Strain Fitness in Pseudomonas sp. RS175 around PFR28_00932

Experiment: Cytidine carbon 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine carbon 10 mM
1,013,656	+		PFR28_00931	0.17	+0.7
1,013,656	+		PFR28_00931	0.17	+0.0
1,013,656	+		PFR28_00931	0.17	-1.5
1,013,662	+		PFR28_00931	0.17	-0.5
1,013,663	-		PFR28_00931	0.17	+0.2
1,013,677	+		PFR28_00931	0.19	-1.4
1,013,709	+		PFR28_00931	0.22	+0.5
1,013,709	+		PFR28_00931	0.22	-0.5
1,013,903	+		PFR28_00931	0.40	-0.2
1,013,904	-		PFR28_00931	0.40	+1.6
1,013,904	-		PFR28_00931	0.40	-2.2
1,013,955	+		PFR28_00931	0.45	-3.4
1,013,955	+		PFR28_00931	0.45	+1.6
1,013,956	-		PFR28_00931	0.45	+1.4
1,013,956	-		PFR28_00931	0.45	-1.2
1,013,956	-		PFR28_00931	0.45	-1.1
1,013,956	-		PFR28_00931	0.45	+0.0
1,013,959	+		PFR28_00931	0.46	-1.8
1,013,959	+		PFR28_00931	0.46	-0.4
1,013,960	-		PFR28_00931	0.46	+1.0
1,013,960	-		PFR28_00931	0.46	+0.1
1,013,960	-		PFR28_00931	0.46	+0.9
1,013,971	+		PFR28_00931	0.47	-0.3
1,013,977	+		PFR28_00931	0.47	-0.7
1,013,977	+		PFR28_00931	0.47	-3.0
1,013,977	+		PFR28_00931	0.47	-0.6
1,013,978	-		PFR28_00931	0.47	+0.7
1,013,978	-		PFR28_00931	0.47	+0.5
1,014,046	-		PFR28_00931	0.54	-0.5
1,014,046	-		PFR28_00931	0.54	+0.2
1,014,046	-		PFR28_00931	0.54	-1.4
1,014,046	-		PFR28_00931	0.54	-1.1
1,014,130	-		PFR28_00931	0.62	-0.0
1,014,136	+		PFR28_00931	0.62	-1.7
1,014,136	+		PFR28_00931	0.62	-0.2
1,014,136	+		PFR28_00931	0.62	+0.8
1,014,136	+		PFR28_00931	0.62	-2.7
1,014,137	-		PFR28_00931	0.63	+0.0
1,014,235	+		PFR28_00931	0.72	+0.6
1,014,236	-		PFR28_00931	0.72	-1.6
1,014,240	+		PFR28_00931	0.72	-1.4
1,014,241	-		PFR28_00931	0.72	+0.7
1,014,241	-		PFR28_00931	0.72	-0.8
1,014,241	-		PFR28_00931	0.72	+1.0
1,014,243	+		PFR28_00931	0.73	-1.7
1,014,244	-		PFR28_00931	0.73	+1.1
1,014,244	-		PFR28_00931	0.73	+0.8
1,014,272	+		PFR28_00931	0.75	+0.3
1,014,272	+		PFR28_00931	0.75	-1.3
1,014,272	+		PFR28_00931	0.75	-0.8
1,014,272	+		PFR28_00931	0.75	+1.4
1,014,272	+		PFR28_00931	0.75	-0.7
1,014,273	-		PFR28_00931	0.76	+0.0
1,014,273	-		PFR28_00931	0.76	+1.1
1,014,273	-		PFR28_00931	0.76	-1.4
1,014,273	-		PFR28_00931	0.76	-0.7
1,014,273	-		PFR28_00931	0.76	-0.7
1,014,273	-		PFR28_00931	0.76	-2.5
1,014,296	+		PFR28_00931	0.78	-0.2
1,014,297	-		PFR28_00931	0.78	-0.9
1,014,297	-		PFR28_00931	0.78	+0.0
1,014,317	+		PFR28_00931	0.80	+0.3
1,014,318	-		PFR28_00931	0.80	-0.4
1,014,318	-		PFR28_00931	0.80	-2.4
1,014,318	-		PFR28_00931	0.80	-0.3
