Strain Fitness in Serratia liquefaciens MT49 around IAI46_24730

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24725 and IAI46_24730 are separated by 9 nucleotidesIAI46_24730 and IAI46_24735 are separated by 240 nucleotides IAI46_24725: IAI46_24725 - L-threonine 3-dehydrogenase, at 5,277,206 to 5,278,231 _24725 IAI46_24730: IAI46_24730 - glycine C-acetyltransferase, at 5,278,241 to 5,279,437 _24730 IAI46_24735: IAI46_24735 - ADP-glyceromanno-heptose 6-epimerase, at 5,279,678 to 5,280,607 _24735 Position (kb) 5278 5279 5280Strain fitness (log2 ratio) -2 -1 0 1 2at 5277.295 kb on + strandat 5277.295 kb on + strandat 5277.295 kb on + strandat 5277.296 kb on - strandat 5277.301 kb on + strandat 5277.302 kb on - strandat 5277.343 kb on + strand, within IAI46_24725at 5277.343 kb on + strand, within IAI46_24725at 5277.343 kb on + strand, within IAI46_24725at 5277.344 kb on - strand, within IAI46_24725at 5277.344 kb on - strand, within IAI46_24725at 5277.344 kb on - strand, within IAI46_24725at 5277.344 kb on - strand, within IAI46_24725at 5277.345 kb on + strand, within IAI46_24725at 5277.345 kb on + strand, within IAI46_24725at 5277.372 kb on + strand, within IAI46_24725at 5277.427 kb on + strand, within IAI46_24725at 5277.428 kb on - strand, within IAI46_24725at 5277.428 kb on - strand, within IAI46_24725at 5277.458 kb on - strand, within IAI46_24725at 5277.458 kb on - strand, within IAI46_24725at 5277.653 kb on - strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.687 kb on - strand, within IAI46_24725at 5277.817 kb on + strand, within IAI46_24725at 5277.817 kb on + strand, within IAI46_24725at 5277.818 kb on - strand, within IAI46_24725at 5277.861 kb on + strand, within IAI46_24725at 5277.862 kb on - strand, within IAI46_24725at 5277.862 kb on - strand, within IAI46_24725at 5277.961 kb on + strand, within IAI46_24725at 5278.038 kb on + strand, within IAI46_24725at 5278.039 kb on - strand, within IAI46_24725at 5278.057 kb on + strand, within IAI46_24725at 5278.057 kb on + strand, within IAI46_24725at 5278.097 kb on - strand, within IAI46_24725at 5278.098 kb on + strand, within IAI46_24725at 5278.098 kb on + strand, within IAI46_24725at 5278.098 kb on + strand, within IAI46_24725at 5278.098 kb on + strand, within IAI46_24725at 5278.098 kb on + strand, within IAI46_24725at 5278.099 kb on - strand, within IAI46_24725at 5278.099 kb on - strand, within IAI46_24725at 5278.099 kb on - strand, within IAI46_24725at 5278.099 kb on - strand, within IAI46_24725at 5278.099 kb on - strand, within IAI46_24725at 5278.099 kb on - strand, within IAI46_24725at 5278.099 kb on - strand, within IAI46_24725at 5278.102 kb on + strand, within IAI46_24725at 5278.102 kb on + strand, within IAI46_24725at 5278.102 kb on + strand, within IAI46_24725at 5278.102 kb on + strand, within IAI46_24725at 5278.103 kb on - strand, within IAI46_24725at 5278.103 kb on - strand, within IAI46_24725at 5278.142 kb on - strandat 5278.238 kb on - strandat 5278.243 kb on - strandat 5278.243 kb on - strandat 5278.312 kb on + strandat 5278.313 kb on - strandat 5278.334 kb on - strandat 5278.334 kb on - strandat 5278.368 kb on + strand, within IAI46_24730at 5278.386 kb on + strand, within IAI46_24730at 5278.386 kb on + strand, within IAI46_24730at 5278.386 kb on + strand, within IAI46_24730at 5278.386 kb on + strand, within IAI46_24730at 5278.386 kb on + strand, within IAI46_24730at 5278.386 kb on + strand, within IAI46_24730at 5278.386 kb on + strand, within IAI46_24730at 5278.386 kb on + strand, within