Strain Fitness in Pseudomonas sp. RS175 around PFR28_00729

Experiment: Cytidine carbon 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00727 and PFR28_00728 are separated by 54 nucleotidesPFR28_00728 and PFR28_00729 overlap by 4 nucleotidesPFR28_00729 and PFR28_00730 overlap by 4 nucleotides PFR28_00727: PFR28_00727 - Putative metabolite transport protein YjhB, at 765,718 to 767,004 _00727 PFR28_00728: PFR28_00728 - 5-oxoprolinase subunit A 3, at 767,059 to 767,811 _00728 PFR28_00729: PFR28_00729 - 5-oxoprolinase subunit B, at 767,808 to 768,512 _00729 PFR28_00730: PFR28_00730 - 5-oxoprolinase subunit C, at 768,509 to 769,429 _00730 Position (kb) 767 768 769Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 766.831 kb on + strand, within PFR28_00727at 766.832 kb on - strand, within PFR28_00727at 766.832 kb on - strand, within PFR28_00727at 766.850 kb on + strand, within PFR28_00727at 766.937 kb on - strandat 767.002 kb on + strandat 767.003 kb on - strandat 767.003 kb on - strandat 767.009 kb on + strandat 767.010 kb on - strandat 767.045 kb on - strandat 767.254 kb on + strand, within PFR28_00728at 767.293 kb on + strand, within PFR28_00728at 767.294 kb on - strand, within PFR28_00728at 767.294 kb on - strand, within PFR28_00728at 767.294 kb on - strand, within PFR28_00728at 767.326 kb on + strand, within PFR28_00728at 767.349 kb on + strand, within PFR28_00728at 767.349 kb on + strand, within PFR28_00728at 767.349 kb on + strand, within PFR28_00728at 767.349 kb on + strand, within PFR28_00728at 767.350 kb on - strand, within PFR28_00728at 767.350 kb on - strand, within PFR28_00728at 767.350 kb on - strand, within PFR28_00728at 767.380 kb on + strand, within PFR28_00728at 767.380 kb on + strand, within PFR28_00728at 767.380 kb on + strand, within PFR28_00728at 767.380 kb on + strand, within PFR28_00728at 767.380 kb on + strand, within PFR28_00728at 767.381 kb on - strand, within PFR28_00728at 767.404 kb on + strand, within PFR28_00728at 767.404 kb on + strand, within PFR28_00728at 767.404 kb on + strand, within PFR28_00728at 767.404 kb on + strand, within PFR28_00728at 767.404 kb on + strand, within PFR28_00728at 767.405 kb on - strand, within PFR28_00728at 767.405 kb on - strand, within PFR28_00728at 767.405 kb on - strand, within PFR28_00728at 767.405 kb on - strand, within PFR28_00728at 767.464 kb on + strand, within PFR28_00728at 767.465 kb on - strand, within PFR28_00728at 767.536 kb on + strand, within PFR28_00728at 767.537 kb on - strand, within PFR28_00728at 767.537 kb on - strand, within PFR28_00728at 767.579 kb on - strand, within PFR28_00728at 767.579 kb on - strand, within PFR28_00728at 767.958 kb on + strand, within PFR28_00729at 767.958 kb on + strand, within PFR28_00729at 767.958 kb on + strand, within PFR28_00729at 767.958 kb on + strand, within PFR28_00729at 767.959 kb on - strand, within PFR28_00729at 767.959 kb on - strand, within PFR28_00729at 767.979 kb on + strand, within PFR28_00729at 767.980 kb on - strand, within PFR28_00729at 767.980 kb on - strand, within PFR28_00729at 767.980 kb on - strand, within PFR28_00729at 767.980 kb on - strand, within PFR28_00729at 768.079 kb on + strand, within PFR28_00729at 768.079 kb on + strand, within PFR28_00729at 768.079 kb on + strand, within PFR28_00729at 768.079 kb on + strand, within PFR28_00729at 768.079 kb on + strand, within PFR28_00729at 768.079 kb on + strand, within PFR28_00729at 768.079 kb on + strand, within PFR28_00729at 768.079 kb on + strand, within PFR28_00729at 768.079 kb on + strand, within PFR28_00729at 768.079 kb on + strand, within PFR28_00729at 768.079 kb on + strand, within PFR28_00729at 768.080 kb on - strand, within PFR28_00729at 768.080 kb on - strand, within PFR28_00729at 768.080 kb on - strand, within