Strain Fitness in Serratia liquefaciens MT49 around IAI46_21735

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_21725 and IAI46_21730 are separated by 154 nucleotidesIAI46_21730 and IAI46_21735 are separated by 27 nucleotidesIAI46_21735 and IAI46_21740 are separated by 108 nucleotides IAI46_21725: IAI46_21725 - cystathionine beta-lyase, at 4,618,723 to 4,619,919 _21725 IAI46_21730: IAI46_21730 - DedA family protein, at 4,620,074 to 4,620,736 _21730 IAI46_21735: IAI46_21735 - LysR family transcriptional regulator, at 4,620,764 to 4,621,684 _21735 IAI46_21740: IAI46_21740 - NAD(P)-dependent alcohol dehydrogenase, at 4,621,793 to 4,622,821 _21740 Position (kb) 4620 4621 4622Strain fitness (log2 ratio) -2 -1 0 1at 4619.813 kb on + strandat 4619.814 kb on - strandat 4619.814 kb on - strandat 4619.814 kb on - strandat 4619.917 kb on + strandat 4619.918 kb on - strandat 4619.948 kb on - strandat 4619.971 kb on + strandat 4619.971 kb on + strandat 4619.976 kb on + strandat 4619.976 kb on + strandat 4619.976 kb on + strandat 4619.979 kb on + strandat 4619.986 kb on - strandat 4619.990 kb on + strandat 4619.991 kb on - strandat 4619.998 kb on + strandat 4619.998 kb on + strandat 4620.072 kb on + strandat 4620.073 kb on - strandat 4620.081 kb on + strandat 4620.081 kb on + strandat 4620.082 kb on - strandat 4620.082 kb on - strandat 4620.082 kb on - strandat 4620.085 kb on - strandat 4620.159 kb on - strand, within IAI46_21730at 4620.181 kb on - strand, within IAI46_21730at 4620.199 kb on - strand, within IAI46_21730at 4620.332 kb on + strand, within IAI46_21730at 4620.541 kb on + strand, within IAI46_21730at 4620.541 kb on + strand, within IAI46_21730at 4620.541 kb on + strand, within IAI46_21730at 4620.542 kb on - strand, within IAI46_21730at 4620.590 kb on + strand, within IAI46_21730at 4620.623 kb on + strand, within IAI46_21730at 4620.703 kb on + strandat 4620.703 kb on + strandat 4620.704 kb on - strandat 4620.766 kb on - strandat 4620.817 kb on + strandat 4620.960 kb on - strand, within IAI46_21735at 4621.023 kb on - strand, within IAI46_21735at 4621.104 kb on + strand, within IAI46_21735at 4621.104 kb on + strand, within IAI46_21735at 4621.104 kb on + strand, within IAI46_21735at 4621.105 kb on - strand, within IAI46_21735at 4621.105 kb on - strand, within IAI46_21735at 4621.168 kb on - strand, within IAI46_21735at 4621.168 kb on - strand, within IAI46_21735at 4621.192 kb on + strand, within IAI46_21735at 4621.343 kb on - strand, within IAI46_21735at 4621.450 kb on + strand, within IAI46_21735at 4621.454 kb on + strand, within IAI46_21735at 4621.455 kb on - strand, within IAI46_21735at 4621.455 kb on - strand, within IAI46_21735at 4621.485 kb on + strand, within IAI46_21735at 4621.655 kb on + strandat 4621.743 kb on - strandat 4621.752 kb on - strandat 4621.754 kb on + strandat 4621.755 kb on - strandat 4621.771 kb on - strandat 4621.867 kb on - strandat 4621.959 kb on + strand, within IAI46_21740at 4621.959 kb on + strand, within IAI46_21740at 4621.960 kb on - strand, within IAI46_21740at 4622.102 kb on + strand, within IAI46_21740at 4622.102 kb on + strand, within IAI46_21740at 4622.103 kb on - strand, within IAI46_21740at 4622.103 kb on - strand, within IAI46_21740at 4622.107 kb on + strand, within IAI46_21740at 4622.108 kb on - strand, within IAI46_21740at 4622.155 kb on + strand, within IAI46_21740at 4622.168 kb on + strand, within IAI46_21740at 4622.169 kb on - strand, within IAI46_21740at 4622.313 kb on + strand, within IAI46_21740at 4622.313 kb on + strand, within IAI46_21740at 4622.378 kb on + strand, within IAI46_21740at 4622.378 kb on + strand, within IAI46_21740at 4622.378 kb on + strand, within IAI46_21740at 4622.378 kb on + strand, within IAI46_21740at 4622.378 kb on + strand, within IAI46_21740at 4622.378 kb on + strand, within IAI46_21740at 4622.378 kb on + strand, within IAI46_21740at 4622.379 kb on - strand, within IAI46_21740at 4622.379 kb on - strand, within IAI46_21740at 4622.379 kb on - strand, within IAI46_21740at 4622.379 kb on - strand, within IAI46_21740at 4622.379 kb on - strand, within IAI46_21740at 4622.379 kb on - strand, within IAI46_21740at 4622.379 kb on - strand, within IAI46_21740at 4622.379 kb on - strand, within IAI46_21740at 4622.382 kb on + strand, within IAI46_21740at 4622.382 kb on + strand, within IAI46_21740at 4622.382 kb on + strand, within IAI46_21740at 4622.382 kb on + strand, within IAI46_21740at 4622.383 kb on - strand, within IAI46_21740at 4622.383 kb on - strand, within IAI46_21740at 4622.383 kb on - strand, within IAI46_21740at 4622.383 kb on - strand, within IAI46_21740at 4622.477 kb on + strand, within IAI46_21740at 4622.477 kb on + strand, within IAI46_21740at 4622.478 kb on - strand, within IAI46_21740at 4622.534 kb on - strand, within IAI46_21740

