Strain Fitness in Pseudomonas sp. RS175 around PFR28_00068

Experiment: Cytidine carbon 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00066 and PFR28_00067 are separated by 7 nucleotidesPFR28_00067 and PFR28_00068 are separated by 11 nucleotidesPFR28_00068 and PFR28_00069 are separated by 61 nucleotidesPFR28_00069 and PFR28_00070 are separated by 97 nucleotides PFR28_00066: PFR28_00066 - hypothetical protein, at 76,420 to 77,823 _00066 PFR28_00067: PFR28_00067 - Ribosome association toxin RatA, at 77,831 to 78,274 _00067 PFR28_00068: PFR28_00068 - hypothetical protein, at 78,286 to 78,573 _00068 PFR28_00069: PFR28_00069 - Outer membrane protein assembly factor BamE, at 78,635 to 79,162 _00069 PFR28_00070: PFR28_00070 - Ferric uptake regulation protein, at 79,260 to 79,664 _00070 Position (kb) 78 79Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 77.429 kb on - strand, within PFR28_00066at 77.429 kb on - strand, within PFR28_00066at 77.526 kb on + strand, within PFR28_00066at 77.526 kb on + strand, within PFR28_00066at 77.526 kb on + strand, within PFR28_00066at 77.526 kb on + strand, within PFR28_00066at 77.526 kb on + strand, within PFR28_00066at 77.526 kb on + strand, within PFR28_00066at 77.526 kb on + strand, within PFR28_00066at 77.526 kb on + strand, within PFR28_00066at 77.526 kb on + strand, within PFR28_00066at 77.526 kb on + strand, within PFR28_00066at 77.526 kb on + strand, within PFR28_00066at 77.526 kb on + strand, within PFR28_00066at 77.526 kb on + strand, within PFR28_00066at 77.526 kb on + strand, within PFR28_00066at 77.527 kb on - strand, within PFR28_00066at 77.527 kb on - strand, within PFR28_00066at 77.527 kb on - strand, within PFR28_00066at 77.527 kb on - strand, within PFR28_00066at 77.527 kb on - strand, within PFR28_00066at 77.527 kb on - strand, within PFR28_00066at 77.527 kb on - strand, within PFR28_00066at 77.527 kb on - strand, within PFR28_00066at 77.527 kb on - strand, within PFR28_00066at 77.527 kb on - strand, within PFR28_00066at 77.528 kb on + strand, within PFR28_00066at 77.529 kb on - strand, within PFR28_00066at 77.529 kb on - strand, within PFR28_00066at 77.529 kb on - strand, within PFR28_00066at 77.529 kb on - strand, within PFR28_00066at 77.529 kb on - strand, within PFR28_00066at 77.578 kb on + strand, within PFR28_00066at 77.578 kb on + strand, within PFR28_00066at 77.578 kb on + strand, within PFR28_00066at 77.579 kb on - strand, within PFR28_00066at 77.579 kb on - strand, within PFR28_00066at 77.672 kb on + strand, within PFR28_00066at 77.673 kb on - strand, within PFR28_00066at 77.709 kb on - strandat 77.770 kb on + strandat 77.770 kb on + strandat 77.770 kb on + strandat 77.770 kb on + strandat 77.770 kb on + strandat 77.770 kb on + strandat 77.770 kb on + strandat 77.828 kb on + strandat 77.828 kb on + strandat 77.828 kb on + strandat 77.828 kb on + strandat 77.828 kb on + strandat 77.828 kb on + strandat 77.828 kb on + strandat 77.828 kb on + strandat 77.842 kb on + strandat 78.281 kb on + strandat 78.282 kb on - strandat 78.282 kb on - strandat 78.282 kb on - strandat 78.282 kb on - strandat 78.292 kb on + strandat 78.292 kb on + strandat 78.292 kb on + strandat 78.292 kb on + strandat 78.292 kb on + strandat 78.293 kb on - strandat 78.293 kb on - strandat 78.293 kb on - strandat 78.293 kb on - strandat 78.293 kb on - strandat 78.491 kb on - strand, within PFR28_00068at 78.567 kb on + strandat 78.567 kb on + strandat 78.567 kb on + strandat 78.568 kb on - strandat 78.568 kb on - strandat 78.568 kb on - strandat 78.568 kb on - strandat 78.571 kb on + strandat 78.571 kb on + strandat 78.572 kb on - strandat 78.572 kb on - strandat 78.572 kb on - strandat 78.572 kb on - strandat 78.587 kb on - strandat 78.595 kb on + strandat 78.787 kb on + strand, within PFR28_00069at 78.787 kb on + strand, within PFR28_00069at 78.788 kb on - strand, within PFR28_00069at 78.788 kb on - strand, within PFR28_00069at 78.788 kb on - strand, within PFR28_00069

