Strain Fitness in Serratia liquefaciens MT49 around IAI46_18480

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18470 and IAI46_18475 are separated by 5 nucleotidesIAI46_18475 and IAI46_18480 are separated by 174 nucleotidesIAI46_18480 and IAI46_18485 are separated by 2 nucleotides IAI46_18470: IAI46_18470 - HAMP domain-containing protein, at 3,888,212 to 3,889,528 _18470 IAI46_18475: IAI46_18475 - response regulator transcription factor, at 3,889,534 to 3,890,214 _18475 IAI46_18480: IAI46_18480 - efflux RND transporter periplasmic adaptor subunit, at 3,890,389 to 3,891,582 _18480 IAI46_18485: IAI46_18485 - MacB family efflux pump subunit, at 3,891,585 to 3,893,537 _18485 Position (kb) 3890 3891 3892Strain fitness (log2 ratio) -2 -1 0 1 2at 3889.425 kb on + strandat 3889.437 kb on + strandat 3889.438 kb on - strandat 3889.440 kb on - strandat 3889.478 kb on - strandat 3889.478 kb on - strandat 3889.515 kb on - strandat 3889.614 kb on + strand, within IAI46_18475at 3889.646 kb on + strand, within IAI46_18475at 3889.647 kb on - strand, within IAI46_18475at 3889.768 kb on - strand, within IAI46_18475at 3889.908 kb on - strand, within IAI46_18475at 3889.926 kb on - strand, within IAI46_18475at 3890.252 kb on + strandat 3890.253 kb on - strandat 3890.289 kb on - strandat 3890.289 kb on - strandat 3890.292 kb on + strandat 3890.293 kb on - strandat 3890.293 kb on - strandat 3890.293 kb on - strandat 3890.309 kb on + strandat 3890.310 kb on - strandat 3890.368 kb on - strandat 3890.433 kb on + strandat 3890.433 kb on + strandat 3890.433 kb on + strandat 3890.433 kb on + strandat 3890.433 kb on + strandat 3890.434 kb on - strandat 3890.445 kb on + strandat 3890.497 kb on + strandat 3890.497 kb on + strandat 3890.497 kb on + strandat 3890.498 kb on - strandat 3890.498 kb on - strandat 3890.499 kb on + strandat 3890.499 kb on + strandat 3890.500 kb on - strandat 3890.500 kb on - strandat 3890.500 kb on - strandat 3890.500 kb on - strandat 3890.500 kb on - strandat 3890.500 kb on - strandat 3890.558 kb on + strand, within IAI46_18480at 3890.559 kb on - strand, within IAI46_18480at 3890.617 kb on + strand, within IAI46_18480at 3890.618 kb on - strand, within IAI46_18480at 3890.675 kb on + strand, within IAI46_18480at 3890.675 kb on + strand, within IAI46_18480at 3890.676 kb on - strand, within IAI46_18480at 3890.777 kb on - strand, within IAI46_18480at 3890.777 kb on - strand, within IAI46_18480at 3890.938 kb on + strand, within IAI46_18480at 3891.154 kb on + strand, within IAI46_18480at 3891.154 kb on + strand, within IAI46_18480at 3891.156 kb on + strand, within IAI46_18480at 3891.156 kb on + strand, within IAI46_18480at 3891.156 kb on + strand, within IAI46_18480at 3891.156 kb on + strand, within IAI46_18480at 3891.156 kb on + strand, within IAI46_18480at 3891.157 kb on - strand, within IAI46_18480at 3891.176 kb on + strand, within IAI46_18480at 3891.234 kb on + strand, within IAI46_18480at 3891.235 kb on - strand, within IAI46_18480at 3891.268 kb on + strand, within IAI46_18480at 3891.269 kb on - strand, within IAI46_18480at 3891.269 kb on - strand, within IAI46_18480at 3891.334 kb on + strand, within IAI46_18480at 3891.334 kb on + strand, within IAI46_18480at 3891.334 kb on + strand, within IAI46_18480at 3891.334 kb on + strand, within IAI46_18480at 3891.334 kb on + strand, within IAI46_18480at 3891.334 kb on + strand, within IAI46_18480at 3891.334 kb on + strand, within IAI46_18480at 3891.335 kb on - strand, within IAI46_18480at 3891.335 kb on - strand, within IAI46_18480at 3891.335 kb on - strand, within IAI46_18480at 3891.335 kb on - strand, within IAI46_18480at 3891.335 kb on - strand, within IAI46_18480at 3891.335 kb on - strand, within IAI46_18480at 3891.337 kb on - strand, within IAI46_18480at 3891.427 kb on - strand, within IAI46_18480at 3891.459 kb on + strand, within IAI46_18480at 3891.481 kb on - strandat 3891.874 kb on - strand, within IAI46_18485at 3891.881 kb on - strand, within IAI46_18485at 3891.927 kb on + strand, within IAI46_18485at 3891.927 kb on + strand, within IAI46_18485at 3891.927 kb on + strand, within IAI46_18485at 3891.928 kb on - strand, within IAI46_18485at 3891.928 kb on - strand, within IAI46_18485at 3892.008 kb on + strand, within IAI46_18485at 3892.052 kb on + strand, within IAI46_18485at 3892.053 kb on - strand, within IAI46_18485at 3892.175 kb on + strand, within IAI46_18485at 3892.200 kb on - strand, within IAI46_18485at 3892.238 kb on + strand, within IAI46_18485at 3892.239 kb on - strand, within IAI46_18485at 3892.239 kb on - strand, within IAI46_18485at 3892.239 kb on - strand, within IAI46_18485at 3892.353 kb on + strand, within IAI46_18485at 3892.427 kb on + strand, within IAI46_18485at 3892.556 kb on + strand, within IAI46_18485at 3892.573 kb on + strand, within IAI46_18485at 3892.574 kb on - strand, within IAI46_18485at 3892.574 kb on - strand, within IAI46_18485