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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4,619,813 + +0.1
4,619,814 - -0.1
4,619,814 - -0.4
4,619,814 - +0.2
4,619,917 + +0.1
4,619,918 - +0.6
4,619,948 - -0.1
4,619,971 + -0.7
4,619,971 + +0.7
4,619,976 + +0.3
4,619,976 + +0.7
4,619,976 + +0.7
4,619,979 + -0.3
4,619,986 - +0.3
4,619,990 + +0.7
4,619,991 - +0.7
4,619,998 + +0.2
4,619,998 + +0.1
4,620,072 + +0.8
4,620,073 - +0.8
4,620,081 + -0.4
4,620,081 + +0.5
4,620,082 - +0.7
4,620,082 - -0.6
4,620,082 - -0.2
4,620,085 - -0.6
4,620,159 - IAI46_21730 0.13 +1.4
4,620,181 - IAI46_21730 0.16 +0.6
4,620,199 - IAI46_21730 0.19 -0.2
4,620,332 + IAI46_21730 0.39 +0.2
4,620,541 + IAI46_21730 0.70 -1.2
4,620,541 + IAI46_21730 0.70 +0.4
4,620,541 + IAI46_21730 0.70 +0.2
4,620,542 - IAI46_21730 0.71 +0.6
4,620,590 + IAI46_21730 0.78 +0.4
4,620,623 + IAI46_21730 0.83 -0.4
4,620,703 + -0.0
4,620,703 + -0.0
4,620,704 - +0.2
4,620,766 - +1.4
4,620,817 + +0.4
4,620,960 - IAI46_21735 0.21 -1.1
4,621,023 - IAI46_21735 0.28 -1.9
4,621,104 + IAI46_21735 0.37 +1.2
4,621,104 + IAI46_21735 0.37 -0.1
4,621,104 + IAI46_21735 0.37 +0.3
4,621,105 - IAI46_21735 0.37 -1.9
4,621,105 - IAI46_21735 0.37 -0.6
4,621,168 - IAI46_21735 0.44 +0.6
4,621,168 - IAI46_21735 0.44 +0.9
4,621,192 + IAI46_21735 0.46 +0.1
4,621,343 - IAI46_21735 0.63 +0.4
4,621,450 + IAI46_21735 0.74 +0.8
4,621,454 + IAI46_21735 0.75 +1.0
4,621,455 - IAI46_21735 0.75 -0.4
4,621,455 - IAI46_21735 0.75 -0.3
4,621,485 + IAI46_21735 0.78 +0.3
4,621,655 + +1.0
4,621,743 - -0.8
4,621,752 - +0.5
4,621,754 + +0.2
4,621,755 - -0.2
4,621,771 - +0.1
4,621,867 - -0.4
4,621,959 + IAI46_21740 0.16 -0.4
4,621,959 + IAI46_21740 0.16 -0.4
4,621,960 - IAI46_21740 0.16 +0.2
4,622,102 + IAI46_21740 0.30 +0.3
4,622,102 + IAI46_21740 0.30 -0.6
4,622,103 - IAI46_21740 0.30 +0.9
4,622,103 - IAI46_21740 0.30 -0.8
4,622,107 + IAI46_21740 0.31 -1.4
4,622,108 - IAI46_21740 0.31 +0.3
4,622,155 + IAI46_21740 0.35 +0.3
4,622,168 + IAI46_21740 0.36 +0.0
4,622,169 - IAI46_21740 0.37 -0.1
4,622,313 + IAI46_21740 0.51 +0.3
4,622,313 + IAI46_21740 0.51 -0.4
4,622,378 + IAI46_21740 0.57 +0.3
4,622,378 + IAI46_21740 0.57 +1.0
4,622,378 + IAI46_21740 0.57 -0.1
4,622,378 + IAI46_21740 0.57 +0.5
4,622,378 + IAI46_21740 0.57 -0.4
4,622,378 + IAI46_21740 0.57 +1.2
4,622,378 + IAI46_21740 0.57 +0.1
4,622,379 - IAI46_21740 0.57 -0.7
4,622,379 - IAI46_21740 0.57 +0.9
4,622,379 - IAI46_21740 0.57 -2.5
4,622,379 - IAI46_21740 0.57 -0.0
4,622,379 - IAI46_21740 0.57 -0.2
4,622,379 - IAI46_21740 0.57 +0.6
4,622,379 - IAI46_21740 0.57 +0.4
4,622,379 - IAI46_21740 0.57 -1.0
4,622,382 + IAI46_21740 0.57 +0.1
4,622,382 + IAI46_21740 0.57 -0.5
4,622,382 + IAI46_21740 0.57 -1.0
4,622,382 + IAI46_21740 0.57 -0.3
4,622,383 - IAI46_21740 0.57 -0.6
4,622,383 - IAI46_21740 0.57 +0.2
4,622,383 - IAI46_21740 0.57 +0.3
4,622,383 - IAI46_21740 0.57 -0.8
4,622,477 + IAI46_21740 0.66 +0.4
4,622,477 + IAI46_21740 0.66 -0.6
4,622,478 - IAI46_21740 0.67 -1.1
4,622,534 - IAI46_21740 0.72 +0.2

Or see this region's nucleotide sequence