IAI46_24730at 5278.386 kb on + strand, within IAI46_24730at 5278.386 kb on + strand, within IAI46_24730at 5278.386 kb on + strand, within IAI46_24730at 5278.387 kb on - strand, within IAI46_24730at 5278.387 kb on - strand, within IAI46_24730at 5278.387 kb on - strand, within IAI46_24730at 5278.387 kb on - strand, within IAI46_24730at 5278.387 kb on - strand, within IAI46_24730at 5278.387 kb on - strand, within IAI46_24730at 5278.387 kb on - strand, within IAI46_24730at 5278.387 kb on - strand, within IAI46_24730at 5278.575 kb on - strand, within IAI46_24730at 5278.626 kb on + strand, within IAI46_24730at 5278.627 kb on - strand, within IAI46_24730at 5278.627 kb on - strand, within IAI46_24730at 5278.627 kb on - strand, within IAI46_24730at 5278.679 kb on - strand, within IAI46_24730at 5278.681 kb on - strand, within IAI46_24730at 5278.718 kb on - strand, within IAI46_24730at 5278.755 kb on + strand, within IAI46_24730at 5278.755 kb on + strand, within IAI46_24730at 5278.830 kb on + strand, within IAI46_24730at 5278.830 kb on + strand, within IAI46_24730at 5278.831 kb on - strand, within IAI46_24730at 5278.966 kb on + strand, within IAI46_24730at 5278.967 kb on - strand, within IAI46_24730at 5278.980 kb on + strand, within IAI46_24730at 5279.050 kb on + strand, within IAI46_24730at 5279.051 kb on - strand, within IAI46_24730at 5279.116 kb on - strand, within IAI46_24730at 5279.170 kb on + strand, within IAI46_24730at 5279.170 kb on + strand, within IAI46_24730at 5279.170 kb on + strand, within IAI46_24730at 5279.171 kb on - strand, within IAI46_24730at 5279.171 kb on - strand, within IAI46_24730at 5279.194 kb on + strand, within IAI46_24730at 5279.283 kb on + strand, within IAI46_24730at 5279.283 kb on + strand, within IAI46_24730at 5279.332 kb on + strandat 5279.353 kb on + strandat 5279.353 kb on + strandat 5279.353 kb on + strandat 5279.354 kb on - strandat 5279.354 kb on - strandat 5279.356 kb on + strandat 5279.356 kb on + strandat 5279.357 kb on - strandat 5279.471 kb on + strandat 5279.471 kb on + strandat 5279.471 kb on + strandat 5279.518 kb on + strandat 5279.519 kb on - strandat 5279.537 kb on - strandat 5279.549 kb on + strandat 5279.549 kb on + strandat 5279.550 kb on - strandat 5279.550 kb on - strandat 5279.550 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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5,277,295 + -0.6
5,277,295 + -0.3
5,277,295 + +0.5
5,277,296 - +1.2
5,277,301 + -2.5
5,277,302 - -1.0
5,277,343 + IAI46_24725 0.13 +0.4
5,277,343 + IAI46_24725 0.13 +0.7
5,277,343 + IAI46_24725 0.13 +0.2
5,277,344 - IAI46_24725 0.13 +0.2
5,277,344 - IAI46_24725 0.13 +0.3
5,277,344 - IAI46_24725 0.13 +0.6
5,277,344 - IAI46_24725 0.13 -0.4
5,277,345 + IAI46_24725 0.14 +0.9
5,277,345 + IAI46_24725 0.14 +0.5
5,277,372 + IAI46_24725 0.16 +0.4
5,277,427 + IAI46_24725 0.22 +0.5
5,277,428 - IAI46_24725 0.22 +0.2
5,277,428 - IAI46_24725 0.22 -0.1
5,277,458 - IAI46_24725 0.25 -0.5
5,277,458 - IAI46_24725 0.25 +0.1
5,277,653 - IAI46_24725 0.44 -1.1
5,277,682 + IAI46_24725 0.46 +0.2
5,277,682 + IAI46_24725 0.46 -0.2
5,277,682 + IAI46_24725 0.46 +0.2
5,277,682 + IAI46_24725 0.46 +0.5
5,277,682 + IAI46_24725 0.46 +0.4
5,277,682 + IAI46_24725 0.46 +0.1
5,277,682 + IAI46_24725 0.46 +0.8
5,277,682 + IAI46_24725 0.46 +0.0
5,277,682 + IAI46_24725 0.46 -0.1
5,277,682 + IAI46_24725 0.46 +0.6
5,277,682 + IAI46_24725 0.46 +0.9
5,277,682 + IAI46_24725 0.46 +0.6
5,277,682 + IAI46_24725 0.46 -0.3
5,277,682 + IAI46_24725 0.46 -0.3
5,277,682 + IAI46_24725 0.46 -1.8