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine carbon 10 mM
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77,429 - PFR28_00066 0.72 +0.6
77,429 - PFR28_00066 0.72 +2.4
77,526 + PFR28_00066 0.79 -0.5
77,526 + PFR28_00066 0.79 +1.6
77,526 + PFR28_00066 0.79 -0.3
77,526 + PFR28_00066 0.79 +0.8
77,526 + PFR28_00066 0.79 +0.2
77,526 + PFR28_00066 0.79 -0.7
77,526 + PFR28_00066 0.79 -1.3
77,526 + PFR28_00066 0.79 +0.5
77,526 + PFR28_00066 0.79 -1.0
77,526 + PFR28_00066 0.79 +1.6
77,526 + PFR28_00066 0.79 -0.4
77,526 + PFR28_00066 0.79 -0.2
77,526 + PFR28_00066 0.79 +1.1
77,526 + PFR28_00066 0.79 +0.8
77,527 - PFR28_00066 0.79 +0.3
77,527 - PFR28_00066 0.79 +2.5
77,527 - PFR28_00066 0.79 +0.4
77,527 - PFR28_00066 0.79 +1.3
77,527 - PFR28_00066 0.79 -2.1
77,527 - PFR28_00066 0.79 -1.6
77,527 - PFR28_00066 0.79 -1.8
77,527 - PFR28_00066 0.79 +1.4
77,527 - PFR28_00066 0.79 +1.6
77,527 - PFR28_00066 0.79 -0.4
77,528 + PFR28_00066 0.79 +1.9
77,529 - PFR28_00066 0.79 +0.7
77,529 - PFR28_00066 0.79 +1.0
77,529 - PFR28_00066 0.79 -0.1
77,529 - PFR28_00066 0.79 +0.6
77,529 - PFR28_00066 0.79 -1.7
77,578 + PFR28_00066 0.82 +0.3
77,578 + PFR28_00066 0.82 +0.1
77,578 + PFR28_00066 0.82 -0.7
77,579 - PFR28_00066 0.83 -1.6
77,579 - PFR28_00066 0.83 +0.6
77,672 + PFR28_00066 0.89 +0.5
77,673 - PFR28_00066 0.89 -0.5
77,709 - +1.6
77,770 + +1.6
77,770 + -1.4
77,770 + -1.9
77,770 + -0.9
77,770 + +0.5
77,770 + -2.1
77,770 + -0.7
77,828 + -1.1
77,828 + -1.8
77,828 + +0.5
77,828 + +0.8
77,828 + +0.4
77,828 + +1.1
77,828 + +1.0
77,828 + +0.2
77,842 + -1.2
78,281 + +1.5
78,282 - +0.9
78,282 - +0.6
78,282 - +2.1
78,282 - -4.3
78,292 + -1.4
78,292 + -3.4
78,292 + +0.2
78,292 + -0.3
78,292 + +0.9
78,293 - -0.6
78,293 - -0.1
78,293 - -0.6
78,293 - -0.4
78,293 - +0.4
78,491 - PFR28_00068 0.71 -1.7
78,567 + +0.7
78,567 + +0.2
78,567 + +1.0
78,568 - -0.9
78,568 - -0.1
78,568 - -0.1
78,568 - +0.3
78,571 + -1.4
78,571 + -0.6
78,572 - -1.4
78,572 - -0.2
78,572 - -0.2
78,572 - -0.7
78,587 - -0.5
78,595 + -3.3
78,787 + PFR28_00069 0.29 -1.6
78,787 + PFR28_00069 0.29 +0.3
78,788 - PFR28_00069 0.29 +0.1
78,788 - PFR28_00069 0.29 -3.7
78,788 - PFR28_00069 0.29 +0.0

Or see this region's nucleotide sequence