Strain Fitness in Serratia liquefaciens MT49 around IAI46_18765

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18760 and IAI46_18765 are separated by 54 nucleotidesIAI46_18765 and IAI46_18770 are separated by 437 nucleotides IAI46_18760: IAI46_18760 - tRNA(Met) cytidine acetyltransferase, at 3,949,913 to 3,951,925 _18760 IAI46_18765: IAI46_18765 - neutral zinc metallopeptidase, at 3,951,980 to 3,952,846 _18765 IAI46_18770: IAI46_18770 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 3,953,284 to 3,953,997 _18770 Position (kb) 3951 3952 3953Strain fitness (log2 ratio) -2 -1 0 1 2at 3950.982 kb on - strand, within IAI46_18760at 3951.051 kb on + strand, within IAI46_18760at 3951.090 kb on + strand, within IAI46_18760at 3951.090 kb on + strand, within IAI46_18760at 3951.090 kb on + strand, within IAI46_18760at 3951.155 kb on + strand, within IAI46_18760at 3951.155 kb on + strand, within IAI46_18760at 3951.156 kb on - strand, within IAI46_18760at 3951.378 kb on - strand, within IAI46_18760at 3951.532 kb on + strand, within IAI46_18760at 3951.818 kb on - strandat 3951.830 kb on + strandat 3951.831 kb on - strandat 3951.901 kb on + strandat 3951.901 kb on + strandat 3951.902 kb on - strandat 3951.926 kb on - strandat 3951.926 kb on - strandat 3952.063 kb on + strandat 3952.195 kb on - strand, within IAI46_18765at 3952.354 kb on - strand, within IAI46_18765at 3952.354 kb on - strand, within IAI46_18765at 3952.354 kb on - strand, within IAI46_18765at 3952.421 kb on - strand, within IAI46_18765at 3952.421 kb on - strand, within IAI46_18765at 3952.422 kb on + strand, within IAI46_18765at 3952.423 kb on - strand, within IAI46_18765at 3952.423 kb on - strand, within IAI46_18765at 3952.423 kb on - strand, within IAI46_18765at 3952.423 kb on - strand, within IAI46_18765at 3952.423 kb on - strand, within IAI46_18765at 3952.446 kb on + strand, within IAI46_18765at 3952.503 kb on + strand, within IAI46_18765at 3952.503 kb on + strand, within IAI46_18765at 3952.503 kb on + strand, within IAI46_18765at 3952.503 kb on + strand, within IAI46_18765at 3952.503 kb on + strand, within IAI46_18765at 3952.504 kb on - strand, within IAI46_18765at 3952.504 kb on - strand, within IAI46_18765at 3952.540 kb on + strand, within IAI46_18765at 3952.540 kb on + strand, within IAI46_18765at 3952.565 kb on - strand, within IAI46_18765at 3952.565 kb on - strand, within IAI46_18765at 3952.594 kb on + strand, within IAI46_18765at 3952.698 kb on + strand, within IAI46_18765at 3952.698 kb on + strand, within IAI46_18765at 3952.847 kb on - strandat 3952.850 kb on + strandat 3952.850 kb on + strandat 3952.851 kb on - strandat 3952.851 kb on - strandat 3952.863 kb on - strandat 3952.878 kb on + strandat 3952.878 kb on + strandat 3952.879 kb on - strandat 3952.879 kb on - strandat 3952.879 kb on - strandat 3952.894 kb on + strandat 3952.941 kb on + strandat 3952.941 kb on + strandat 3952.941 kb on + strandat 3952.941 kb on + strandat 3952.950 kb on - strandat 3952.950 kb on - strandat 3952.950 kb on - strandat 3952.997 kb on + strandat 3953.009 kb on + strandat 3953.010 kb on - strandat 3953.010 kb on - strandat 3953.015 kb on + strandat 3953.016 kb on - strandat 3953.017 kb on + strandat 3953.042 kb on + strandat 3953.076 kb on - strandat 3953.076 kb on - strandat 3953.076 kb on - strandat 3953.200 kb on + strandat 3953.325 kb on - strandat 3953.531 kb on + strand, within IAI46_18770at 3953.532 kb on - strand, within IAI46_18770at 3953.532 kb on - strand, within IAI46_18770at 3953.592 kb on - strand, within IAI46_18770at 3953.662 kb on + strand, within IAI46_18770at 3953.663 kb on - strand, within IAI46_18770at 3953.827 kb on - strand, within IAI46_18770at 3953.827 kb on - strand, within IAI46_18770

