Experiment: Cytidine carbon 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00916 and PFR28_00917 are separated by 89 nucleotides PFR28_00917 and PFR28_00918 are separated by 79 nucleotides
PFR28_00916: PFR28_00916 - UDP-N-acetylglucosamine 2-epimerase, at 997,381 to 998,502
_00916
PFR28_00917: PFR28_00917 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 998,592 to 999,863
_00917
PFR28_00918: PFR28_00918 - UDP-N-acetylglucosamine 4,6-dehydratase (inverting), at 999,943 to 1,000,941
_00918
Position (kb) 998
999
1000 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 997.635 kb on + strand, within PFR28_00916 at 997.649 kb on + strand, within PFR28_00916 at 997.699 kb on + strand, within PFR28_00916 at 997.699 kb on + strand, within PFR28_00916 at 997.700 kb on - strand, within PFR28_00916 at 997.700 kb on - strand, within PFR28_00916 at 997.700 kb on - strand, within PFR28_00916 at 997.700 kb on - strand, within PFR28_00916 at 997.702 kb on + strand, within PFR28_00916 at 997.702 kb on + strand, within PFR28_00916 at 997.702 kb on + strand, within PFR28_00916 at 997.703 kb on - strand, within PFR28_00916 at 997.727 kb on + strand, within PFR28_00916 at 997.727 kb on + strand, within PFR28_00916 at 997.727 kb on + strand, within PFR28_00916 at 997.727 kb on + strand, within PFR28_00916 at 997.727 kb on + strand, within PFR28_00916 at 997.727 kb on + strand, within PFR28_00916 at 997.728 kb on - strand, within PFR28_00916 at 997.752 kb on + strand, within PFR28_00916 at 997.752 kb on + strand, within PFR28_00916 at 997.752 kb on + strand, within PFR28_00916 at 997.752 kb on + strand, within PFR28_00916 at 997.753 kb on - strand, within PFR28_00916 at 997.753 kb on - strand, within PFR28_00916 at 997.756 kb on + strand, within PFR28_00916 at 997.824 kb on + strand, within PFR28_00916 at 997.824 kb on + strand, within PFR28_00916 at 997.824 kb on + strand, within PFR28_00916 at 997.878 kb on - strand, within PFR28_00916 at 997.893 kb on + strand, within PFR28_00916 at 997.893 kb on + strand, within PFR28_00916 at 997.893 kb on + strand, within PFR28_00916 at 997.893 kb on + strand, within PFR28_00916 at 997.893 kb on + strand, within PFR28_00916 at 997.893 kb on + strand, within PFR28_00916 at 997.894 kb on - strand, within PFR28_00916 at 997.959 kb on - strand, within PFR28_00916 at 998.096 kb on + strand, within PFR28_00916 at 998.096 kb on + strand, within PFR28_00916 at 998.097 kb on - strand, within PFR28_00916 at 998.097 kb on - strand, within PFR28_00916 at 998.169 kb on + strand, within PFR28_00916 at 998.169 kb on + strand, within PFR28_00916 at 998.169 kb on + strand, within PFR28_00916 at 998.169 kb on + strand, within PFR28_00916 at 998.169 kb on + strand, within PFR28_00916 at 998.170 kb on - strand, within PFR28_00916 at 998.170 kb on - strand, within PFR28_00916 at 998.170 kb on - strand, within PFR28_00916 at 998.198 kb on - strand, within