Strain Fitness in Serratia liquefaciens MT49 around IAI46_21685

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_21680 and IAI46_21685 are separated by 65 nucleotidesIAI46_21685 and IAI46_21690 overlap by 1 nucleotides IAI46_21680: IAI46_21680 - carbohydrate porin, at 4,609,947 to 4,611,356 _21680 IAI46_21685: IAI46_21685 - PTS sucrose transporter subunit IIBC, at 4,611,422 to 4,612,792 _21685 IAI46_21690: IAI46_21690 - sucrose-6-phosphate hydrolase, at 4,612,792 to 4,614,201 _21690 Position (kb) 4611 4612 4613Strain fitness (log2 ratio) -3 -2 -1 0 1at 4610.547 kb on + strand, within IAI46_21680at 4610.547 kb on + strand, within IAI46_21680at 4610.548 kb on - strand, within IAI46_21680at 4610.548 kb on - strand, within IAI46_21680at 4610.548 kb on - strand, within IAI46_21680at 4610.613 kb on + strand, within IAI46_21680at 4610.614 kb on - strand, within IAI46_21680at 4610.631 kb on + strand, within IAI46_21680at 4610.632 kb on - strand, within IAI46_21680at 4610.632 kb on - strand, within IAI46_21680at 4610.632 kb on - strand, within IAI46_21680at 4610.632 kb on - strand, within IAI46_21680at 4610.633 kb on + strand, within IAI46_21680at 4610.633 kb on + strand, within IAI46_21680at 4610.633 kb on + strand, within IAI46_21680at 4610.633 kb on + strand, within IAI46_21680at 4610.633 kb on + strand, within IAI46_21680at 4610.633 kb on + strand, within IAI46_21680at 4610.634 kb on - strand, within IAI46_21680at 4610.634 kb on - strand, within IAI46_21680at 4610.634 kb on - strand, within IAI46_21680at 4610.637 kb on + strand, within IAI46_21680at 4610.637 kb on + strand, within IAI46_21680at 4610.637 kb on + strand, within IAI46_21680at 4610.637 kb on + strand, within IAI46_21680at 4610.638 kb on - strand, within IAI46_21680at 4610.638 kb on - strand, within IAI46_21680at 4610.663 kb on + strand, within IAI46_21680at 4610.663 kb on + strand, within IAI46_21680at 4610.664 kb on - strand, within IAI46_21680at 4610.712 kb on + strand, within IAI46_21680at 4610.713 kb on - strand, within IAI46_21680at 4610.727 kb on - strand, within IAI46_21680at 4610.727 kb on - strand, within IAI46_21680at 4610.744 kb on + strand, within IAI46_21680at 4610.745 kb on - strand, within IAI46_21680at 4610.769 kb on + strand, within IAI46_21680at 4610.770 kb on - strand, within IAI46_21680at 4610.889 kb on + strand, within IAI46_21680at 4610.889 kb on + strand, within IAI46_21680at 4610.889 kb on + strand, within IAI46_21680at 4610.890 kb on - strand, within IAI46_21680at 4610.890 kb on - strand, within IAI46_21680at 4610.890 kb on - strand, within IAI46_21680at 4610.896 kb on - strand, within IAI46_21680at 4611.019 kb on - strand, within IAI46_21680at 4611.090 kb on + strand, within IAI46_21680at 4611.090 kb on + strand, within