Strain Fitness in Pseudomonas sp. RS175 around PFR28_00356

Experiment: Cytidine carbon 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00355 and PFR28_00356 overlap by 4 nucleotidesPFR28_00356 and PFR28_00357 are separated by 43 nucleotides PFR28_00355: PFR28_00355 - Sensor histidine kinase RcsC, at 388,317 to 390,569 _00355 PFR28_00356: PFR28_00356 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 390,566 to 391,576 _00356 PFR28_00357: PFR28_00357 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 391,620 to 392,621 _00357 Position (kb) 390 391 392Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 389.639 kb on + strand, within PFR28_00355at 389.639 kb on + strand, within PFR28_00355at 389.639 kb on + strand, within PFR28_00355at 389.639 kb on + strand, within PFR28_00355at 389.640 kb on - strand, within PFR28_00355at 389.640 kb on - strand, within PFR28_00355at 389.640 kb on - strand, within PFR28_00355at 389.668 kb on + strand, within PFR28_00355at 389.669 kb on - strand, within PFR28_00355at 389.769 kb on + strand, within PFR28_00355at 389.769 kb on + strand, within PFR28_00355at 389.770 kb on - strand, within PFR28_00355at 389.770 kb on - strand, within PFR28_00355at 389.827 kb on + strand, within PFR28_00355at 389.827 kb on + strand, within PFR28_00355at 389.828 kb on - strand, within PFR28_00355at 389.828 kb on - strand, within PFR28_00355at 389.828 kb on - strand, within PFR28_00355at 389.828 kb on - strand, within PFR28_00355at 389.970 kb on + strand, within PFR28_00355at 389.970 kb on + strand, within PFR28_00355at 389.970 kb on + strand, within PFR28_00355at 389.971 kb on - strand, within PFR28_00355at 390.268 kb on - strand, within PFR28_00355at 390.438 kb on + strandat 390.438 kb on + strandat 390.439 kb on - strandat 390.489 kb on + strandat 390.489 kb on + strandat 390.489 kb on + strandat 390.490 kb on - strandat 390.490 kb on - strandat 390.490 kb on - strandat 390.490 kb on - strandat 390.492 kb on + strandat 390.492 kb on + strandat 390.492 kb on + strandat 390.493 kb on - strandat 390.698 kb on + strand, within PFR28_00356at 390.699 kb on - strand, within PFR28_00356at 390.717 kb on + strand, within PFR28_00356at 390.717 kb on + strand, within PFR28_00356at 390.718 kb on - strand, within PFR28_00356at 390.718 kb on - strand, within PFR28_00356at 391.254 kb on + strand, within PFR28_00356at 391.254 kb on + strand, within PFR28_00356at 391.254 kb on + strand, within PFR28_00356at 391.254 kb on + strand, within PFR28_00356at 391.254 kb on + strand, within PFR28_00356at 391.255 kb on - strand, within PFR28_00356at 391.255 kb on - strand, within PFR28_00356at 391.255 kb on - strand, within PFR28_00356at 391.255 kb on - strand, within PFR28_00356at 391.283 kb on + strand, within PFR28_00356at 391.310 kb on + strand, within PFR28_00356at 391.310 kb on + strand, within PFR28_00356at 391.311 kb on - strand, within PFR28_00356at 391.417 kb on + strand, within PFR28_00356at 391.417 kb on + strand, within PFR28_00356at 391.417 kb on + strand, within PFR28_00356at 391.418 kb on - strand, within PFR28_00356at 391.478 kb on + strandat 391.478 kb on + strandat 391.478 kb on + strandat 391.479 kb on - strandat 391.479 kb on - strandat 391.542 kb on + strandat 391.542 kb on + strandat 391.542 kb on + strandat 391.543 kb on - strandat 391.543 kb on - strandat 391.543 kb on - strandat 391.543 kb on - strandat 391.543 kb on - strandat 391.630 kb on + strandat 391.630 kb on + strandat 391.630 kb on + strandat 391.631 kb on - strandat 391.965 kb on + strand, within PFR28_00357at 391.965 kb on + strand, within PFR28_00357at 391.966 kb on - strand, within PFR28_00357at 391.966 kb on - strand, within PFR28_00357at 392.028 kb on + strand, within PFR28_00357at 392.028 kb on + strand, within PFR28_00357at 392.028 kb on + strand, within PFR28_00357at 392.028 kb on + strand, within PFR28_00357at 392.028 kb on + strand, within PFR28_00357at 392.028 kb on + strand, within PFR28_00357at 392.028 kb on + strand, within PFR28_00357at 392.029 kb on - strand, within PFR28_00357at 392.029 kb on - strand, within PFR28_00357at 392.029 kb on - strand, within PFR28_00357at 392.029 kb on - strand, within PFR28_00357at 392.029 kb on - strand, within PFR28_00357at 392.059 kb on - strand, within PFR28_00357at 392.173 kb on - strand, within PFR28_00357at 392.173 kb on - strand, within PFR28_00357at 392.173 kb on - strand, within PFR28_00357at 392.173 kb on - strand, within PFR28_00357at 392.244 kb on + strand, within PFR28_00357at 392.244 kb on + strand, within PFR28_00357at 392.245 kb on - strand, within PFR28_00357at 392.256 kb on + strand, within PFR28_00357at 392.257 kb on - strand, within PFR28_00357