PFR28_00916 at 998.232 kb on + strand, within PFR28_00916 at 998.232 kb on + strand, within PFR28_00916 at 998.233 kb on - strand, within PFR28_00916 at 998.233 kb on - strand, within PFR28_00916 at 998.233 kb on - strand, within PFR28_00916 at 998.234 kb on + strand, within PFR28_00916 at 998.234 kb on + strand, within PFR28_00916 at 998.234 kb on + strand, within PFR28_00916 at 998.234 kb on + strand, within PFR28_00916 at 998.234 kb on + strand, within PFR28_00916 at 998.234 kb on + strand, within PFR28_00916 at 998.234 kb on + strand, within PFR28_00916 at 998.234 kb on + strand, within PFR28_00916 at 998.235 kb on - strand, within PFR28_00916 at 998.235 kb on - strand, within PFR28_00916 at 998.235 kb on - strand, within PFR28_00916 at 998.235 kb on - strand, within PFR28_00916 at 998.235 kb on - strand, within PFR28_00916 at 998.235 kb on - strand, within PFR28_00916 at 998.235 kb on - strand, within PFR28_00916 at 998.331 kb on - strand, within PFR28_00916 at 998.331 kb on - strand, within PFR28_00916 at 998.346 kb on + strand, within PFR28_00916 at 998.346 kb on + strand, within PFR28_00916 at 998.390 kb on - strand at 998.399 kb on + strand at 998.399 kb on + strand at 998.400 kb on - strand at 998.431 kb on + strand at 998.431 kb on + strand at 998.439 kb on + strand at 998.439 kb on + strand at 998.439 kb on + strand at 998.572 kb on + strand at 998.618 kb on - strand at 998.630 kb on + strand at 998.711 kb on + strand at 998.711 kb on + strand at 998.712 kb on - strand at 998.712 kb on - strand at 998.712 kb on - strand at 998.735 kb on + strand, within PFR28_00917 at 998.736 kb on - strand, within PFR28_00917 at 998.752 kb on + strand, within PFR28_00917 at 998.753 kb on - strand, within PFR28_00917 at 998.788 kb on - strand, within PFR28_00917 at 998.788 kb on - strand, within PFR28_00917 at 998.788 kb on - strand, within PFR28_00917 at 998.880 kb on + strand, within PFR28_00917 at 998.880 kb on + strand, within PFR28_00917 at 998.881 kb on - strand, within PFR28_00917 at 998.881 kb on - strand, within PFR28_00917 at 998.881 kb on - strand, within PFR28_00917 at 998.881 kb on - strand, within PFR28_00917 at 998.884 kb on + strand, within PFR28_00917 at 998.884 kb on + strand, within PFR28_00917 at 998.884 kb on + strand, within PFR28_00917 at 998.884 kb on + strand, within PFR28_00917 at 998.885 kb on - strand, within PFR28_00917 at 998.885 kb on - strand, within PFR28_00917 at 998.885 kb on - strand, within PFR28_00917 at 998.885 kb on - strand, within PFR28_00917 at 998.885 kb on - strand, within PFR28_00917 at 998.903 kb on + strand, within PFR28_00917 at 998.935 kb on + strand, within PFR28_00917 at 998.936 kb on - strand, within PFR28_00917 at 998.941 kb on + strand, within PFR28_00917 at 998.941 kb on + strand, within PFR28_00917 at 998.942 kb on - strand, within PFR28_00917 at 999.119 kb on - strand, within PFR28_00917 at 999.165 kb