IAI46_21680at 4611.090 kb on + strand, within IAI46_21680at 4611.090 kb on + strand, within IAI46_21680at 4611.091 kb on - strand, within IAI46_21680at 4611.091 kb on - strand, within IAI46_21680at 4611.092 kb on + strand, within IAI46_21680at 4611.092 kb on + strand, within IAI46_21680at 4611.092 kb on + strand, within IAI46_21680at 4611.092 kb on + strand, within IAI46_21680at 4611.093 kb on - strand, within IAI46_21680at 4611.093 kb on - strand, within IAI46_21680at 4611.093 kb on - strand, within IAI46_21680at 4611.093 kb on - strand, within IAI46_21680at 4611.093 kb on - strand, within IAI46_21680at 4611.093 kb on - strand, within IAI46_21680at 4611.093 kb on - strand, within IAI46_21680at 4611.096 kb on + strand, within IAI46_21680at 4611.096 kb on + strand, within IAI46_21680at 4611.096 kb on + strand, within IAI46_21680at 4611.096 kb on + strand, within IAI46_21680at 4611.097 kb on - strand, within IAI46_21680at 4611.097 kb on - strand, within IAI46_21680at 4611.097 kb on - strand, within IAI46_21680at 4611.097 kb on - strand, within IAI46_21680at 4611.177 kb on + strand, within IAI46_21680at 4611.177 kb on + strand, within IAI46_21680at 4611.177 kb on + strand, within IAI46_21680at 4611.178 kb on - strand, within IAI46_21680at 4611.197 kb on + strand, within IAI46_21680at 4611.198 kb on - strand, within IAI46_21680at 4611.198 kb on - strand, within IAI46_21680at 4611.215 kb on + strand, within IAI46_21680at 4611.215 kb on + strand, within IAI46_21680at 4611.215 kb on + strand, within IAI46_21680at 4611.216 kb on - strandat 4611.258 kb on + strandat 4611.258 kb on + strandat 4611.259 kb on - strandat 4611.296 kb on - strandat 4611.322 kb on - strandat 4611.328 kb on + strandat 4611.329 kb on - strandat 4611.329 kb on - strandat 4611.406 kb on + strandat 4611.407 kb on - strandat 4611.429 kb on + strandat 4611.429 kb on + strandat 4611.429 kb on + strandat 4611.430 kb on - strandat 4611.430 kb on - strandat 4611.478 kb on + strandat 4611.540 kb on + strandat 4611.540 kb on + strandat 4611.541 kb on - strandat 4611.718 kb on + strand, within IAI46_21685at 4611.718 kb on + strand, within IAI46_21685at 4611.718 kb on + strand, within IAI46_21685at 4611.719 kb on - strand, within IAI46_21685at 4611.754 kb on + strand, within IAI46_21685at 4611.754 kb on + strand, within IAI46_21685at 4611.901 kb on - strand, within IAI46_21685at 4611.951 kb on - strand, within IAI46_21685at 4612.081 kb on - strand, within IAI46_21685at 4612.081 kb on - strand, within IAI46_21685at 4612.081 kb on - strand, within IAI46_21685at 4612.109 kb on - strand, within IAI46_21685at 4612.109 kb on - strand, within IAI46_21685at 4612.117 kb on - strand, within IAI46_21685at 4612.135 kb on + strand, within IAI46_21685at 4612.135 kb on + strand, within IAI46_21685at 4612.136 kb on - strand, within IAI46_21685at 4612.319 kb on + strand, within IAI46_21685at 4612.384 kb on + strand, within IAI46_21685at 4612.402 kb on + strand, within IAI46_21685at 4612.537 kb on + strand, within IAI46_21685at 4612.712 kb on + strandat 4612.712 kb on + strandat 4612.713 kb on - strandat 4612.713 kb on - strandat 4612.713 kb on - strandat 4612.713 kb on - strandat 4612.713 kb on - strandat 4612.714 kb on + strandat 4612.714 kb on + strandat 4612.714 kb on + strandat 4612.714 kb on + strandat 4612.714 kb on + strandat 4612.714 kb on + strandat 4612.715 kb on - strandat 4612.715 kb on - strandat 4612.802 kb on + strandat 4612.802 kb on + strandat 4612.803 kb on - strandat 4612.803 kb on - strandat 4612.926 kb on + strandat 4612.945 kb on + strand, within IAI46_21690at 4612.946 kb on - strand, within IAI46_21690at 4613.071 kb on + strand, within IAI46_21690at 4613.072 kb on - strand, within IAI46_21690at 4613.072 kb on - strand, within IAI46_21690at 4613.072 kb on - strand, within IAI46_21690at 4613.090 kb on - strand, within IAI46_21690at 4613.106 kb on - strand, within IAI46_21690at 4613.135 kb on - strand, within IAI46_21690at 4613.148 kb on - strand, within IAI46_21690at 4613.153 kb on - strand, within IAI46_21690at 4613.177 kb on - strand, within IAI46_21690at 4613.213 kb on - strand, within IAI46_21690at 4613.302 kb on + strand, within IAI46_21690at 4613.302 kb on + strand, within IAI46_21690at 4613.302 kb on + strand, within IAI46_21690at 4613.303 kb on - strand, within IAI46_21690at 4613.303 kb on - strand, within IAI46_21690at 4613.303 kb on - strand, within IAI46_21690at 4613.303 kb on - strand, within IAI46_21690at 4613.434 kb on + strand, within IAI46_21690at 4613.434 kb on + strand, within IAI46_21690at 4613.434 kb on + strand, within IAI46_21690at 4613.435 kb on - strand, within IAI46_21690at 4613.436 kb on + strand, within IAI46_21690at 4613.436 kb on + strand, within IAI46_21690at 4613.436 kb on + strand, within IAI46_21690at 4613.436 kb on + strand, within IAI46_21690at 4613.437 kb on - strand, within IAI46_21690at 4613.484 kb on + strand, within IAI46_21690at 4613.484 kb on + strand, within IAI46_21690at 4613.484 kb on + strand, within IAI46_21690at 4613.484 kb on + strand, within IAI46_21690at 4613.484 kb on + strand, within IAI46_21690at 4613.485 kb on - strand, within IAI46_21690at 4613.525 kb on - strand, within IAI46_21690at 4613.629 kb on + strand, within IAI46_21690at 4613.729 kb on - strand, within IAI46_21690at 4613.729 kb on - strand, within IAI46_21690at 4613.775 kb on + strand, within IAI46_21690

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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4,610,547 + IAI46_21680 0.43 -0.5