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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3,889,425 + +1.7
3,889,437 + +0.7
3,889,438 - +0.2
3,889,440 - -0.1
3,889,478 - -0.6
3,889,478 - +0.3
3,889,515 - +0.0
3,889,614 + IAI46_18475 0.12 -0.0
3,889,646 + IAI46_18475 0.16 +0.6
3,889,647 - IAI46_18475 0.17 +0.1
3,889,768 - IAI46_18475 0.34 -0.1
3,889,908 - IAI46_18475 0.55 -0.9
3,889,926 - IAI46_18475 0.58 +0.2
3,890,252 + -0.7
3,890,253 - +0.1
3,890,289 - +0.3
3,890,289 - +0.3
3,890,292 + +0.3
3,890,293 - +0.9
3,890,293 - -1.7
3,890,293 - +0.4
3,890,309 + +0.8
3,890,310 - -0.4
3,890,368 - -0.3
3,890,433 + -0.0
3,890,433 + +0.5
3,890,433 + -0.3
3,890,433 + -0.6
3,890,433 + -0.4
3,890,434 - +0.1
3,890,445 + +0.6
3,890,497 + -0.4
3,890,497 + +0.4
3,890,497 + +0.5
3,890,498 - -0.1
3,890,498 - +0.4
3,890,499 + +0.5
3,890,499 + +0.1
3,890,500 - +0.3
3,890,500 - +0.6
3,890,500 - -0.0
3,890,500 - -0.5
3,890,500 - +0.1
3,890,500 - -0.8
3,890,558 + IAI46_18480 0.14 -0.4
3,890,559 - IAI46_18480 0.14 +0.1
3,890,617 + IAI46_18480 0.19 +1.5
3,890,618 - IAI46_18480 0.19 +0.7
3,890,675 + IAI46_18480 0.24 -0.4
3,890,675 + IAI46_18480 0.24 +0.7
3,890,676 - IAI46_18480 0.24 -0.1
3,890,777 - IAI46_18480 0.32 +0.7
3,890,777 - IAI46_18480 0.32 +0.7
3,890,938 + IAI46_18480 0.46 +1.3
3,891,154 + IAI46_18480 0.64 +0.5
3,891,154 + IAI46_18480 0.64 -0.8
3,891,156 + IAI46_18480 0.64 +0.4
3,891,156 + IAI46_18480 0.64 +0.4
3,891,156 + IAI46_18480 0.64 -0.0
3,891,156 + IAI46_18480 0.64 -2.6
3,891,156 + IAI46_18480 0.64 +0.2
3,891,157 - IAI46_18480 0.64 -0.8
3,891,176 + IAI46_18480 0.66 +2.0
3,891,234 + IAI46_18480 0.71 -0.3
3,891,235 - IAI46_18480 0.71 -0.4
3,891,268 + IAI46_18480 0.74 +0.2
3,891,269 - IAI46_18480 0.74 +0.1
3,891,269 - IAI46_18480 0.74 +2.0
3,891,334 + IAI46_18480 0.79 +0.3
3,891,334 + IAI46_18480 0.79 -0.0
3,891,334 + IAI46_18480 0.79 +0.2
3,891,334 + IAI46_18480 0.79 -2.1
3,891,334 + IAI46_18480 0.79 +1.2
3,891,334 + IAI46_18480 0.79 +0.6
3,891,334 + IAI46_18480 0.79 +0.9
3,891,335 - IAI46_18480 0.79 -0.1
3,891,335 - IAI46_18480 0.79 +0.3
3,891,335 - IAI46_18480 0.79 +0.5
3,891,335 - IAI46_18480 0.79 -1.3
3,891,335 - IAI46_18480 0.79 +1.1
3,891,335 - IAI46_18480 0.79 -1.3
3,891,337 - IAI46_18480 0.79 -0.2
3,891,427 - IAI46_18480 0.87 -1.8
3,891,459 + IAI46_18480 0.90 -0.7
3,891,481 - +0.6
3,891,874 - IAI46_18485 0.15 +1.7
3,891,881 - IAI46_18485 0.15 +0.5
3,891,927 + IAI46_18485 0.18 +0.5
3,891,927 + IAI46_18485 0.18 +0.7
3,891,927 + IAI46_18485 0.18 +1.0
3,891,928 - IAI46_18485 0.18 +0.5
3,891,928 - IAI46_18485 0.18 +0.7
3,892,008 + IAI46_18485 0.22 -0.6
3,892,052 + IAI46_18485 0.24 -0.3
3,892,053 - IAI46_18485 0.24 +0.4
3,892,175 + IAI46_18485 0.30 +0.6
3,892,200 - IAI46_18485 0.31 +1.2
3,892,238 + IAI46_18485 0.33 +0.4
3,892,239 - IAI46_18485 0.33 +0.2
3,892,239 - IAI46_18485 0.33 +0.1
3,892,239 - IAI46_18485 0.33 -0.3
3,892,353 + IAI46_18485 0.39 +1.3
3,892,427 + IAI46_18485 0.43 +0.4
3,892,556 + IAI46_18485 0.50 +1.1
3,892,573 + IAI46_18485 0.51 +0.8
3,892,574 - IAI46_18485 0.51 +0.9
3,892,574 - IAI46_18485 0.51 +0.7

Or see this region's nucleotide sequence