1,014,330	+		PFR28_00931	0.81	-1.7
1,014,330	+		PFR28_00931	0.81	-0.6
1,014,330	+		PFR28_00931	0.81	-0.1
1,014,330	+		PFR28_00931	0.81	+0.8
1,014,330	+		PFR28_00931	0.81	+0.2
1,014,330	+		PFR28_00931	0.81	-0.7
1,014,331	-		PFR28_00931	0.81	+0.1
1,014,331	-		PFR28_00931	0.81	+0.1
1,014,331	-		PFR28_00931	0.81	-1.0
1,014,336	+		PFR28_00931	0.82	-0.3
1,014,437	+				-0.4
1,014,437	+				-1.2
1,014,437	+				+0.3
1,014,438	-				-0.3
1,014,438	-				+1.2
1,014,450	+				-2.7
1,014,450	+				-1.1
1,014,450	+				-0.1
1,014,451	-				-0.1
1,014,451	-				-0.3
1,014,453	+				-1.0
1,014,454	-				-0.2
1,014,454	-				-2.4
1,014,528	-				-1.1
1,014,528	-				-1.7
1,014,528	-				+0.0
1,014,562	+				+0.3
1,014,562	+				+1.3
1,014,562	+				-0.3
1,014,562	+				+0.9
1,014,563	-				-1.3
1,014,563	-				+2.0
1,014,563	-				-2.2
1,014,566	+				-0.9
1,014,566	+				-1.3
1,014,566	+				-0.1
1,014,566	+				-0.2
1,014,566	+				+0.1
1,014,566	+				-0.6
1,014,566	+				+0.5
1,014,566	+				-2.0
1,014,567	-				-0.4
1,014,567	-				-0.4
1,014,567	-				-1.2
1,014,567	-				+0.4
1,014,567	-				-2.1
1,014,567	-				-0.1
1,014,567	-				-2.5
1,014,567	-				+0.3
1,014,567	-				+1.3
1,014,601	+				-1.9
1,014,601	+				+0.5
1,014,601	+				-1.1
1,014,618	+				+0.6
1,014,618	+				-0.0
1,014,618	+				-0.4
1,014,618	+				+1.1
1,014,618	+				+0.0
1,014,618	+				+0.2
1,014,619	-				-1.0
1,014,619	-				-1.9
1,014,619	-				-1.2
1,014,619	-				-0.7
1,014,624	+				-1.7
1,014,624	+				-0.3
1,014,674	+				-2.5
1,014,674	+				+0.4
1,014,674	+				-1.0
1,014,675	-				-0.5
1,014,675	-				-3.7
1,014,675	-				+0.1
1,014,694	-				-0.9
1,014,694	-				-0.4
1,014,835	+		PFR28_00932	0.11	-2.7
1,014,835	+		PFR28_00932	0.11	+0.4
1,014,835	+		PFR28_00932	0.11	-1.5
1,014,835	+		PFR28_00932	0.11	-0.7
1,014,853	+		PFR28_00932	0.12	-2.2
1,014,853	+		PFR28_00932	0.12	-1.0
1,014,854	-		PFR28_00932	0.12	-0.5
1,014,876	+		PFR28_00932	0.13	-1.9
1,014,876	+		PFR28_00932	0.13	-0.3
1,014,876	+		PFR28_00932	0.13	-2.8
1,014,877	-		PFR28_00932	0.13	-1.6
1,014,877	-		PFR28_00932	0.13	-0.4
1,014,877	-		PFR28_00932	0.13	+0.6
1,014,877	-		PFR28_00932	0.13	-0.5
1,014,877	-		PFR28_00932	0.13	-3.3
1,014,928	+		PFR28_00932	0.15	-3.9
1,014,928	+		PFR28_00932	0.15	-1.6
1,014,928	+		PFR28_00932	0.15	-2.5
1,014,928	+		PFR28_00932	0.15	-0.1
1,014,928	+		PFR28_00932	0.15	-2.0
1,014,928	+		PFR28_00932	0.15	-3.8
1,014,929	-		PFR28_00932	0.16	-1.0
1,014,929	-		PFR28_00932	0.16	-1.0