4,610,547 + IAI46_21680 0.43 +1.0
4,610,548 - IAI46_21680 0.43 +0.7
4,610,548 - IAI46_21680 0.43 -1.4
4,610,548 - IAI46_21680 0.43 +0.3
4,610,613 + IAI46_21680 0.47 -0.1
4,610,614 - IAI46_21680 0.47 +0.8
4,610,631 + IAI46_21680 0.49 +0.2
4,610,632 - IAI46_21680 0.49 +0.3
4,610,632 - IAI46_21680 0.49 -0.3
4,610,632 - IAI46_21680 0.49 -0.1
4,610,632 - IAI46_21680 0.49 +0.1
4,610,633 + IAI46_21680 0.49 -0.8
4,610,633 + IAI46_21680 0.49 +0.3
4,610,633 + IAI46_21680 0.49 -1.6
4,610,633 + IAI46_21680 0.49 -0.9
4,610,633 + IAI46_21680 0.49 -0.2
4,610,633 + IAI46_21680 0.49 -1.2
4,610,634 - IAI46_21680 0.49 -0.2
4,610,634 - IAI46_21680 0.49 +0.4
4,610,634 - IAI46_21680 0.49 +0.3
4,610,637 + IAI46_21680 0.49 -0.4
4,610,637 + IAI46_21680 0.49 +0.6
4,610,637 + IAI46_21680 0.49 +0.9
4,610,637 + IAI46_21680 0.49 +0.5
4,610,638 - IAI46_21680 0.49 +0.1
4,610,638 - IAI46_21680 0.49 +1.0
4,610,663 + IAI46_21680 0.51 +0.7
4,610,663 + IAI46_21680 0.51 -0.2
4,610,664 - IAI46_21680 0.51 -0.8
4,610,712 + IAI46_21680 0.54 +0.0
4,610,713 - IAI46_21680 0.54 +0.7
4,610,727 - IAI46_21680 0.55 +0.2
4,610,727 - IAI46_21680 0.55 +0.2
4,610,744 + IAI46_21680 0.57 -0.1
4,610,745 - IAI46_21680 0.57 +0.7
4,610,769 + IAI46_21680 0.58 +0.4
4,610,770 - IAI46_21680 0.58 +1.1
4,610,889 + IAI46_21680 0.67 +0.4
4,610,889 + IAI46_21680 0.67 +1.6
4,610,889 + IAI46_21680 0.67 +0.2
4,610,890 - IAI46_21680 0.67 -0.3
4,610,890 - IAI46_21680 0.67 +0.3
4,610,890 - IAI46_21680 0.67 +0.8
4,610,896 - IAI46_21680 0.67 +0.4
4,611,019 - IAI46_21680 0.76 -0.6
4,611,090 + IAI46_21680 0.81 +0.2
4,611,090 + IAI46_21680 0.81 +0.1
4,611,090 + IAI46_21680 0.81 +0.6
4,611,090 + IAI46_21680 0.81 -0.6
4,611,091 - IAI46_21680 0.81 +1.3
4,611,091 - IAI46_21680 0.81 -0.2
4,611,092 + IAI46_21680 0.81 +0.3
4,611,092 + IAI46_21680 0.81 -0.6
4,611,092 + IAI46_21680 0.81 +1.0
4,611,092 + IAI46_21680 0.81 +0.1
4,611,093 - IAI46_21680 0.81 -0.3
4,611,093 - IAI46_21680 0.81 +0.7
4,611,093 - IAI46_21680 0.81 -0.2
4,611,093 - IAI46_21680 0.81 -0.6
4,611,093 - IAI46_21680 0.81 -0.5
4,611,093 - IAI46_21680 0.81 -0.5
4,611,093 - IAI46_21680 0.81 +0.1
4,611,096 + IAI46_21680 0.81 +0.1
4,611,096 + IAI46_21680 0.81 +0.1
4,611,096 + IAI46_21680 0.81 +0.3
4,611,096 + IAI46_21680 0.81 +0.0
4,611,097 - IAI46_21680 0.82 +0.3
4,611,097 - IAI46_21680 0.82 +1.3
4,611,097 - IAI46_21680 0.82 -0.4
4,611,097 - IAI46_21680 0.82 -0.6
4,611,177 + IAI46_21680 0.87 +0.1
4,611,177 + IAI46_21680 0.87 -1.2
4,611,177 + IAI46_21680 0.87 +0.2
4,611,178 - IAI46_21680 0.87 -0.3
4,611,197 + IAI46_21680 0.89 +0.1
4,611,198 - IAI46_21680 0.89 +0.6
4,611,198 - IAI46_21680 0.89 +0.8
4,611,215 + IAI46_21680 0.90 +0.6
4,611,215 + IAI46_21680 0.90 -0.1
4,611,215 + IAI46_21680 0.90 +0.1
4,611,216 - -0.2
4,611,258 + -0.1