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine carbon 10 mM
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389,639 + PFR28_00355 0.59 +0.5
389,639 + PFR28_00355 0.59 +0.3
389,639 + PFR28_00355 0.59 -0.3
389,639 + PFR28_00355 0.59 +0.7
389,640 - PFR28_00355 0.59 +0.3
389,640 - PFR28_00355 0.59 +0.4
389,640 - PFR28_00355 0.59 +0.7
389,668 + PFR28_00355 0.60 -0.9
389,669 - PFR28_00355 0.60 -0.9
389,769 + PFR28_00355 0.64 +0.6
389,769 + PFR28_00355 0.64 +0.1
389,770 - PFR28_00355 0.64 +0.1
389,770 - PFR28_00355 0.64 -0.8
389,827 + PFR28_00355 0.67 -2.0
389,827 + PFR28_00355 0.67 +0.1
389,828 - PFR28_00355 0.67 -1.2
389,828 - PFR28_00355 0.67 -0.1
389,828 - PFR28_00355 0.67 +1.0
389,828 - PFR28_00355 0.67 -2.1
389,970 + PFR28_00355 0.73 +0.1
389,970 + PFR28_00355 0.73 +0.6
389,970 + PFR28_00355 0.73 +0.9
389,971 - PFR28_00355 0.73 +0.5
390,268 - PFR28_00355 0.87 -2.4
390,438 + +0.2
390,438 + -0.9
390,439 - +0.3
390,489 + +0.0
390,489 + -1.6
390,489 + +0.2
390,490 - +0.4
390,490 - -2.6
390,490 - +0.7
390,490 - +1.2
390,492 + +0.6
390,492 + -1.4
390,492 + +0.4
390,493 - +2.5
390,698 + PFR28_00356 0.13 +0.1
390,699 - PFR28_00356 0.13 +0.1
390,717 + PFR28_00356 0.15 -3.9
390,717 + PFR28_00356 0.15 -2.0
390,718 - PFR28_00356 0.15 +0.7
390,718 - PFR28_00356 0.15 -2.6
391,254 + PFR28_00356 0.68 -1.4
391,254 + PFR28_00356 0.68 -1.9
391,254 + PFR28_00356 0.68 -2.9
391,254 + PFR28_00356 0.68 -0.1
391,254 + PFR28_00356 0.68 -4.1
391,255 - PFR28_00356 0.68 -1.8
391,255 - PFR28_00356 0.68 -1.4
391,255 - PFR28_00356 0.68 +0.4
391,255 - PFR28_00356 0.68 +0.2
391,283 + PFR28_00356 0.71 -2.0
391,310 + PFR28_00356 0.74 -0.4
391,310 + PFR28_00356 0.74 -1.1
391,311 - PFR28_00356 0.74 -2.0
391,417 + PFR28_00356 0.84 -3.2
391,417 + PFR28_00356 0.84 -1.2
391,417 + PFR28_00356 0.84 -2.6
391,418 - PFR28_00356 0.84 -0.6
391,478 + -2.2
391,478 + -2.6
391,478 + -0.7
391,479 - +0.1
391,479 - +2.6
391,542 + -0.8
391,542 + -0.9
391,542 + -3.5
391,543 - -0.1
391,543 - +0.2
391,543 - +0.3
391,543 - +0.5
391,543 - -0.3
391,630 + +0.4
391,630 + +0.0
391,630 + -1.7
391,631 - -0.2
391,965 + PFR28_00357 0.34 -1.0
391,965 + PFR28_00357 0.34 +0.7
391,966 - PFR28_00357 0.35 +0.3
391,966 - PFR28_00357 0.35 -1.1
392,028 + PFR28_00357 0.41 +2.9
392,028 + PFR28_00357 0.41 +0.2
392,028 + PFR28_00357 0.41 +0.2
392,028 + PFR28_00357 0.41 +1.8
392,028 + PFR28_00357 0.41 -2.2
392,028 + PFR28_00357 0.41 -0.5
392,028 + PFR28_00357 0.41 -0.0
392,029 - PFR28_00357 0.41 -0.4
392,029 - PFR28_00357 0.41 -0.7
392,029 - PFR28_00357 0.41 -3.2
392,029 - PFR28_00357 0.41 -2.1
392,029 - PFR28_00357 0.41 +0.6
392,059 - PFR28_00357 0.44 +1.8
392,173 - PFR28_00357 0.55 +0.4
392,173 - PFR28_00357 0.55 +0.2
392,173 - PFR28_00357 0.55 +1.6
392,173 - PFR28_00357 0.55 +0.7
392,244 + PFR28_00357 0.62 -1.0
392,244 + PFR28_00357 0.62 +0.1
392,245 - PFR28_00357 0.62 +0.9
392,256 + PFR28_00357 0.63 -1.1
392,257 - PFR28_00357 0.64 -1.2

Or see this region's nucleotide sequence