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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3,950,982 - IAI46_18760 0.53 +0.1
3,951,051 + IAI46_18760 0.57 +0.6
3,951,090 + IAI46_18760 0.58 -0.5
3,951,090 + IAI46_18760 0.58 -0.4
3,951,090 + IAI46_18760 0.58 +0.8
3,951,155 + IAI46_18760 0.62 +0.1
3,951,155 + IAI46_18760 0.62 -0.4
3,951,156 - IAI46_18760 0.62 -0.4
3,951,378 - IAI46_18760 0.73 +0.3
3,951,532 + IAI46_18760 0.80 +0.1
3,951,818 - -0.4
3,951,830 + -0.5
3,951,831 - +0.1
3,951,901 + +1.4
3,951,901 + -0.2
3,951,902 - +0.3
3,951,926 - -0.2
3,951,926 - -0.6
3,952,063 + +0.8
3,952,195 - IAI46_18765 0.25 +0.1
3,952,354 - IAI46_18765 0.43 +0.2
3,952,354 - IAI46_18765 0.43 -0.1
3,952,354 - IAI46_18765 0.43 +0.6
3,952,421 - IAI46_18765 0.51 +0.3
3,952,421 - IAI46_18765 0.51 +0.2
3,952,422 + IAI46_18765 0.51 +0.1
3,952,423 - IAI46_18765 0.51 -0.6
3,952,423 - IAI46_18765 0.51 +0.5
3,952,423 - IAI46_18765 0.51 -0.6
3,952,423 - IAI46_18765 0.51 -0.6
3,952,423 - IAI46_18765 0.51 -0.2
3,952,446 + IAI46_18765 0.54 -0.3
3,952,503 + IAI46_18765 0.60 +0.6
3,952,503 + IAI46_18765 0.60 -0.6
3,952,503 + IAI46_18765 0.60 +0.4
3,952,503 + IAI46_18765 0.60 +0.6
3,952,503 + IAI46_18765 0.60 -0.7
3,952,504 - IAI46_18765 0.60 +0.2
3,952,504 - IAI46_18765 0.60 -1.1
3,952,540 + IAI46_18765 0.65 +0.6
3,952,540 + IAI46_18765 0.65 -0.7
3,952,565 - IAI46_18765 0.67 -0.2
3,952,565 - IAI46_18765 0.67 -0.4
3,952,594 + IAI46_18765 0.71 -0.8
3,952,698 + IAI46_18765 0.83 +0.4
3,952,698 + IAI46_18765 0.83 +0.8
3,952,847 - +0.1
3,952,850 + +0.5
3,952,850 + +0.1
3,952,851 - +0.1
3,952,851 - +0.5
3,952,863 - -0.5
3,952,878 + -0.5
3,952,878 + +0.0
3,952,879 - +0.5
3,952,879 - +0.4
3,952,879 - -0.6
3,952,894 + -1.1
3,952,941 + -1.6
3,952,941 + +2.6
3,952,941 + +0.9
3,952,941 + +1.4
3,952,950 - -0.2
3,952,950 - +1.2
3,952,950 - +1.0
3,952,997 + -0.6
3,953,009 + +0.4
3,953,010 - +0.6
3,953,010 - -1.0
3,953,015 + +0.5
3,953,016 - -1.1
3,953,017 + -0.3
3,953,042 + -0.7
3,953,076 - +0.4
3,953,076 - +0.6
3,953,076 - +0.3
3,953,200 + +1.1
3,953,325 - -1.4
3,953,531 + IAI46_18770 0.35 -0.6
3,953,532 - IAI46_18770 0.35 -1.5
3,953,532 - IAI46_18770 0.35 -1.7
3,953,592 - IAI46_18770 0.43 -1.1
3,953,662 + IAI46_18770 0.53 -0.6
3,953,663 - IAI46_18770 0.53 -0.8
3,953,827 - IAI46_18770 0.76 -2.2
3,953,827 - IAI46_18770 0.76 -1.5

Or see this region's nucleotide sequence