Experiment: Cytidine carbon 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00226 and PFR28_00227 are separated by 301 nucleotides PFR28_00227 and PFR28_00228 are separated by 39 nucleotides PFR28_00228 and PFR28_00229 are separated by 495 nucleotides
PFR28_00226: PFR28_00226 - hypothetical protein, at 253,089 to 253,349
_00226
PFR28_00227: PFR28_00227 - Protein PsiE, at 253,651 to 254,151
_00227
PFR28_00228: PFR28_00228 - hypothetical protein, at 254,191 to 254,508
_00228
PFR28_00229: PFR28_00229 - hypothetical protein, at 255,004 to 255,411
_00229
Position (kb) 254
255 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 253.194 kb on + strand, within PFR28_00226 at 253.194 kb on + strand, within PFR28_00226 at 253.194 kb on + strand, within PFR28_00226 at 253.195 kb on - strand, within PFR28_00226 at 253.195 kb on - strand, within PFR28_00226 at 253.195 kb on - strand, within PFR28_00226 at 253.195 kb on - strand, within PFR28_00226 at 253.195 kb on - strand, within PFR28_00226 at 253.330 kb on + strand at 253.331 kb on - strand at 253.332 kb on + strand at 253.332 kb on + strand at 253.332 kb on + strand at 253.332 kb on + strand at 253.333 kb on - strand at 253.333 kb on - strand at 253.333 kb on - strand at 253.333 kb on - strand at 253.378 kb on + strand at 253.378 kb on + strand at 253.442 kb on + strand at 253.453 kb on + strand at 253.454 kb on - strand at 253.458 kb on + strand at 253.459 kb on - strand at 253.459 kb on - strand at 253.459 kb on - strand at 253.459 kb on - strand at 253.459 kb on - strand at 253.473 kb on - strand at 253.636 kb on + strand at 253.636 kb on + strand at 253.637 kb on - strand at 253.637 kb on - strand at 253.637 kb on - strand at 253.637 kb on - strand at 253.852 kb on + strand, within PFR28_00227 at 253.853 kb on - strand, within PFR28_00227 at 253.853 kb on - strand, within PFR28_00227 at 253.853 kb on - strand, within PFR28_00227 at 253.853 kb on - strand, within PFR28_00227 at 253.853 kb on - strand, within PFR28_00227 at 253.882 kb on + strand, within PFR28_00227 at 253.882 kb on + strand, within PFR28_00227 at 253.882 kb on + strand, within PFR28_00227 at 253.882 kb on + strand, within PFR28_00227 at 253.882 kb on + strand, within PFR28_00227 at 253.882 kb on + strand, within PFR28_00227 at 253.882 kb on + strand, within PFR28_00227 at 253.882 kb on + strand, within PFR28_00227 at 253.882 kb on + strand, within PFR28_00227 at 253.882 kb on + strand, within PFR28_00227 at 253.882 kb on + strand, within PFR28_00227 at 253.883 kb on - strand, within PFR28_00227 at 253.883 kb on - strand, within PFR28_00227 at 253.921 kb on + strand, within PFR28_00227 at 253.921 kb on + strand, within PFR28_00227 at 253.921 kb on + strand, within PFR28_00227 at 253.922 kb on - strand, within PFR28_00227 at 253.922 kb on - strand, within PFR28_00227 at 253.922 kb on - strand, within PFR28_00227 at 253.922 kb on - strand, within PFR28_00227 at 253.999 kb on + strand, within PFR28_00227 at 253.999 kb on + strand, within PFR28_00227 at 253.999 kb on + strand, within PFR28_00227 at 253.999 kb on + strand, within PFR28_00227 at 253.999 kb on + strand, within PFR28_00227 at 254.000 kb on - strand, within PFR28_00227 at 254.000 kb on - strand, within PFR28_00227 at 254.000 kb on - strand, within PFR28_00227 at 254.000 kb on - strand, within PFR28_00227 at 254.000 kb on - strand, within PFR28_00227 at 254.000 kb on - strand, within PFR28_00227 at 254.098 kb on - strand, within PFR28_00227 at 254.149 kb on + strand at 254.149 kb on + strand at 254.149 kb on + strand at 254.150 kb on - strand at 254.150 kb on - strand at 254.410 kb on + strand, within PFR28_00228 at 254.411 kb on - strand, within PFR28_00228 