on + strand, within PFR28_00917 at 999.165 kb on + strand, within PFR28_00917 at 999.165 kb on + strand, within PFR28_00917 at 999.165 kb on + strand, within PFR28_00917 at 999.165 kb on + strand, within PFR28_00917 at 999.165 kb on + strand, within PFR28_00917 at 999.165 kb on + strand, within PFR28_00917 at 999.165 kb on + strand, within PFR28_00917 at 999.165 kb on + strand, within PFR28_00917 at 999.167 kb on + strand, within PFR28_00917 at 999.167 kb on + strand, within PFR28_00917 at 999.167 kb on + strand, within PFR28_00917 at 999.167 kb on + strand, within PFR28_00917 at 999.167 kb on + strand, within PFR28_00917 at 999.168 kb on - strand, within PFR28_00917 at 999.168 kb on - strand, within PFR28_00917 at 999.168 kb on - strand, within PFR28_00917 at 999.178 kb on + strand, within PFR28_00917 at 999.178 kb on + strand, within PFR28_00917 at 999.179 kb on - strand, within PFR28_00917 at 999.198 kb on - strand, within PFR28_00917 at 999.198 kb on - strand, within PFR28_00917 at 999.278 kb on - strand, within PFR28_00917 at 999.299 kb on - strand, within PFR28_00917 at 999.390 kb on - strand, within PFR28_00917 at 999.390 kb on - strand, within PFR28_00917 at 999.390 kb on - strand, within PFR28_00917 at 999.390 kb on - strand, within PFR28_00917 at 999.390 kb on - strand, within PFR28_00917 at 999.390 kb on - strand, within PFR28_00917 at 999.411 kb on - strand, within PFR28_00917 at 999.474 kb on - strand, within PFR28_00917 at 999.474 kb on - strand, within PFR28_00917 at 999.560 kb on + strand, within PFR28_00917 at 999.684 kb on - strand, within PFR28_00917 at 999.794 kb on + strand at 999.795 kb on - strand at 999.961 kb on - strand at 1000.119 kb on + strand, within PFR28_00918 at 1000.174 kb on + strand, within PFR28_00918 at 1000.175 kb on - strand, within PFR28_00918 at 1000.175 kb on - strand, within PFR28_00918 at 1000.175 kb on - strand, within PFR28_00918 at 1000.220 kb on - strand, within PFR28_00918 at 1000.261 kb on - strand, within PFR28_00918 at 1000.287 kb on + strand, within PFR28_00918 at 1000.317 kb on + strand, within PFR28_00918 at 1000.317 kb on + strand, within PFR28_00918 at 1000.317 kb on + strand, within PFR28_00918 at 1000.347 kb on - strand, within PFR28_00918 at 1000.347 kb on - strand, within PFR28_00918 at 1000.349 kb on - strand, within PFR28_00918 at 1000.379 kb on + strand, within PFR28_00918 at 1000.380 kb on - strand, within PFR28_00918 at 1000.380 kb on - strand, within PFR28_00918 at 1000.380 kb on - strand, within PFR28_00918 at 1000.380 kb on - strand, within PFR28_00918 at 1000.399 kb on + strand, within PFR28_00918 at 1000.400 kb on - strand, within PFR28_00918 at 1000.400 kb on - strand, within PFR28_00918 at 1000.400 kb on - strand, within PFR28_00918 at 1000.449 kb on - strand, within PFR28_00918 at 1000.527 kb on + strand, within PFR28_00918 at 1000.528 kb on - strand, within PFR28_00918 at 1000.591 kb