Experiment: Cytidine carbon 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_01171 and PFR28_01172 overlap by 1 nucleotides PFR28_01172 and PFR28_01173 overlap by 4 nucleotides PFR28_01173 and PFR28_01174 overlap by 4 nucleotides PFR28_01174 and PFR28_01175 are separated by 135 nucleotides
PFR28_01171: PFR28_01171 - hypothetical protein, at 1,286,523 to 1,287,140
_01171
PFR28_01172: PFR28_01172 - hypothetical protein, at 1,287,140 to 1,288,051
_01172
PFR28_01173: PFR28_01173 - hypothetical protein, at 1,288,048 to 1,288,392
_01173
PFR28_01174: PFR28_01174 - hypothetical protein, at 1,288,389 to 1,288,961
_01174
PFR28_01175: PFR28_01175 - hypothetical protein, at 1,289,097 to 1,289,888
_01175
Position (kb) 1288
1289 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1287.058 kb on - strand, within PFR28_01171 at 1287.141 kb on + strand at 1287.142 kb on - strand at 1287.189 kb on + strand at 1287.189 kb on + strand at 1287.190 kb on - strand at 1287.399 kb on + strand, within PFR28_01172 at 1287.399 kb on + strand, within PFR28_01172 at 1287.400 kb on - strand, within PFR28_01172 at 1287.612 kb on + strand, within PFR28_01172 at 1287.612 kb on + strand, within PFR28_01172 at 1287.612 kb on + strand, within PFR28_01172 at 1287.612 kb on + strand, within PFR28_01172 at 1287.612 kb on + strand, within PFR28_01172 at 1287.612 kb on + strand, within PFR28_01172 at 1287.613 kb on - strand, within PFR28_01172 at 1287.613 kb on - strand, within PFR28_01172 at 1287.613 kb on - strand, within PFR28_01172 at 1287.613 kb on - strand, within PFR28_01172 at 1287.613 kb on - strand, within PFR28_01172 at 1287.613 kb on - strand, within PFR28_01172 at 1287.613 kb on - strand, within PFR28_01172 at 1287.613 kb on - strand, within PFR28_01172 at 1287.613 kb on - strand, within PFR28_01172 at 1287.613 kb on - strand, within PFR28_01172 at 1287.616 kb on + strand, within PFR28_01172 at 1287.617 kb on - strand, within PFR28_01172 at 1287.617 kb on - strand, within PFR28_01172 at 1287.617 kb on - strand, within PFR28_01172 at 1287.954 kb on + strand, within PFR28_01172 at 1287.955 kb on - strand, within PFR28_01172 at 1288.224 kb on - strand, within PFR28_01173 at 1288.224 kb on - strand, within PFR28_01173 at 1288.526 kb on - strand, within PFR28_01174 at 1288.636 kb on + strand, within PFR28_01174 at 1288.636 kb on + strand, within PFR28_01174 at 1288.637 kb on - strand, within PFR28_01174 at 1288.637 kb on - strand, within PFR28_01174 at 1288.951 kb on - strand at 1288.951 kb on - strand at 1288.951 kb on - strand at 1289.011 kb on + strand at 1289.012 kb on - strand at 1289.025 kb on - strand at 1289.025 kb on - strand at 1289.103 kb on + strand at 1289.105 kb on + strand at 1289.117 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine carbon 10 mM remove 1,287,058 - PFR28_01171 0.87 +1.0 1,287,141 + -0.3 1,287,142 - -0.2 1,287,189 + -0.2 1,287,189 + +1.1 1,287,190 - +0.1 1,287,399 + PFR28_01172 0.28 +0.9 1,287,399 + PFR28_01172 0.28 -2.1 1,287,400 - PFR28_01172 0.29 +1.3 1,287,612 + PFR28_01172 0.52 +1.6 1,287,612 + PFR28_01172 0.52 +0.9 1,287,612 + PFR28_01172 0.52 -0.3 1,287,612 + PFR28_01172 0.52 +0.4 1,287,612 + PFR28_01172 0.52 +2.6 1,287,612 + PFR28_01172 0.52 -1.3 1,287,613 - PFR28_01172 0.52 -0.4 1,287,613 - PFR28_01172 0.52 +1.8 1,287,613 - PFR28_01172 0.52 +0.2 1,287,613 - PFR28_01172 0.52 +1.0 1,287,613 - PFR28_01172 0.52 -0.1 1,287,613 - PFR28_01172 0.52 +0.6 1,287,613 - PFR28_01172 0.52 -1.1 1,287,613 - PFR28_01172 0.52 -0.6 1,287,613 - PFR28_01172 0.52 +0.4 1,287,613 - PFR28_01172 0.52 -1.2 1,287,616 + PFR28_01172 0.52 -0.6 1,287,617 - PFR28_01172 0.52 +0.6 1,287,617 - PFR28_01172 0.52 +0.6 1,287,617 - PFR28_01172 0.52 -0.2 1,287,954 + PFR28_01172 0.89 -0.4 1,287,955 - PFR28_01172 0.89 +0.2 1,288,224 - PFR28_01173 0.51 -2.4 1,288,224 - PFR28_01173 0.51 -0.7 1,288,526 - PFR28_01174 0.24 +0.5 1,288,636 + PFR28_01174 0.43 -0.8 1,288,636 + PFR28_01174 0.43 +0.7 1,288,637 - PFR28_01174 0.43 -0.2 1,288,637 - PFR28_01174 0.43 -0.1 1,288,951 - -0.6 1,288,951 - -3.5 1,288,951 - -1.0 1,289,011 + -1.6 1,289,012 - +0.1 1,289,025 - -0.1 1,289,025 - -0.7 1,289,103 + -1.0 1,289,105 + -0.4 1,289,117 + +0.2
Or see this region's nucleotide sequence