PFR28_00729at 768.080 kb on - strand, within PFR28_00729at 768.080 kb on - strand, within PFR28_00729at 768.080 kb on - strand, within PFR28_00729at 768.080 kb on - strand, within PFR28_00729at 768.080 kb on - strand, within PFR28_00729at 768.080 kb on - strand, within PFR28_00729at 768.186 kb on + strand, within PFR28_00729at 768.187 kb on - strand, within PFR28_00729at 768.187 kb on - strand, within PFR28_00729at 768.247 kb on + strand, within PFR28_00729at 768.248 kb on - strand, within PFR28_00729at 768.248 kb on - strand, within PFR28_00729at 768.270 kb on - strand, within PFR28_00729at 768.785 kb on + strand, within PFR28_00730at 768.975 kb on - strand, within PFR28_00730at 768.975 kb on - strand, within PFR28_00730at 768.975 kb on - strand, within PFR28_00730at 769.175 kb on + strand, within PFR28_00730at 769.353 kb on + strandat 769.427 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine carbon 10 mM
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766,831 + PFR28_00727 0.86 -0.0
766,832 - PFR28_00727 0.87 +0.6
766,832 - PFR28_00727 0.87 +2.2
766,850 + PFR28_00727 0.88 +0.3
766,937 - +1.0
767,002 + +0.9
767,003 - -1.9
767,003 - +0.1
767,009 + -0.3
767,010 - +0.2
767,045 - -0.3
767,254 + PFR28_00728 0.26 -1.4
767,293 + PFR28_00728 0.31 -0.1
767,294 - PFR28_00728 0.31 -2.2
767,294 - PFR28_00728 0.31 -1.0
767,294 - PFR28_00728 0.31 -1.8
767,326 + PFR28_00728 0.35 -1.4
767,349 + PFR28_00728 0.39 -1.2
767,349 + PFR28_00728 0.39 -0.4
767,349 + PFR28_00728 0.39 -1.2
767,349 + PFR28_00728 0.39 -3.3
767,350 - PFR28_00728 0.39 -0.1
767,350 - PFR28_00728 0.39 -0.4
767,350 - PFR28_00728 0.39 +0.2
767,380 + PFR28_00728 0.43 +0.5
767,380 + PFR28_00728 0.43 -0.9
767,380 + PFR28_00728 0.43 -1.8
767,380 + PFR28_00728 0.43 -1.1
767,380 + PFR28_00728 0.43 -0.9
767,381 - PFR28_00728 0.43 +0.1
767,404 + PFR28_00728 0.46 -0.7
767,404 + PFR28_00728 0.46 -1.2
767,404 + PFR28_00728 0.46 -0.4
767,404 + PFR28_00728 0.46 -1.3
767,404 + PFR28_00728 0.46 -2.6
767,405 - PFR28_00728 0.46 -2.4
767,405 - PFR28_00728 0.46 -3.1
767,405 - PFR28_00728 0.46 -2.5
767,405 - PFR28_00728 0.46 +1.6
767,464 + PFR28_00728 0.54 -0.4
767,465 - PFR28_00728 0.54 -0.4
767,536 + PFR28_00728 0.63 +0.2
767,537 - PFR28_00728 0.63 -1.5
767,537 - PFR28_00728 0.63 -1.7
767,579 - PFR28_00728 0.69 -0.9
767,579 - PFR28_00728 0.69 -1.5
767,958 + PFR28_00729 0.21 -2.5
767,958 + PFR28_00729 0.21 +0.1
767,958 + PFR28_00729 0.21 -2.1
767,958 + PFR28_00729 0.21 -1.0
767,959 - PFR28_00729 0.21 -1.4
767,959 - PFR28_00729 0.21 -1.9
767,979 + PFR28_00729 0.24 -1.7
767,980 - PFR28_00729 0.24 -1.5
767,980 - PFR28_00729 0.24 +0.2
767,980 - PFR28_00729 0.24 +0.4
767,980 - PFR28_00729 0.24 -3.1
768,079 + PFR28_00729 0.38 -1.9
768,079 + PFR28_00729 0.38 +0.2
768,079 + PFR28_00729 0.38 -2.4
768,079 + PFR28_00729 0.38 -1.4
768,079 + PFR28_00729 0.38 -1.4
768,079 + PFR28_00729 0.38 -2.4
768,079 + PFR28_00729 0.38 -0.1
768,079 + PFR28_00729 0.38 -2.1
768,079 + PFR28_00729 0.38 -1.7
768,079 + PFR28_00729 0.38 -0.4
768,079 + PFR28_00729 0.38 -1.7
768,080 - PFR28_00729 0.39 -0.9
768,080 - PFR28_00729 0.39 +0.4
768,080 - PFR28_00729 0.39 -2.1
768,080 - PFR28_00729 0.39 -0.9
768,080 - PFR28_00729 0.39 -2.7
768,080 - PFR28_00729 0.39 -1.0
768,080 - PFR28_00729 0.39 -0.7
768,080 - PFR28_00729 0.39 +0.6
768,080 - PFR28_00729 0.39 -2.3
768,186 + PFR28_00729 0.54 -0.9
768,187 - PFR28_00729 0.54 -4.0
768,187 - PFR28_00729 0.54 -1.3
768,247 + PFR28_00729 0.62 -3.7
768,248 - PFR28_00729 0.62 -0.5
768,248 - PFR28_00729 0.62 -1.5
768,270 - PFR28_00729 0.66 -1.7
768,785 + PFR28_00730 0.30 -2.4
768,975 - PFR28_00730 0.51 +0.8
768,975 - PFR28_00730 0.51 -1.4
768,975 - PFR28_00730 0.51 -2.3
769,175 + PFR28_00730 0.72 -3.8
769,353 + +0.4
769,427 + +1.5

Or see this region's nucleotide sequence