1,014,929	-		PFR28_00932	0.16	-1.0
1,014,929	-		PFR28_00932	0.16	-1.8
1,014,929	-		PFR28_00932	0.16	-1.7
1,014,929	-		PFR28_00932	0.16	+0.1
1,014,934	+		PFR28_00932	0.16	-1.0
1,014,979	+		PFR28_00932	0.18	-1.7
1,014,979	+		PFR28_00932	0.18	-1.6
1,014,979	+		PFR28_00932	0.18	+0.0
1,014,979	+		PFR28_00932	0.18	-1.3
1,014,979	+		PFR28_00932	0.18	-0.9
1,014,979	+		PFR28_00932	0.18	-0.1
1,014,979	+		PFR28_00932	0.18	+0.1
1,014,980	-		PFR28_00932	0.18	-0.3
1,014,980	-		PFR28_00932	0.18	-2.2
1,015,033	+		PFR28_00932	0.21	-1.8
1,015,034	-		PFR28_00932	0.21	+0.7
1,015,034	-		PFR28_00932	0.21	-1.6
1,015,034	-		PFR28_00932	0.21	-0.6
1,015,114	+		PFR28_00932	0.25	+0.0
1,015,114	+		PFR28_00932	0.25	-1.3
1,015,114	+		PFR28_00932	0.25	-2.2
1,015,115	-		PFR28_00932	0.25	-0.8
1,015,115	-		PFR28_00932	0.25	-1.5
1,015,115	-		PFR28_00932	0.25	-2.4
1,015,115	-		PFR28_00932	0.25	-1.0
1,015,115	-		PFR28_00932	0.25	+1.4
1,015,115	-		PFR28_00932	0.25	-0.1
1,015,240	+		PFR28_00932	0.31	-1.4
1,015,240	+		PFR28_00932	0.31	-2.1
1,015,240	+		PFR28_00932	0.31	-0.4
1,015,240	+		PFR28_00932	0.31	-1.0
1,015,240	+		PFR28_00932	0.31	-1.3
1,015,241	-		PFR28_00932	0.31	-2.3
1,015,241	-		PFR28_00932	0.31	-2.1
1,015,241	-		PFR28_00932	0.31	+0.4
1,015,241	-		PFR28_00932	0.31	-0.2
1,015,241	-		PFR28_00932	0.31	-0.8
1,015,241	-		PFR28_00932	0.31	-0.6
1,015,241	-		PFR28_00932	0.31	-0.9
1,015,268	+		PFR28_00932	0.33	-1.0
1,015,268	+		PFR28_00932	0.33	-0.8
1,015,268	+		PFR28_00932	0.33	-1.6
1,015,268	+		PFR28_00932	0.33	-2.5
1,015,268	+		PFR28_00932	0.33	-1.2
1,015,268	+		PFR28_00932	0.33	-0.7
1,015,268	+		PFR28_00932	0.33	-0.6
1,015,268	+		PFR28_00932	0.33	-1.8
1,015,268	+		PFR28_00932	0.33	-3.7
1,015,268	+		PFR28_00932	0.33	+0.4
1,015,268	+		PFR28_00932	0.33	-2.5
1,015,268	+		PFR28_00932	0.33	-0.3
1,015,268	+		PFR28_00932	0.33	+0.4
1,015,268	+		PFR28_00932	0.33	-1.1
1,015,268	+		PFR28_00932	0.33	-2.8
1,015,268	+		PFR28_00932	0.33	-1.0
1,015,268	+		PFR28_00932	0.33	-0.4
1,015,268	+		PFR28_00932	0.33	-0.8
1,015,269	-		PFR28_00932	0.33	-1.5
1,015,269	-		PFR28_00932	0.33	-1.8
1,015,269	-		PFR28_00932	0.33	-3.2
1,015,269	-		PFR28_00932	0.33	-1.0
1,015,269	-		PFR28_00932	0.33	+0.1
1,015,269	-		PFR28_00932	0.33	+0.9
1,015,269	-		PFR28_00932	0.33	-0.8
1,015,269	-		PFR28_00932	0.33	-0.6
1,015,337	+		PFR28_00932	0.36	-2.1
1,015,337	+		PFR28_00932	0.36	-0.6
1,015,337	+		PFR28_00932	0.36	-1.0
1,015,337	+		PFR28_00932	0.36	-0.1
1,015,337	+		PFR28_00932	0.36	-2.0
