Strain Fitness in Pseudomonas sp. RS175 around PFR28_00442

Experiment: Cytidine carbon 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00440 and PFR28_00441 overlap by 7 nucleotidesPFR28_00441 and PFR28_00442 are separated by 99 nucleotidesPFR28_00442 and PFR28_00443 are separated by 2 nucleotides PFR28_00440: PFR28_00440 - hypothetical protein, at 480,835 to 482,985 _00440 PFR28_00441: PFR28_00441 - hypothetical protein, at 482,979 to 483,389 _00441 PFR28_00442: PFR28_00442 - hypothetical protein, at 483,489 to 483,698 _00442 PFR28_00443: PFR28_00443 - Putative prophage major tail sheath protein, at 483,701 to 484,867 _00443 Position (kb) 483 484Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 482.564 kb on + strand, within PFR28_00440at 482.723 kb on + strand, within PFR28_00440at 482.724 kb on - strand, within PFR28_00440at 482.748 kb on + strand, within PFR28_00440at 482.749 kb on - strand, within PFR28_00440at 482.749 kb on - strand, within PFR28_00440at 482.755 kb on - strand, within PFR28_00440at 482.755 kb on - strand, within PFR28_00440at 482.755 kb on - strand, within PFR28_00440at 482.755 kb on - strand, within PFR28_00440at 482.819 kb on + strandat 482.820 kb on - strandat 482.821 kb on + strandat 482.821 kb on + strandat 482.822 kb on - strandat 482.969 kb on + strandat 482.969 kb on + strandat 482.970 kb on - strandat 482.973 kb on + strandat 482.973 kb on + strandat 482.973 kb on + strandat 482.974 kb on - strandat 483.004 kb on + strandat 483.005 kb on - strandat 483.005 kb on - strandat 483.005 kb on - strandat 483.111 kb on + strand, within PFR28_00441at 483.124 kb on + strand, within PFR28_00441at 483.124 kb on + strand, within PFR28_00441at 483.124 kb on + strand, within PFR28_00441at 483.125 kb on - strand, within PFR28_00441at 483.125 kb on - strand, within PFR28_00441at 483.255 kb on - strand, within PFR28_00441at 483.287 kb on + strand, within PFR28_00441at 483.287 kb on + strand, within PFR28_00441at 483.287 kb on + strand, within PFR28_00441at 483.287 kb on + strand, within PFR28_00441at 483.288 kb on - strand, within PFR28_00441at 483.288 kb on - strand, within PFR28_00441at 483.288 kb on - strand, within PFR28_00441at 483.288 kb on - strand, within PFR28_00441at 483.387 kb on + strandat 483.388 kb on - strandat 483.507 kb on + strandat 483.508 kb on - strandat 483.508 kb on - strandat 483.514 kb on + strand, within PFR28_00442at 483.514 kb on + strand, within PFR28_00442at 483.514 kb on + strand, within PFR28_00442at 483.515 kb on - strand, within PFR28_00442at 483.515 kb on - strand, within PFR28_00442at 483.696 kb on + strandat 483.696 kb on + strandat 483.697 kb on - strandat 483.700 kb on + strandat 483.700 kb on + strandat 483.700 kb on + strandat 483.700 kb on + strandat 483.700 kb on + strandat 483.701 kb on - strandat 483.701 kb on - strandat 483.701 kb on - strandat 483.701 kb on - strandat 483.701 kb on - strandat 483.701 kb on - strandat 483.701 kb on - strandat 483.701 kb on - strandat 483.701 kb on - strandat 483.701 kb on - strandat 483.737 kb on - strandat 483.927 kb on - strand, within PFR28_00443at 483.927 kb on - strand, within PFR28_00443at 483.959 kb on + strand, within PFR28_00443at 483.959 kb on + strand, within PFR28_00443at 483.959 kb on + strand, within PFR28_00443at 483.959 kb on + strand, within PFR28_00443at 483.960 kb on - strand, within PFR28_00443at 484.215 kb on - strand, within PFR28_00443at 484.286 kb on + strand, within PFR28_00443at 484.287 kb on - strand, within PFR28_00443at 484.287 kb on - strand, within PFR28_00443at 484.287 kb on - strand, within PFR28_00443at 484.391 kb on + strand, within PFR28_00443at 484.421 kb on + strand, within PFR28_00443at 484.421 kb on + strand, within PFR28_00443at 484.422 kb on - strand, within PFR28_00443at 484.422 kb on - strand, within PFR28_00443at 484.441 kb on + strand, within PFR28_00443at 484.478 kb on + strand, within PFR28_00443at 484.479 kb on - strand, within PFR28_00443at 484.482 kb on - strand, within PFR28_00443at 484.550 kb on + strand, within PFR28_00443at 484.550 kb on + strand, within PFR28_00443at 484.550 kb on + strand, within PFR28_00443at 484.551 kb on - strand, within PFR28_00443