5,277,683 - IAI46_24725 0.46 -0.1
5,277,683 - IAI46_24725 0.46 -0.1
5,277,683 - IAI46_24725 0.46 -0.3
5,277,683 - IAI46_24725 0.46 -0.7
5,277,683 - IAI46_24725 0.46 +0.4
5,277,683 - IAI46_24725 0.46 +0.1
5,277,683 - IAI46_24725 0.46 +1.9
5,277,683 - IAI46_24725 0.46 +0.8
5,277,683 - IAI46_24725 0.46 +0.1
5,277,683 - IAI46_24725 0.46 +0.5
5,277,687 - IAI46_24725 0.47 +0.2
5,277,817 + IAI46_24725 0.60 +0.6
5,277,817 + IAI46_24725 0.60 -0.3
5,277,818 - IAI46_24725 0.60 -0.6
5,277,861 + IAI46_24725 0.64 +0.2
5,277,862 - IAI46_24725 0.64 -0.5
5,277,862 - IAI46_24725 0.64 +0.4
5,277,961 + IAI46_24725 0.74 +0.9
5,278,038 + IAI46_24725 0.81 -0.3
5,278,039 - IAI46_24725 0.81 +0.1
5,278,057 + IAI46_24725 0.83 -1.3
5,278,057 + IAI46_24725 0.83 -0.4
5,278,097 - IAI46_24725 0.87 +0.5
5,278,098 + IAI46_24725 0.87 -0.1
5,278,098 + IAI46_24725 0.87 +0.2
5,278,098 + IAI46_24725 0.87 +0.7
5,278,098 + IAI46_24725 0.87 +1.2
5,278,098 + IAI46_24725 0.87 -0.0
5,278,099 - IAI46_24725 0.87 -0.4
5,278,099 - IAI46_24725 0.87 +1.1
5,278,099 - IAI46_24725 0.87 +0.8
5,278,099 - IAI46_24725 0.87 +0.6
5,278,099 - IAI46_24725 0.87 -0.3
5,278,099 - IAI46_24725 0.87 -0.2
5,278,099 - IAI46_24725 0.87 -0.3
5,278,102 + IAI46_24725 0.87 +0.3
5,278,102 + IAI46_24725 0.87 +0.3
5,278,102 + IAI46_24725 0.87 +0.0
5,278,102 + IAI46_24725 0.87 +0.5
5,278,103 - IAI46_24725 0.87 -0.6
5,278,103 - IAI46_24725 0.87 +0.5
5,278,142 - +0.2
5,278,238 - +1.1
5,278,243 - +0.7
5,278,243 - -0.2
5,278,312 + +0.2
5,278,313 - -0.2
5,278,334 - -0.4
5,278,334 - +0.3
5,278,368 + IAI46_24730 0.11 +0.6
5,278,386 + IAI46_24730 0.12 -0.8
5,278,386 + IAI46_24730 0.12 -0.1
5,278,386 + IAI46_24730 0.12 +0.0
5,278,386 + IAI46_24730 0.12 +0.3
5,278,386 + IAI46_24730 0.12 +0.1
5,278,386 + IAI46_24730 0.12 -0.4
5,278,386 + IAI46_24730 0.12 -1.2
5,278,386 + IAI46_24730 0.12 -0.5
5,278,386 + IAI46_24730 0.12 -0.4
5,278,386 + IAI46_24730 0.12 +0.4
5,278,386 + IAI46_24730 0.12 +0.2
5,278,387 - IAI46_24730 0.12 +0.2
5,278,387 - IAI46_24730 0.12 -0.4
5,278,387 - IAI46_24730 0.12 +0.4
5,278,387 - IAI46_24730 0.12 -0.1
5,278,387 - IAI46_24730 0.12 +0.5
5,278,387 - IAI46_24730 0.12 -0.1
5,278,387 - IAI46_24730 0.12 -0.6
5,278,387 - IAI46_24730 0.12 +0.5
5,278,575 - IAI46_24730 0.28 +0.4
5,278,626 + IAI46_24730 0.32 -0.2
5,278,627 - IAI46_24730 0.32 +0.7
5,278,627 - IAI46_24730 0.32 +0.3
5,278,627 - IAI46_24730 0.32 +1.1
5,278,679 - IAI46_24730 0.37 -0.2
5,278,681 - IAI46_24730 0.37 -0.3
5,278,718 - IAI46_24730 0.40 +0.3
5,278,755 + IAI46_24730 0.43 +0.7
5,278,755 + IAI46_24730 0.43 +0.2
5,278,830 + IAI46_24730 0.49 +1.2
5,278,830 + IAI46_24730 0.49 +0.4
5,278,831 - IAI46_24730 0.49 +0.2
5,278,966 + IAI46_24730 0.61 -0.5
5,278,967 - IAI46_24730 0.61 -1.9
5,278,980 + IAI46_24730 0.62 +1.4
5,279,050 + IAI46_24730 0.68 +0.5
5,279,051 - IAI46_24730 0.68 -0.7
5,279,116 - IAI46_24730 0.73 -0.1
5,279,170 + IAI46_24730 0.78 -1.9
5,279,170 + IAI46_24730 0.78 +0.1
5,279,170 + IAI46_24730 0.78 -0.9
5,279,171 - IAI46_24730 0.78 +1.3
5,279,171 - IAI46_24730 0.78 -0.8
5,279,194 + IAI46_24730 0.80 +0.5
5,279,283 + IAI46_24730 0.87 +0.9
5,279,283 + IAI46_24730 0.87 -0.2
5,279,332 + +0.7
5,279,353 + +0.2
5,279,353 + -0.0
5,279,353 + -0.1
5,279,354 - -0.1
5,279,354 - +1.3
5,279,356 + +0.2
5,279,356 + +0.4
5,279,357 - -0.9
5,279,471 + +0.2
5,279,471 + -0.5
5,279,471 + +0.8
5,279,518 + -0.8
5,279,519 - -0.2
5,279,537 - +0.8
5,279,549 + -0.1
5,279,549 + -0.1
5,279,550 - +0.1
5,279,550 - -0.1
5,279,550 - +0.2

Or see this region's nucleotide sequence