Strain Fitness in Pseudomonas sp. RS175 around PFR28_00041

Experiment: Cytidine carbon 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00040 and PFR28_00041 are separated by 168 nucleotidesPFR28_00041 and PFR28_00042 are separated by 200 nucleotides PFR28_00040: PFR28_00040 - HTH-type transcriptional activator RhaS, at 48,850 to 49,788 _00040 PFR28_00041: PFR28_00041 - Leucine-responsive regulatory protein, at 49,957 to 50,466 _00041 PFR28_00042: PFR28_00042 - 1-aminocyclopropane-1-carboxylate deaminase, at 50,667 to 51,683 _00042 Position (kb) 49 50 51Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 49.054 kb on + strand, within PFR28_00040at 49.054 kb on + strand, within PFR28_00040at 49.054 kb on + strand, within PFR28_00040at 49.054 kb on + strand, within PFR28_00040at 49.054 kb on + strand, within PFR28_00040at 49.054 kb on + strand, within PFR28_00040at 49.054 kb on + strand, within PFR28_00040at 49.055 kb on - strand, within PFR28_00040at 49.055 kb on - strand, within PFR28_00040at 49.055 kb on - strand, within PFR28_00040at 49.055 kb on - strand, within PFR28_00040at 49.055 kb on - strand, within PFR28_00040at 49.060 kb on + strand, within PFR28_00040at 49.060 kb on + strand, within PFR28_00040at 49.060 kb on + strand, within PFR28_00040at 49.061 kb on - strand, within PFR28_00040at 49.076 kb on - strand, within PFR28_00040at 49.076 kb on - strand, within PFR28_00040at 49.150 kb on + strand, within PFR28_00040at 49.150 kb on + strand, within PFR28_00040at 49.151 kb on - strand, within PFR28_00040at 49.151 kb on - strand, within PFR28_00040at 49.151 kb on - strand, within PFR28_00040at 49.151 kb on - strand, within PFR28_00040at 49.151 kb on - strand, within PFR28_00040at 49.151 kb on - strand, within PFR28_00040at 49.240 kb on + strand, within PFR28_00040at 49.240 kb on + strand, within PFR28_00040at 49.240 kb on + strand, within PFR28_00040at 49.240 kb on + strand, within PFR28_00040at 49.240 kb on + strand, within PFR28_00040at 49.241 kb on - strand, within PFR28_00040at 49.241 kb on - strand, within PFR28_00040at 49.241 kb on - strand, within PFR28_00040at 49.241 kb on - strand, within PFR28_00040at 49.241 kb on - strand, within PFR28_00040at 49.241 kb on - strand, within PFR28_00040at 49.241 kb on - strand, within PFR28_00040at 49.241 kb on - strand, within PFR28_00040at 49.323 kb on - strand, within PFR28_00040at 49.323 kb on - strand, within PFR28_00040at 49.351 kb on + strand, within PFR28_00040at 49.511 kb on + strand, within PFR28_00040at 49.511 kb on + strand, within PFR28_00040at 49.564 kb on + strand, within PFR28_00040at 49.564 kb on + strand, within PFR28_00040at 49.565 kb on - strand, within PFR28_00040at 49.565 kb on - strand, within PFR28_00040at 49.565 kb on - strand, within PFR28_00040at 49.565 kb on - strand, within PFR28_00040at 49.565 kb on - strand, within PFR28_00040at 49.565 kb on - strand, within PFR28_00040at 49.738 kb on + strandat 49.738 kb on + strandat 49.738 kb on + strandat 49.738 kb on + strandat 49.739 kb on - strandat 49.739 kb on - strandat 49.771 kb on + strandat 49.771 kb on + strandat 49.771 kb on + strandat 49.771 kb on + strandat 49.771 kb on + strandat 49.772 kb on - strandat 49.772 kb on - strandat 49.772 kb on - strandat 49.772 kb on - strandat 49.772 kb on - strandat 49.772 kb on - strandat 49.772 kb on - strandat 49.786 kb on + strandat 49.787 kb on - strandat 49.830 kb on - strandat 49.858 kb on - strandat 50.034 kb on - strand, within PFR28_00041at 50.034 kb on - strand, within PFR28_00041at 50.034 kb on - strand, within PFR28_00041at 50.087 kb on - strand, within PFR28_00041at 50.099 kb on + strand, within PFR28_00041at 50.100 kb on - strand, within PFR28_00041at 50.451 kb on + strandat 50.550 kb on - strandat 50.568 kb on - strandat 50.570 kb on + strandat 50.570 kb on + strandat 50.570 kb on + strandat 50.570 kb on + strandat 50.571 kb on - strandat 50.571 kb on - strandat 50.571 kb on - strandat 50.685 kb on - strandat 50.769 kb on + strand, within PFR28_00042at 50.769 kb on + strand, within PFR28_00042at 50.770 kb on - strand, within PFR28_00042at 50.770 kb on - strand, within PFR28_00042at 50.770 kb on - strand, within PFR28_00042at 50.770 kb on - strand, within PFR28_00042at 50.835 kb on + strand, within PFR28_00042at 51.044 kb on - strand, within PFR28_00042at 51.165 kb on + strand, within PFR28_00042at 51.165 kb on + strand, within PFR28_00042at 51.240 kb on + strand, within PFR28_00042at 51.240 kb on + strand, within PFR28_00042at 51.241 kb on - strand, within PFR28_00042