4,611,258 + -0.5
4,611,259 - +0.7
4,611,296 - +1.7
4,611,322 - +0.3
4,611,328 + -0.5
4,611,329 - +0.6
4,611,329 - +0.0
4,611,406 + -0.0
4,611,407 - -0.3
4,611,429 + -0.2
4,611,429 + -0.3
4,611,429 + -0.2
4,611,430 - +0.6
4,611,430 - +0.3
4,611,478 + -0.2
4,611,540 + +0.7
4,611,540 + +1.0
4,611,541 - +0.5
4,611,718 + IAI46_21685 0.22 +0.9
4,611,718 + IAI46_21685 0.22 +1.2
4,611,718 + IAI46_21685 0.22 -0.1
4,611,719 - IAI46_21685 0.22 +0.8
4,611,754 + IAI46_21685 0.24 +0.1
4,611,754 + IAI46_21685 0.24 +0.0
4,611,901 - IAI46_21685 0.35 +0.1
4,611,951 - IAI46_21685 0.39 +0.4
4,612,081 - IAI46_21685 0.48 +1.4
4,612,081 - IAI46_21685 0.48 +0.8
4,612,081 - IAI46_21685 0.48 +0.2
4,612,109 - IAI46_21685 0.50 +0.8
4,612,109 - IAI46_21685 0.50 -0.4
4,612,117 - IAI46_21685 0.51 +0.5
4,612,135 + IAI46_21685 0.52 +0.1
4,612,135 + IAI46_21685 0.52 -0.6
4,612,136 - IAI46_21685 0.52 +0.0
4,612,319 + IAI46_21685 0.65 -0.8
4,612,384 + IAI46_21685 0.70 -1.3
4,612,402 + IAI46_21685 0.71 +0.0
4,612,537 + IAI46_21685 0.81 +1.7
4,612,712 + +0.7
4,612,712 + +0.2
4,612,713 - +1.1
4,612,713 - -0.9
4,612,713 - +0.0
4,612,713 - -1.0
4,612,713 - -0.3
4,612,714 + +1.0
4,612,714 + +0.4
4,612,714 + +0.2
4,612,714 + +0.4
4,612,714 + +0.7
4,612,714 + -0.5
4,612,715 - +0.3
4,612,715 - +1.7
4,612,802 + +0.1
4,612,802 + -0.1
4,612,803 - -0.1
4,612,803 - -0.1
4,612,926 + +0.0
4,612,945 + IAI46_21690 0.11 +1.7
4,612,946 - IAI46_21690 0.11 -0.6
4,613,071 + IAI46_21690 0.20 +0.1
4,613,072 - IAI46_21690 0.20 +0.8
4,613,072 - IAI46_21690 0.20 +0.0
4,613,072 - IAI46_21690 0.20 +0.1
4,613,090 - IAI46_21690 0.21 +0.5
4,613,106 - IAI46_21690 0.22 +0.8
4,613,135 - IAI46_21690 0.24 +0.5
4,613,148 - IAI46_21690 0.25 +0.0
4,613,153 - IAI46_21690 0.26 -0.2
4,613,177 - IAI46_21690 0.27 -1.3
4,613,213 - IAI46_21690 0.30 +0.5
4,613,302 + IAI46_21690 0.36 -0.2
4,613,302 + IAI46_21690 0.36 -1.7
4,613,302 + IAI46_21690 0.36 +0.0
4,613,303 - IAI46_21690 0.36 -0.7
4,613,303 - IAI46_21690 0.36 -0.3
4,613,303 - IAI46_21690 0.36 -0.1
4,613,303 - IAI46_21690 0.36 -2.9
4,613,434 + IAI46_21690 0.46 +0.6
4,613,434 + IAI46_21690 0.46 +0.7
4,613,434 + IAI46_21690 0.46 -0.6
4,613,435 - IAI46_21690 0.46 -0.0
4,613,436 + IAI46_21690 0.46 -0.4
4,613,436 + IAI46_21690 0.46 -0.5
4,613,436 + IAI46_21690 0.46 -0.2
4,613,436 + IAI46_21690 0.46 -0.1
4,613,437 - IAI46_21690 0.46 -0.3
4,613,484 + IAI46_21690 0.49 +1.3
4,613,484 + IAI46_21690 0.49 -1.0
4,613,484 + IAI46_21690 0.49 +0.4
4,613,484 + IAI46_21690 0.49 +0.5
4,613,484 + IAI46_21690 0.49 +0.6
4,613,485 - IAI46_21690 0.49 -0.1
4,613,525 - IAI46_21690 0.52 -0.2
4,613,629 + IAI46_21690 0.59 +0.6
4,613,729 - IAI46_21690 0.66 +0.2
4,613,729 - IAI46_21690 0.66 +0.4
4,613,775 + IAI46_21690 0.70 +0.1

Or see this region's nucleotide sequence