1,015,337	+		PFR28_00932	0.36	-1.4
1,015,338	-		PFR28_00932	0.36	-3.0
1,015,338	-		PFR28_00932	0.36	+1.2
1,015,338	-		PFR28_00932	0.36	-1.4
1,015,338	-		PFR28_00932	0.36	+1.1
1,015,338	-		PFR28_00932	0.36	-0.8
1,015,338	-		PFR28_00932	0.36	-2.4
1,015,338	-		PFR28_00932	0.36	-0.9
1,015,338	-		PFR28_00932	0.36	-3.4
1,015,370	+		PFR28_00932	0.38	-1.7
1,015,370	+		PFR28_00932	0.38	-0.0
1,015,370	+		PFR28_00932	0.38	+1.7
1,015,370	+		PFR28_00932	0.38	-0.7
1,015,370	+		PFR28_00932	0.38	-0.1
1,015,370	+		PFR28_00932	0.38	-2.3
1,015,370	+		PFR28_00932	0.38	-3.6
1,015,370	+		PFR28_00932	0.38	+0.2
1,015,370	+		PFR28_00932	0.38	-2.3
1,015,370	+		PFR28_00932	0.38	+0.6
1,015,371	-		PFR28_00932	0.38	-1.8
1,015,371	-		PFR28_00932	0.38	-2.2
1,015,371	-		PFR28_00932	0.38	+0.8
1,015,371	-		PFR28_00932	0.38	-3.7
1,015,371	-		PFR28_00932	0.38	-0.2
1,015,371	-		PFR28_00932	0.38	-0.4
1,015,371	-		PFR28_00932	0.38	-2.6
1,015,371	-		PFR28_00932	0.38	-1.2
1,015,371	-		PFR28_00932	0.38	+0.7
1,015,371	-		PFR28_00932	0.38	-2.0
1,015,371	-		PFR28_00932	0.38	-1.3
1,015,371	-		PFR28_00932	0.38	-0.9
1,015,371	-		PFR28_00932	0.38	+0.1
1,015,500	+		PFR28_00932	0.44	+0.1
1,015,500	+		PFR28_00932	0.44	-2.0
1,015,500	+		PFR28_00932	0.44	-0.8
1,015,500	+		PFR28_00932	0.44	-4.1
1,015,500	+		PFR28_00932	0.44	-0.2
1,015,500	+		PFR28_00932	0.44	-0.3
1,015,500	+		PFR28_00932	0.44	-0.2
1,015,500	+		PFR28_00932	0.44	-0.3
1,015,501	-		PFR28_00932	0.44	-0.4
1,015,501	-		PFR28_00932	0.44	-1.5
1,015,501	-		PFR28_00932	0.44	-1.5
1,015,501	-		PFR28_00932	0.44	-3.0
1,015,501	-		PFR28_00932	0.44	-1.4
1,015,501	-		PFR28_00932	0.44	-0.8
1,015,501	-		PFR28_00932	0.44	-0.4
1,015,501	-		PFR28_00932	0.44	-0.1
1,015,501	-		PFR28_00932	0.44	-2.1
1,015,503	+		PFR28_00932	0.44	+0.8
1,015,503	+		PFR28_00932	0.44	-1.2
1,015,592	+		PFR28_00932	0.49	-1.8
1,015,593	-		PFR28_00932	0.49	-2.1
1,015,593	-		PFR28_00932	0.49	-1.7
1,015,593	-		PFR28_00932	0.49	-1.1
1,015,600	+		PFR28_00932	0.49	-1.4
1,015,600	+		PFR28_00932	0.49	+0.6
1,015,600	+		PFR28_00932	0.49	-1.1
1,015,601	-		PFR28_00932	0.49	-0.4
1,015,601	-		PFR28_00932	0.49	+1.3
1,015,601	-		PFR28_00932	0.49	-0.5
1,015,608	+		PFR28_00932	0.50	-0.8
1,015,624	+		PFR28_00932	0.50	-2.1
1,015,624	+		PFR28_00932	0.50	-2.2
1,015,624	+		PFR28_00932	0.50	-1.2
1,015,624	+		PFR28_00932	0.50	-0.6
1,015,624	+		PFR28_00932	0.50	-2.7
1,015,624	+		PFR28_00932	0.50	-0.5
1,015,624	+		PFR28_00932	0.50	-2.1