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine carbon 10 mM
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49,054 + PFR28_00040 0.22 +0.5
49,054 + PFR28_00040 0.22 -0.1
49,054 + PFR28_00040 0.22 -0.4
49,054 + PFR28_00040 0.22 -0.5
49,054 + PFR28_00040 0.22 -0.2
49,054 + PFR28_00040 0.22 -1.4
49,054 + PFR28_00040 0.22 -0.2
49,055 - PFR28_00040 0.22 +1.0
49,055 - PFR28_00040 0.22 -0.5
49,055 - PFR28_00040 0.22 +0.3
49,055 - PFR28_00040 0.22 -0.7
49,055 - PFR28_00040 0.22 -0.7
49,060 + PFR28_00040 0.22 -0.8
49,060 + PFR28_00040 0.22 +0.7
49,060 + PFR28_00040 0.22 +0.7
49,061 - PFR28_00040 0.22 +0.6
49,076 - PFR28_00040 0.24 +0.4
49,076 - PFR28_00040 0.24 +1.2
49,150 + PFR28_00040 0.32 +0.9
49,150 + PFR28_00040 0.32 -1.0
49,151 - PFR28_00040 0.32 +0.3
49,151 - PFR28_00040 0.32 -1.1
49,151 - PFR28_00040 0.32 +1.0
49,151 - PFR28_00040 0.32 +1.2
49,151 - PFR28_00040 0.32 +0.4
49,151 - PFR28_00040 0.32 -0.1
49,240 + PFR28_00040 0.42 +0.1
49,240 + PFR28_00040 0.42 +0.1
49,240 + PFR28_00040 0.42 +0.6
49,240 + PFR28_00040 0.42 +0.8
49,240 + PFR28_00040 0.42 -3.0
49,241 - PFR28_00040 0.42 +0.4
49,241 - PFR28_00040 0.42 -1.8
49,241 - PFR28_00040 0.42 +0.6
49,241 - PFR28_00040 0.42 -1.1
49,241 - PFR28_00040 0.42 +0.4
49,241 - PFR28_00040 0.42 +0.9
49,241 - PFR28_00040 0.42 -0.2
49,241 - PFR28_00040 0.42 +1.1
49,323 - PFR28_00040 0.50 -3.4
49,323 - PFR28_00040 0.50 +0.7
49,351 + PFR28_00040 0.53 -0.1
49,511 + PFR28_00040 0.70 +0.2
49,511 + PFR28_00040 0.70 +0.2
49,564 + PFR28_00040 0.76 +0.2
49,564 + PFR28_00040 0.76 +0.3
49,565 - PFR28_00040 0.76 -0.2
49,565 - PFR28_00040 0.76 +0.6
49,565 - PFR28_00040 0.76 -0.8
49,565 - PFR28_00040 0.76 -1.0
49,565 - PFR28_00040 0.76 +0.5
49,565 - PFR28_00040 0.76 +0.2
49,738 + -0.7
49,738 + -1.6
49,738 + +0.8
49,738 + -1.1
49,739 - +0.2
49,739 - -0.2
49,771 + -1.1
49,771 + -0.1
49,771 + -0.5
49,771 + -0.3
49,771 + -0.3
49,772 - +0.6
49,772 - +1.0
49,772 - +0.9
49,772 - -0.3
49,772 - +0.5
49,772 - -0.0
49,772 - +0.0
49,786 + +0.1
49,787 - +1.0
49,830 - -1.3
49,858 - +1.0
50,034 - PFR28_00041 0.15 -0.7
50,034 - PFR28_00041 0.15 -1.0
50,034 - PFR28_00041 0.15 -1.5
50,087 - PFR28_00041 0.25 -0.5
50,099 + PFR28_00041 0.28 +0.3
50,100 - PFR28_00041 0.28 +0.4
50,451 + +0.7
50,550 - +1.6
50,568 - +1.6
50,570 + -0.9
50,570 + -0.0
50,570 + +1.1
50,570 + +0.0
50,571 - +0.9
50,571 - +0.4
50,571 - +1.7
50,685 - +1.6
50,769 + PFR28_00042 0.10 +0.9
50,769 + PFR28_00042 0.10 +0.5
50,770 - PFR28_00042 0.10 +1.4
50,770 - PFR28_00042 0.10 +2.2
50,770 - PFR28_00042 0.10 +1.8
50,770 - PFR28_00042 0.10 +2.4
50,835 + PFR28_00042 0.17 +1.2
51,044 - PFR28_00042 0.37 +1.2
51,165 + PFR28_00042 0.49 +0.2
51,165 + PFR28_00042 0.49 +0.6
51,240 + PFR28_00042 0.56 +1.3
51,240 + PFR28_00042 0.56 +0.3
51,241 - PFR28_00042 0.56 +1.6

Or see this region's nucleotide sequence