on - strand, within PFR28_00918 at 1000.591 kb on - strand, within PFR28_00918 at 1000.608 kb on - strand, within PFR28_00918 at 1000.608 kb on - strand, within PFR28_00918 at 1000.608 kb on - strand, within PFR28_00918 at 1000.608 kb on - strand, within PFR28_00918 at 1000.610 kb on - strand, within PFR28_00918 at 1000.610 kb on - strand, within PFR28_00918 at 1000.610 kb on - strand, within PFR28_00918 at 1000.610 kb on - strand, within PFR28_00918 at 1000.610 kb on - strand, within PFR28_00918 at 1000.610 kb on - strand, within PFR28_00918 at 1000.610 kb on - strand, within PFR28_00918 at 1000.610 kb on - strand, within PFR28_00918 at 1000.610 kb on - strand, within PFR28_00918 at 1000.613 kb on + strand, within PFR28_00918 at 1000.613 kb on + strand, within PFR28_00918 at 1000.614 kb on - strand, within PFR28_00918 at 1000.614 kb on - strand, within PFR28_00918 at 1000.614 kb on - strand, within PFR28_00918 at 1000.614 kb on - strand, within PFR28_00918 at 1000.671 kb on + strand, within PFR28_00918 at 1000.672 kb on - strand, within PFR28_00918 at 1000.744 kb on + strand, within PFR28_00918 at 1000.744 kb on + strand, within PFR28_00918 at 1000.745 kb on - strand, within PFR28_00918 at 1000.745 kb on - strand, within PFR28_00918 at 1000.750 kb on + strand, within PFR28_00918 at 1000.750 kb on + strand, within PFR28_00918 at 1000.750 kb on + strand, within PFR28_00918 at 1000.751 kb on - strand, within PFR28_00918 at 1000.751 kb on - strand, within PFR28_00918 at 1000.751 kb on - strand, within PFR28_00918 at 1000.751 kb on - strand, within PFR28_00918 at 1000.751 kb on - strand, within PFR28_00918 at 1000.751 kb on - strand, within PFR28_00918 at 1000.769 kb on - strand, within PFR28_00918
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine carbon 10 mM remove 997,635 + PFR28_00916 0.23 -0.4 997,649 + PFR28_00916 0.24 -1.4 997,699 + PFR28_00916 0.28 +0.6 997,699 + PFR28_00916 0.28 +0.1 997,700 - PFR28_00916 0.28 -4.4 997,700 - PFR28_00916 0.28 -1.5 997,700 - PFR28_00916 0.28 +0.0 997,700 - PFR28_00916 0.28 -1.8 997,702 + PFR28_00916 0.29 -1.6 997,702 + PFR28_00916 0.29 +0.1 997,702 + PFR28_00916 0.29 -0.9 997,703 - PFR28_00916 0.29 +0.6 997,727 + PFR28_00916 0.31 -0.6 997,727 + PFR28_00916 0.31 -0.0 997,727 + PFR28_00916 0.31 -3.6 997,727 + PFR28_00916 0.31 +1.2 997,727 + PFR28_00916 0.31 +0.8 997,727 + PFR28_00916 0.31 -2.2 997,728 - PFR28_00916 0.31 -1.7 997,752 + PFR28_00916 0.33 -0.1 997,752 + PFR28_00916 0.33 -0.9 997,752 + PFR28_00916 0.33 -3.4 997,752 + PFR28_00916 0.33 -0.8 997,753 - PFR28_00916 0.33 +0.3 997,753 - PFR28_00916 0.33 -1.1 997,756 + PFR28_00916 0.33 -0.9 997,824 + PFR28_00916 0.39 -2.5 997,824 + PFR28_00916 0.39 -3.2 997,824 + PFR28_00916 0.39 +0.1 997,878 - PFR28_00916 0.44 +1.2 997,893 + PFR28_00916 0.46 -0.9 997,893 + PFR28_00916 0.46 -1.4 997,893 + PFR28_00916 0.46 -2.2 997,893 + PFR28_00916 0.46 -0.8 997,893 + PFR28_00916 