1,015,625	-		PFR28_00932	0.50	-2.0
1,015,625	-		PFR28_00932	0.50	-3.5
1,015,629	+		PFR28_00932	0.51	+0.3
1,015,629	+		PFR28_00932	0.51	-0.2
1,015,629	+		PFR28_00932	0.51	-1.0
1,015,629	+		PFR28_00932	0.51	-3.2
1,015,629	+		PFR28_00932	0.51	-0.6
1,015,630	-		PFR28_00932	0.51	-0.1
1,015,630	-		PFR28_00932	0.51	-0.0
1,015,630	-		PFR28_00932	0.51	-1.2
1,015,671	-		PFR28_00932	0.53	-0.5
1,015,686	-		PFR28_00932	0.53	-3.6
1,015,752	+		PFR28_00932	0.57	-3.0
1,015,760	-		PFR28_00932	0.57	+0.4
1,015,774	+		PFR28_00932	0.58	-0.0
1,015,774	+		PFR28_00932	0.58	-0.2
1,015,775	-		PFR28_00932	0.58	-1.9
1,015,775	-		PFR28_00932	0.58	-2.7
1,015,776	+		PFR28_00932	0.58	-0.0
1,015,776	+		PFR28_00932	0.58	-1.0
1,015,776	+		PFR28_00932	0.58	+0.3
1,015,776	+		PFR28_00932	0.58	-3.3
1,015,776	+		PFR28_00932	0.58	-1.2
1,015,776	+		PFR28_00932	0.58	-0.0
1,015,776	+		PFR28_00932	0.58	+0.8
1,015,777	-		PFR28_00932	0.58	+0.0
1,015,777	-		PFR28_00932	0.58	-0.2
1,015,777	-		PFR28_00932	0.58	-0.4
1,015,777	-		PFR28_00932	0.58	-0.5
1,015,777	-		PFR28_00932	0.58	-0.7
1,015,777	-		PFR28_00932	0.58	-1.4
1,015,777	-		PFR28_00932	0.58	-0.1
1,015,777	-		PFR28_00932	0.58	-1.4
1,015,777	-		PFR28_00932	0.58	-0.6
1,015,777	-		PFR28_00932	0.58	-0.0
1,015,777	-		PFR28_00932	0.58	-2.3
1,015,837	-		PFR28_00932	0.61	-3.7
1,015,842	+		PFR28_00932	0.61	-0.6
1,015,842	+		PFR28_00932	0.61	-1.9
1,015,842	+		PFR28_00932	0.61	-1.9
1,015,843	-		PFR28_00932	0.61	-2.6
1,015,843	-		PFR28_00932	0.61	-1.5
1,015,843	-		PFR28_00932	0.61	-1.9
1,015,843	-		PFR28_00932	0.61	-0.3
1,015,843	-		PFR28_00932	0.61	-1.4
1,015,843	-		PFR28_00932	0.61	-1.6
1,015,845	+		PFR28_00932	0.61	-1.2
1,015,845	+		PFR28_00932	0.61	-0.8
1,015,874	+		PFR28_00932	0.63	-2.0
1,015,887	-		PFR28_00932	0.64	-0.6
1,015,910	+		PFR28_00932	0.65	-2.4
1,015,932	+		PFR28_00932	0.66	-3.4
1,015,932	+		PFR28_00932	0.66	-1.5
1,015,932	+		PFR28_00932	0.66	-0.2
1,015,935	+		PFR28_00932	0.66	-0.8
1,015,935	+		PFR28_00932	0.66	-2.4
1,015,936	-		PFR28_00932	0.66	-1.0
1,016,026	-		PFR28_00932	0.71	-0.8
1,016,026	-		PFR28_00932	0.71	-0.9
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1,016,029	-		PFR28_00932	0.71	-2.7
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1,016,063	+		PFR28_00932	0.72	+0.1
1,016,063	+		PFR28_00932	0.72	-3.2
1,016,063	+		PFR28_00932	0.72	-1.2
1,016,063	+		PFR28_00932	0.72	-4.5
1,016,064	-		PFR28_00932	0.72	-0.6
1,016,064	-		PFR28_00932	0.72	-2.9
1,016,064	-		PFR28_00932	0.72	+0.9