at 254.462 kb on + strand, within PFR28_00228 at 254.462 kb on + strand, within PFR28_00228 at 254.463 kb on - strand, within PFR28_00228 at 254.485 kb on - strand at 254.562 kb on + strand at 254.562 kb on + strand at 254.563 kb on - strand at 254.563 kb on - strand at 254.601 kb on - strand at 254.601 kb on - strand at 254.601 kb on - strand at 254.601 kb on - strand at 254.601 kb on - strand at 254.675 kb on + strand at 254.675 kb on + strand at 254.675 kb on + strand at 254.675 kb on + strand at 254.844 kb on + strand at 254.844 kb on + strand at 254.844 kb on + strand at 254.845 kb on - strand at 254.845 kb on - strand at 254.874 kb on - strand at 254.887 kb on + strand at 254.887 kb on + strand at 254.887 kb on + strand at 254.888 kb on - strand at 254.891 kb on + strand at 254.891 kb on + strand at 254.892 kb on - strand at 254.892 kb on - strand at 254.938 kb on - strand at 254.991 kb on + strand at 254.992 kb on - strand at 255.003 kb on + strand at 255.003 kb on + strand at 255.003 kb on + strand at 255.003 kb on + strand at 255.003 kb on + strand at 255.004 kb on - strand at 255.004 kb on - strand at 255.004 kb on - strand at 255.004 kb on - strand at 255.004 kb on - strand at 255.004 kb on - strand at 255.033 kb on + strand at 255.034 kb on - strand at 255.065 kb on + strand, within PFR28_00229 at 255.065 kb on + strand, within PFR28_00229 at 255.065 kb on + strand, within PFR28_00229 at 255.065 kb on + strand, within PFR28_00229 at 255.066 kb on - strand, within PFR28_00229 at 255.069 kb on + strand, within PFR28_00229 at 255.069 kb on + strand, within PFR28_00229 at 255.069 kb on + strand, within PFR28_00229 at 255.069 kb on + strand, within PFR28_00229 at 255.069 kb on + strand, within PFR28_00229 at 255.069 kb on + strand, within PFR28_00229 at 255.069 kb on + strand, within PFR28_00229 at 255.069 kb on + strand, within PFR28_00229 at 255.069 kb on + strand, within PFR28_00229 at 255.069 kb on + strand, within PFR28_00229 at 255.069 kb on + strand, within PFR28_00229 at 255.069 kb on + strand, within PFR28_00229 at 255.069 kb on + strand, within PFR28_00229 at 255.069 kb on + strand, within PFR28_00229 at 255.069 kb on + strand, within PFR28_00229 at 255.069 kb on + strand, within PFR28_00229 at 255.070 kb on - strand, within PFR28_00229 at 255.070 kb on - strand, within PFR28_00229 at 255.070 kb on - strand, within PFR28_00229 at 255.070 kb on - strand, within PFR28_00229 at 255.070 kb on - strand, within PFR28_00229 at 255.070 kb on - strand, within PFR28_00229 at 255.070 kb on - strand, within PFR28_00229 at 255.070 kb on - strand, within PFR28_00229 at 255.070 kb on - strand, within PFR28_00229 at 255.070 kb on - strand, within PFR28_00229 at 255.070 kb on - strand, within PFR28_00229 at 255.070 kb on - strand, within PFR28_00229 at 255.070 kb on - strand, within PFR28_00229 at 255.070 kb on - strand, within PFR28_00229 at 255.070 kb on - strand, within PFR28_00229 at 255.070 kb on - strand, within PFR28_00229 at 255.070 kb on - strand, within PFR28_00229 at 255.070 kb on - strand, within PFR28_00229 at 255.070 kb on - strand, within PFR28_00229 at 255.070 kb on - strand, within PFR28_00229