0.46 -3.5 997,893 + PFR28_00916 0.46 -1.4 997,894 - PFR28_00916 0.46 +1.1 997,959 - PFR28_00916 0.52 -0.8 998,096 + PFR28_00916 0.64 -1.3 998,096 + PFR28_00916 0.64 -1.8 998,097 - PFR28_00916 0.64 -0.7 998,097 - PFR28_00916 0.64 -1.3 998,169 + PFR28_00916 0.70 -1.3 998,169 + PFR28_00916 0.70 -0.9 998,169 + PFR28_00916 0.70 -0.4 998,169 + PFR28_00916 0.70 +0.3 998,169 + PFR28_00916 0.70 -0.4 998,170 - PFR28_00916 0.70 -1.2 998,170 - PFR28_00916 0.70 -0.4 998,170 - PFR28_00916 0.70 -0.5 998,198 - PFR28_00916 0.73 -1.2 998,232 + PFR28_00916 0.76 +0.5 998,232 + PFR28_00916 0.76 -1.4 998,233 - PFR28_00916 0.76 -1.9 998,233 - PFR28_00916 0.76 -1.1 998,233 - PFR28_00916 0.76 -2.3 998,234 + PFR28_00916 0.76 +0.9 998,234 + PFR28_00916 0.76 +0.1 998,234 + PFR28_00916 0.76 -3.4 998,234 + PFR28_00916 0.76 -0.7 998,234 + PFR28_00916 0.76 -1.5 998,234 + PFR28_00916 0.76 -0.0 998,234 + PFR28_00916 0.76 -0.3 998,234 + PFR28_00916 0.76 -2.5 998,235 - PFR28_00916 0.76 -2.9 998,235 - PFR28_00916 0.76 -1.6 998,235 - PFR28_00916 0.76 -1.2 998,235 - PFR28_00916 0.76 -1.1 998,235 - PFR28_00916 0.76 -0.9 998,235 - PFR28_00916 0.76 -0.2 998,235 - PFR28_00916 0.76 -0.0 998,331 - PFR28_00916 0.85 -2.8 998,331 - PFR28_00916 0.85 -0.3 998,346 + PFR28_00916 0.86 +0.4 998,346 + PFR28_00916 0.86 -3.0 998,390 - +0.0 998,399 + -1.5 998,399 + -0.4 998,400 - -2.9 998,431 + -0.1 998,431 + +0.6 998,439 + -0.2 998,439 + -0.4 998,439 + -1.7 998,572 + +0.6 998,618 - -0.6 998,630 + -2.1 998,711 + -1.1 998,711 + -4.5 998,712 - -0.4 998,712 - -1.8 998,712 - +0.6 998,735 + PFR28_00917 0.11 -1.7 998,736 - PFR28_00917 0.11 +0.1 998,752 + PFR28_00917 0.13 -3.9 998,753 - PFR28_00917 0.13 -0.8 998,788 - PFR28_00917 0.15 -0.2 998,788 - PFR28_00917 0.15 +0.3 998,788 - PFR28_00917 0.15 -0.7 998,880 + PFR28_00917 0.23 -2.0 998,880 + PFR28_00917 0.23 -3.7 998,881 - PFR28_00917 0.23 -2.1 998,881 - PFR28_00917 0.23 -1.7 998,881 - PFR28_00917 0.23 -0.8 998,881 - PFR28_00917 0.23 +1.1 998,884 + PFR28_00917 0.23 -0.6 998,884 + PFR28_00917 0.23 -0.2 998,884 + PFR28_00917 0.23 -1.3 998,884 + PFR28_00917 0.23 -1.2 998,885 - PFR28_00917 0.23 -1.6 998,885 - PFR28_00917 0.23 -0.9 998,885 - PFR28_00917 0.23 -1.2 998,885 - PFR28_00917 0.23 -1.6 998,885 - PFR28_00917 0.23 -1.2 998,903 + PFR28_00917 0.24 -1.7 998,935 + PFR28_00917 0.27 -1.9 998,936 - PFR28_00917 0.27 -2.8 998,941 + PFR28_00917 0.27 -3.3 998,941 + PFR28_00917 0.27 +0.9 998,942 - PFR28_00917 0.28 -1.8 999,119 - PFR28_00917 0.41 -3.1 999,165 + PFR28_00917 0.45 -2.2 999,165 + PFR28_00917 0.45 +0.4 999,165 + PFR28_00917 0.45 +0.1 999,165 + PFR28_00917 0.45 -1.4 999,165 + PFR28_00917 0.45 -0.5 999,165 + PFR28_00917 0.45 -0.8 999,165 + PFR28_00917 0.45 -0.8 999,165 + PFR28_00917 0.45 +0.4 999,165 + PFR28_00917 0.45 -1.8 999,167 + PFR28_00917 0.45 -0.8 999,167 + PFR28_00917 0.45 -0.4 999,167 + PFR28_00917 0.45 -1.2 999,167 + PFR28_00917 0.45 -3.6 999,167 + PFR28_00917 