1,016,100	+		PFR28_00932	0.74	-1.0
1,016,101	-		PFR28_00932	0.74	-2.5
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1,016,156	-		PFR28_00932	0.77	+0.3
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1,016,336	-		PFR28_00932	0.86	-1.4
1,016,375	-		PFR28_00932	0.88	-2.1
1,016,375	-		PFR28_00932	0.88	-2.1
1,016,390	+		PFR28_00932	0.89	-2.8
1,016,390	+		PFR28_00932	0.89	-4.0
1,016,390	+		PFR28_00932	0.89	+1.3
1,016,390	+		PFR28_00932	0.89	-1.5
1,016,391	-		PFR28_00932	0.89	-3.9
1,016,391	-		PFR28_00932	0.89	+0.3
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1,016,391	-		PFR28_00932	0.89	-0.4
1,016,391	-		PFR28_00932	0.89	-3.0
1,016,446	+				-3.2
1,016,446	+				+0.0
1,016,447	-				-1.5
1,016,447	-				-0.8
1,016,447	-				-1.8
1,016,447	-				+0.2
1,016,447	-				-1.2
1,016,447	-				-2.2
1,016,447	-				-1.0
1,016,512	+				-2.0
1,016,512	+				+1.1
1,016,512	+				-2.4
1,016,512	+				-1.3
1,016,512	+				+0.6
1,016,512	+				-1.0
1,016,512	+				+0.6
1,016,512	+				-0.7
1,016,512	+				-3.0
1,016,512	+				-0.6
1,016,513	-				-1.3
1,016,513	-				-1.2
1,016,513	-				-0.6
1,016,513	-				-1.3
1,016,513	-				-3.5
1,016,513	-				-4.0
1,016,587	+				+0.0
1,016,587	+				-0.8
1,016,588	-				+0.0
1,016,665	+				-1.3
1,016,704	+				-2.1
1,016,704	+				+0.1
1,016,705	-				-0.7
1,016,728	-				-3.0
1,016,728	-				+0.1
1,016,733	+				-2.1
1,016,733	+				-1.4
1,016,734	-				-0.3
1,016,734	-				+1.2
1,016,740	+				+0.4
1,016,741	-				+0.0
1,016,782	-		PFR28_00933	0.16	-0.2
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1,017,071	+				+1.8
1,017,071	+				+0.0
1,017,072	-				+2.1
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1,017,089	+				-0.9
1,017,089	+				-0.1
1,017,089	+				-2.7
1,017,089	+				-1.7
1,017,089	+				+1.6
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1,017,089	+				-1.2
1,017,089	+				-0.1
1,017,090	-				+0.9
1,017,090	-				+0.4
1,017,090	-				-1.2
1,017,090	-				+0.2
1,017,132	+				-1.0
1,017,132	+				+0.8
1,017,132	+				-2.4
1,017,132	+				+0.1
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1,017,132	+				-1.2
1,017,133	-				-0.2
1,017,133	-				-0.3
1,017,133	-				-0.9
1,017,133	-				+1.7
1,017,182	+				+1.6
1,017,225	+				-2.7
1,017,341	-		PFR28_00934	0.18	+1.2
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1,017,357	+		PFR28_00934	0.20	-1.2
1,017,406	+		PFR28_00934	0.28	-0.6
1,017,407	-		PFR28_00934	0.28	-0.7
1,017,526	+		PFR28_00934	0.46	-0.0