2.2
1,431,128	+		PFR28_01317	0.67	-0.8
1,431,128	+		PFR28_01317	0.67	+0.5
1,431,128	+		PFR28_01317	0.67	-3.0
1,431,128	+		PFR28_01317	0.67	-0.4
1,431,128	+		PFR28_01317	0.67	-1.6
1,431,128	+		PFR28_01317	0.67	-3.6
1,431,128	+		PFR28_01317	0.67	+0.6
1,431,129	-		PFR28_01317	0.67	-1.1
1,431,129	-		PFR28_01317	0.67	-3.8
1,431,129	-		PFR28_01317	0.67	+0.5
1,431,129	-		PFR28_01317	0.67	+0.4
1,431,129	-		PFR28_01317	0.67	-1.9
1,431,129	-		PFR28_01317	0.67	-3.5
1,431,129	-		PFR28_01317	0.67	-0.5
1,431,129	-		PFR28_01317	0.67	-2.0
1,431,129	-		PFR28_01317	0.67	-1.5
1,431,129	-		PFR28_01317	0.67	-0.6
1,431,129	-		PFR28_01317	0.67	+0.9
1,431,129	-		PFR28_01317	0.67	-0.2
1,431,129	-		PFR28_01317	0.67	-0.0
1,431,129	-		PFR28_01317	0.67	+1.0
1,431,129	-		PFR28_01317	0.67	-1.5
1,431,129	-		PFR28_01317	0.67	-2.0
1,431,129	-		PFR28_01317	0.67	-0.8
1,431,129	-		PFR28_01317	0.67	+0.3
1,431,129	-		PFR28_01317	0.67	+0.1
1,431,132	+		PFR28_01317	0.67	-1.6
1,431,132	+		PFR28_01317	0.67	-0.8
1,431,132	+		PFR28_01317	0.67	-1.2
1,431,132	+		PFR28_01317	0.67	-1.0
1,431,132	+		PFR28_01317	0.67	-0.8
1,431,132	+		PFR28_01317	0.67	-3.2
1,431,132	+		PFR28_01317	0.67	-1.1
1,431,132	+		PFR28_01317	0.67	+1.1
1,431,132	+		PFR28_01317	0.67	-0.6
1,431,132	+		PFR28_01317	0.67	-0.8
1,431,132	+		PFR28_01317	0.67	-2.3
1,431,132	+		PFR28_01317	0.67	-1.9
1,431,132	+		PFR28_01317	0.67	-1.6
1,431,132	+		PFR28_01317	0.67	-2.5
1,431,132	+		PFR28_01317	0.67	-1.6
1,431,132	+		PFR28_01317	0.67	-3.1
1,431,133	-		PFR28_01317	0.67	-1.9
1,431,133	-		PFR28_01317	0.67	+0.5
1,431,133	-		PFR28_01317	0.67	+0.4
1,431,133	-		PFR28_01317	0.67	-1.3
1,431,133	-		PFR28_01317	0.67	-0.2
1,431,150	-		PFR28_01317	0.68	-0.3
1,431,171	+		PFR28_01317	0.69	-1.6
1,431,171	+		PFR28_01317	0.69	-1.1
1,431,333	+		PFR28_01317	0.77	-0.8
1,431,333	+		PFR28_01317	0.77	-0.8
1,431,333	+		PFR28_01317	0.77	-1.6
1,431,334	-		PFR28_01317	0.77	-0.8
1,431,334	-		PFR28_01317	0.77	-0.5
1,431,334	-		PFR28_01317	0.77	+0.8
1,431,334	-		PFR28_01317	0.77	+0.2
1,431,334	-		PFR28_01317	0.77	-0.9
1,431,334	-		PFR28_01317	0.77	+1.5
1,431,334	-		PFR28_01317	0.77	-1.1
1,431,384	+		PFR28_01317	0.80	-2.4
1,431,384	+		PFR28_01317	0.80	-1.9
1,431,402	+		PFR28_01317	0.80	-0.7
1,431,402	+		PFR28_01317	0.80	-1.9
1,431,403	-		PFR28_01317	0.81	-1.4
1,431,470	+		PFR28_01317	0.84	-2.6
1,431,471	-		PFR28_01317	0.84	-0.4
1,431,497	+		PFR28_01317	0.85	+0.5
1,431,498	-		PFR28_01317	0.85	-2.1
1,431,519	+		PFR28_01317	0.86	+0.1
1,431,519	+		PFR28_01317	0.86	-1.1
1,431,519	+		PFR28_01317	0.86	-1.6
1,431,519	+		PFR28_01317	0.86	-2.6
1,431,520	-		PFR28_01317	0.86	-1.1
1,431,520	-		PFR28_01317	0.86	+1.2
1,431,520	-		PFR28_01317	0.86	-1.0