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine carbon 10 mM
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482,564 + PFR28_00440 0.80 +0.9
482,723 + PFR28_00440 0.88 -0.8
482,724 - PFR28_00440 0.88 +0.9
482,748 + PFR28_00440 0.89 -2.1
482,749 - PFR28_00440 0.89 -1.5
482,749 - PFR28_00440 0.89 +1.0
482,755 - PFR28_00440 0.89 -0.2
482,755 - PFR28_00440 0.89 +0.8
482,755 - PFR28_00440 0.89 +0.5
482,755 - PFR28_00440 0.89 -0.0
482,819 + -0.2
482,820 - +0.2
482,821 + -1.2
482,821 + +0.1
482,822 - -0.5
482,969 + +0.2
482,969 + -0.1
482,970 - -2.9
482,973 + +1.4
482,973 + +0.5
482,973 + -0.4
482,974 - +0.3
483,004 + +0.2
483,005 - +0.2
483,005 - +0.4
483,005 - -0.4
483,111 + PFR28_00441 0.32 +1.0
483,124 + PFR28_00441 0.35 +0.5
483,124 + PFR28_00441 0.35 +0.3
483,124 + PFR28_00441 0.35 +0.0
483,125 - PFR28_00441 0.36 +0.2
483,125 - PFR28_00441 0.36 -1.1
483,255 - PFR28_00441 0.67 -2.1
483,287 + PFR28_00441 0.75 -0.6
483,287 + PFR28_00441 0.75 -0.1
483,287 + PFR28_00441 0.75 +1.6
483,287 + PFR28_00441 0.75 -0.6
483,288 - PFR28_00441 0.75 -0.4
483,288 - PFR28_00441 0.75 +1.3
483,288 - PFR28_00441 0.75 +1.0
483,288 - PFR28_00441 0.75 -0.1
483,387 + -0.9
483,388 - -1.2
483,507 + -0.4
483,508 - -0.1
483,508 - +0.1
483,514 + PFR28_00442 0.12 -0.9
483,514 + PFR28_00442 0.12 -2.1
483,514 + PFR28_00442 0.12 +1.1
483,515 - PFR28_00442 0.12 -2.5
483,515 - PFR28_00442 0.12 -0.4
483,696 + +0.3
483,696 + -0.4
483,697 - +0.0
483,700 + -0.3
483,700 + -0.3
483,700 + -0.9
483,700 + +0.8
483,700 + -0.9
483,701 - +0.4
483,701 - +0.7
483,701 - +0.4
483,701 - -1.1
483,701 - +1.6
483,701 - -2.3
483,701 - +0.9
483,701 - -0.5
483,701 - -0.2
483,701 - -0.2
483,737 - -1.3
483,927 - PFR28_00443 0.19 +0.1
483,927 - PFR28_00443 0.19 +0.2
483,959 + PFR28_00443 0.22 +0.3
483,959 + PFR28_00443 0.22 -0.1
483,959 + PFR28_00443 0.22 -0.4
483,959 + PFR28_00443 0.22 +0.7
483,960 - PFR28_00443 0.22 -0.4
484,215 - PFR28_00443 0.44 +0.8
484,286 + PFR28_00443 0.50 +0.3
484,287 - PFR28_00443 0.50 +0.2
484,287 - PFR28_00443 0.50 +1.4
484,287 - PFR28_00443 0.50 -0.7
484,391 + PFR28_00443 0.59 +0.9
484,421 + PFR28_00443 0.62 -2.2
484,421 + PFR28_00443 0.62 +0.7
484,422 - PFR28_00443 0.62 +0.3
484,422 - PFR28_00443 0.62 -0.7
484,441 + PFR28_00443 0.63 -0.2
484,478 + PFR28_00443 0.67 +0.1
484,479 - PFR28_00443 0.67 +1.9
484,482 - PFR28_00443 0.67 +1.4
484,550 + PFR28_00443 0.73 -0.0
484,550 + PFR28_00443 0.73 +0.7
484,550 + PFR28_00443 0.73 -0.2
484,551 - PFR28_00443 0.73 -0.4

Or see this region's nucleotide sequence