0.45 -1.0 999,168 - PFR28_00917 0.45 -0.8 999,168 - PFR28_00917 0.45 -0.4 999,168 - PFR28_00917 0.45 -1.7 999,178 + PFR28_00917 0.46 -2.8 999,178 + PFR28_00917 0.46 -1.4 999,179 - PFR28_00917 0.46 -0.7 999,198 - PFR28_00917 0.48 -0.7 999,198 - PFR28_00917 0.48 -1.1 999,278 - PFR28_00917 0.54 -0.2 999,299 - PFR28_00917 0.56 -1.5 999,390 - PFR28_00917 0.63 +0.4 999,390 - PFR28_00917 0.63 -0.6 999,390 - PFR28_00917 0.63 +1.1 999,390 - PFR28_00917 0.63 -0.9 999,390 - PFR28_00917 0.63 -1.1 999,390 - PFR28_00917 0.63 -0.5 999,411 - PFR28_00917 0.64 -1.7 999,474 - PFR28_00917 0.69 -1.4 999,474 - PFR28_00917 0.69 -2.3 999,560 + PFR28_00917 0.76 -2.4 999,684 - PFR28_00917 0.86 -3.0 999,794 + -0.5 999,795 - +0.2 999,961 - -2.2 1,000,119 + PFR28_00918 0.18 +0.6 1,000,174 + PFR28_00918 0.23 -2.7 1,000,175 - PFR28_00918 0.23 +0.1 1,000,175 - PFR28_00918 0.23 -2.9 1,000,175 - PFR28_00918 0.23 -1.2 1,000,220 - PFR28_00918 0.28 -1.8 1,000,261 - PFR28_00918 0.32 -0.5 1,000,287 + PFR28_00918 0.34 -1.9 1,000,317 + PFR28_00918 0.37 -0.4 1,000,317 + PFR28_00918 0.37 -1.8 1,000,317 + PFR28_00918 0.37 -0.9 1,000,347 - PFR28_00918 0.40 -0.7 1,000,347 - PFR28_00918 0.40 -0.7 1,000,349 - PFR28_00918 0.41 -1.7 1,000,379 + PFR28_00918 0.44 -1.2 1,000,380 - PFR28_00918 0.44 -1.2 1,000,380 - PFR28_00918 0.44 -0.7 1,000,380 - PFR28_00918 0.44 -0.9 1,000,380 - PFR28_00918 0.44 -0.7 1,000,399 + PFR28_00918 0.46 -0.6 1,000,400 - PFR28_00918 0.46 +2.1 1,000,400 - PFR28_00918 0.46 -0.4 1,000,400 - PFR28_00918 0.46 -0.7 1,000,449 - PFR28_00918 0.51 +0.1 1,000,527 + PFR28_00918 0.58 -0.9 1,000,528 - PFR28_00918 0.59 +0.4 1,000,591 - PFR28_00918 0.65 -0.9 1,000,591 - PFR28_00918 0.65 +0.2 1,000,608 - PFR28_00918 0.67 -1.3 1,000,608 - PFR28_00918 0.67 -0.9 1,000,608 - PFR28_00918 0.67 -0.4 1,000,608 - PFR28_00918 0.67 -0.9 1,000,610 - PFR28_00918 0.67 -0.4 1,000,610 - PFR28_00918 0.67 -0.7 1,000,610 - PFR28_00918 0.67 -1.4 1,000,610 - PFR28_00918 0.67 -0.3 1,000,610 - PFR28_00918 0.67 +1.6 1,000,610 - PFR28_00918 0.67 -1.4 1,000,610 - PFR28_00918 0.67 +0.6 1,000,610 - PFR28_00918 0.67 -2.6 1,000,610 - PFR28_00918 0.67 +1.3 1,000,613 + PFR28_00918 0.67 -0.9 1,000,613 + PFR28_00918 0.67 -0.2 1,000,614 - PFR28_00918 0.67 -1.2 1,000,614 - PFR28_00918 0.67 +0.6 1,000,614 - PFR28_00918 0.67 -1.7 1,000,614 - PFR28_00918 0.67 -2.1 1,000,671 + PFR28_00918 0.73 -1.2 1,000,672 - PFR28_00918 0.73 +0.4 1,000,744 + PFR28_00918 0.80 -1.2 1,000,744 + PFR28_00918 0.80 -1.5 1,000,745 - PFR28_00918 0.80 -1.4 1,000,745 - PFR28_00918 0.80 -0.5 1,000,750 + PFR28_00918 0.81 -1.9 1,000,750 + PFR28_00918 0.81 -1.5 1,000,750 + PFR28_00918 0.81 +2.3 1,000,751 - PFR28_00918 0.81 -1.5 1,000,751 - PFR28_00918 0.81 -0.2 1,000,751 - PFR28_00918 0.81 -2.3 1,000,751 - PFR28_00918 0.81 +0.1 1,000,751 - PFR28_00918 0.81 -0.2 1,000,751 - PFR28_00918 0.81 -1.7 1,000,769 - PFR28_00918 0.83 +1.3
Or see this region's nucleotide sequence