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine carbon 10 mM remove 253,194 + PFR28_00226 0.40 +1.1 253,194 + PFR28_00226 0.40 -2.1 253,194 + PFR28_00226 0.40 +1.0 253,195 - PFR28_00226 0.41 +0.3 253,195 - PFR28_00226 0.41 -2.6 253,195 - PFR28_00226 0.41 +0.2 253,195 - PFR28_00226 0.41 -1.0 253,195 - PFR28_00226 0.41 +0.8 253,330 + +1.5 253,331 - -0.9 253,332 + +0.4 253,332 + +1.0 253,332 + -0.3 253,332 + +0.2 253,333 - -0.6 253,333 - -0.2 253,333 - -0.4 253,333 - -1.0 253,378 + -2.4 253,378 + -1.0 253,442 + +1.9 253,453 + +0.0 253,454 - -1.4 253,458 + -1.4 253,459 - -0.5 253,459 - -0.1 253,459 - +3.3 253,459 - +0.0 253,459 - +1.3 253,473 - -1.2 253,636 + -0.0 253,636 + +1.0 253,637 - -0.7 253,637 - -1.0 253,637 - -1.9 253,637 - -2.4 253,852 + PFR28_00227 0.40 +0.3 253,853 - PFR28_00227 0.40 -0.1 253,853 - PFR28_00227 0.40 -1.2 253,853 - PFR28_00227 0.40 +0.9 253,853 - PFR28_00227 0.40 +0.8 253,853 - PFR28_00227 0.40 +1.3 253,882 + PFR28_00227 0.46 +0.1 253,882 + PFR28_00227 0.46 -0.8 253,882 + PFR28_00227 0.46 +0.8 253,882 + PFR28_00227 0.46 +1.0 253,882 + PFR28_00227 0.46 -0.4 253,882 + PFR28_00227 0.46 -0.3 253,882 + PFR28_00227 0.46 +0.1 253,882 + PFR28_00227 0.46 -0.7 253,882 + PFR28_00227 0.46 +2.6 253,882 + PFR28_00227 0.46 -0.0 253,882 + PFR28_00227 0.46 -1.0 253,883 - PFR28_00227 0.46 -0.3 253,883 - PFR28_00227 0.46 +0.8 253,921 + PFR28_00227 0.54 -1.7 253,921 + PFR28_00227 0.54 -0.2 253,921 + PFR28_00227 0.54 -1.3 253,922 - PFR28_00227 0.54 +1.0 253,922 - PFR28_00227 0.54 +1.0 253,922 - PFR28_00227 0.54 +0.2 253,922 - PFR28_00227 0.54 -0.8 253,999 + PFR28_00227 0.69 -0.2 253,999 + PFR28_00227 0.69 -0.7 253,999 + PFR28_00227 0.69 -0.0 253,999 + PFR28_00227 0.69 -1.5 253,999 + PFR28_00227 0.69 +1.0 254,000 - PFR28_00227 0.70 +1.4 254,000 - PFR28_00227 0.70 -2.4 254,000 - PFR28_00227 0.70 -0.4 254,000 - PFR28_00227 0.70 -3.7 254,000 - PFR28_00227 0.70 -0.1 254,000 - PFR28_00227 0.70 +1.4 254,098 - PFR28_00227 0.89 -0.3 254,149 + -1.2 254,149 + +2.7 254,149 + +1.3 254,150 - +0.6 254,150 - -1.7 254,410 + PFR28_00228 0.69 -1.4 254,411 - PFR28_00228 0.69 -0.3 254,462 + PFR28_00228 0.85 -0.5 254,462 + PFR28_00228 0.85 -3.3 254,463 - PFR28_00228 0.86 -1.2 254,485 - +1.4 254,562 + +0.6 254,562 + -0.6 254,563 - -0.2 254,563 - +0.3 254,601 - -0.7 254,601 - +0.5 254,601 - -0.9 254,601 - +0.3 254,601 - -0.1 254,675 + +0.6 254,675 + +1.6 254,675 + -3.0 254,675 + +0.6 254,844 + -2.1 254,844 + +0.5 254,844 + +0.6 254,845 - +0.5 254,845 - -2.2 254,874 - +0.9 254,887 + -0.2 254,887 + +0.4 254,887 + +0.4 254,888 - -0.9 254,891 + +0.4 254,891 + +0.3 254,892 - +0.7 254,892 - +1.1 254,938 - -3.1 254,991 + -0.8 254,992 - -0.8 255,003 + -0.3 255,003 + -0.3 255,003 + -1.3 255,003 + -0.3 255,003 + -0.6 255,004 - +0.0 255,004 - -2.2 255,004 - +1.0 255,004 - +0.9 255,004 - +0.3 255,004 - -1.6 255,033 + +0.5 255,034 - +0.3 255,065 + PFR28_00229 0.15 +0.9 255,065 + PFR28_00229 0.15 -0.3 255,065 + PFR28_00229 0.15 +1.0 255,065 + PFR28_00229 0.15 +1.6 255,066 - PFR28_00229 0.15 -0.5 255,069 + PFR28_00229 0.16 +0.2 255,069 + PFR28_00229 0.16 +0.8 255,069 + PFR28_00229 0.16 -0.2 255,069 + PFR28_00229 0.16 +0.6 255,069 + PFR28_00229 0.16 -0.1 255,069 + PFR28_00229 0.16 +0.4 255,069 + PFR28_00229 0.16 -0.8 255,069 + PFR28_00229 0.16 +3.0 255,069 + PFR28_00229 0.16 -0.9 255,069 + PFR28_00229 0.16 +0.1 255,069 + PFR28_00229 0.16 +0.3 255,069 + PFR28_00229 0.16 +1.1 255,069 + PFR28_00229 0.16 -0.7 255,069 + PFR28_00229 0.16 -1.1 255,069 + PFR28_00229 0.16 -0.9 255,069 + PFR28_00229 0.16 +0.4 255,070 - PFR28_00229 0.16 +0.1 255,070 - PFR28_00229 0.16 +0.6 255,070 - PFR28_00229 0.16 +0.8 255,070 - PFR28_00229 0.16 +0.4 255,070 - PFR28_00229 0.16 +1.3 255,070 - PFR28_00229 0.16 -0.2 255,070 - PFR28_00229 0.16 +0.6 255,070 - PFR28_00229 0.16 +0.6 255,070 - PFR28_00229 0.16 +0.8 255,070 - PFR28_00229 0.16 +0.6 255,070 - PFR28_00229 0.16 +0.2 255,070 - PFR28_00229 0.16 +0.4 255,070 - PFR28_00229 0.16 -2.1 255,070 - PFR28_00229 0.16 +1.3 255,070 - PFR28_00229 0.16 -2.3 255,070 - PFR28_00229 0.16 +0.1 255,070 - PFR28_00229 0.16 +1.5 255,070 - PFR28_00229 0.16 -0.0 255,070 - PFR28_00229 0.16 +1.1 255,070 - PFR28_00229 0.16 -1.4
Or see this region's nucleotide sequence