1,431,520	-		PFR28_01317	0.86	+2.4
1,431,546	+		PFR28_01317	0.88	-1.0
1,431,546	+		PFR28_01317	0.88	+0.8
1,431,547	-		PFR28_01317	0.88	-2.1
1,431,726	+				-1.1
1,431,727	-				-1.5
1,431,727	-				-0.5
1,431,753	+				-3.1
1,431,789	+				+2.8
1,431,790	-				+0.3
1,431,840	+				+0.5
1,431,840	+				-3.9
1,431,882	-				-0.1
1,431,953	+				+0.2
1,431,953	+				+0.3
1,431,954	-				-0.3
1,431,954	-				+0.5
1,431,954	-				-1.3
1,431,971	+				-1.5
1,431,971	+				+0.7
1,431,971	+				-0.8
1,431,971	+				+0.9
1,431,972	-				+0.7
1,431,972	-				-0.9
1,431,972	-				-1.9
1,431,993	-				+1.2
1,432,052	+				+0.3
1,432,052	+				-0.9
1,432,052	+				+0.4
1,432,075	+				+1.0
1,432,075	+				+0.4
1,432,076	-				+0.6
1,432,076	-				-1.3
1,432,097	+				+1.8
1,432,097	+				+1.1
1,432,098	-				+1.1
1,432,161	-				-0.7
1,432,316	+		PFR28_01318	0.12	+0.3
1,432,316	+		PFR28_01318	0.12	+0.4
1,432,316	+		PFR28_01318	0.12	-0.3
1,432,317	-		PFR28_01318	0.12	+0.3
1,432,317	-		PFR28_01318	0.12	+0.1
1,432,317	-		PFR28_01318	0.12	-1.5
1,432,343	+		PFR28_01318	0.13	+0.4
1,432,343	+		PFR28_01318	0.13	-1.8
1,432,343	+		PFR28_01318	0.13	+1.3
1,432,343	+		PFR28_01318	0.13	-1.1
1,432,343	+		PFR28_01318	0.13	+0.4
1,432,344	-		PFR28_01318	0.13	+0.8
1,432,344	-		PFR28_01318	0.13	-0.3
1,432,344	-		PFR28_01318	0.13	+1.1
1,432,344	-		PFR28_01318	0.13	+0.0
1,432,344	-		PFR28_01318	0.13	+0.3
1,432,344	-		PFR28_01318	0.13	-2.7
1,432,344	-		PFR28_01318	0.13	+0.6
1,432,416	-		PFR28_01318	0.15	-1.5
1,432,416	-		PFR28_01318	0.15	+0.0
1,432,416	-		PFR28_01318	0.15	+1.2
1,432,416	-		PFR28_01318	0.15	-0.4
1,432,433	+		PFR28_01318	0.16	+1.3
1,432,433	+		PFR28_01318	0.16	-0.1
1,432,434	-		PFR28_01318	0.16	+1.0
1,432,434	-		PFR28_01318	0.16	+1.1
1,432,434	-		PFR28_01318	0.16	-0.4
1,432,434	-		PFR28_01318	0.16	-0.5
1,432,434	-		PFR28_01318	0.16	+2.3
1,432,551	-		PFR28_01318	0.19	+1.0
1,432,697	+		PFR28_01318	0.24	+0.1
1,432,697	+		PFR28_01318	0.24	-0.8
1,432,697	+		PFR28_01318	0.24	+1.0
1,432,697	+		PFR28_01318	0.24	-1.7
1,432,698	-		PFR28_01318	0.24	+0.0
1,432,698	-		PFR28_01318	0.24	-1.1
1,432,698	-		PFR28_01318	0.24	+0.7
1,432,778	+		PFR28_01318	0.26	-2.4
1,432,778	+		PFR28_01318	0.26	-1.1
1,432,778	+		PFR28_01318	0.26	-0.7
1,432,778	+		PFR28_01318	0.26	+0.8
1,432,778	+		PFR28_01318	0.26	-0.2
1,432,778	+		PFR28_01318	0.26	-0.8
1,432,778	+		PFR28_01318	0.26	-1.8
1,432,778	+		PFR28_01318	0.26	+0.4
1,432,779	-		PFR28_01318	0.26	+0.9
1,432,779	-		PFR28_01318	0.26	-1.6
1,432,779	-		PFR28_01318	0.26	+0.8
1,432,779	-		PFR28_01318	0.26	-0.3
1,432,779	-		PFR28_01318	0.26	+0.4
1,432,779	-		PFR28_01318	0.26	-1.0
1,432,779	-		PFR28_01318	0.26	+0.1
1,432,779	-		PFR28_01318	0.26	-1.7
1,432,779	-		PFR28_01318	0.26	-1.4