Experiment: dichromate 20 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_16940 and IAI46_16945 overlap by 18 nucleotides IAI46_16945 and IAI46_16950 are separated by 139 nucleotides
IAI46_16940: IAI46_16940 - LysR family transcriptional regulator, at 3,552,014 to 3,552,964
_16940
IAI46_16945: IAI46_16945 - DNA oxidative demethylase AlkB, at 3,552,947 to 3,553,594
_16945
IAI46_16950: IAI46_16950 - EamA family transporter RarD, at 3,553,734 to 3,554,627
_16950
Position (kb)
3552
3553
3554 Strain fitness (log2 ratio)
-2
-1
0
1 at 3551.974 kb on + strand at 3551.975 kb on - strand at 3552.008 kb on - strand at 3552.161 kb on - strand, within IAI46_16940 at 3552.193 kb on - strand, within IAI46_16940 at 3552.309 kb on + strand, within IAI46_16940 at 3552.309 kb on + strand, within IAI46_16940 at 3552.309 kb on + strand, within IAI46_16940 at 3552.310 kb on - strand, within IAI46_16940 at 3552.360 kb on - strand, within IAI46_16940 at 3552.360 kb on - strand, within IAI46_16940 at 3552.379 kb on - strand, within IAI46_16940 at 3552.379 kb on - strand, within IAI46_16940 at 3552.408 kb on + strand, within IAI46_16940 at 3552.409 kb on - strand, within IAI46_16940 at 3552.409 kb on - strand, within IAI46_16940 at 3552.437 kb on + strand, within IAI46_16940 at 3552.437 kb on + strand, within IAI46_16940 at 3552.439 kb on + strand, within IAI46_16940 at 3552.440 kb on - strand, within IAI46_16940 at 3552.558 kb on - strand, within IAI46_16940 at 3552.558 kb on - strand, within IAI46_16940 at 3552.617 kb on + strand, within IAI46_16940 at 3552.617 kb on + strand, within IAI46_16940 at 3552.618 kb on - strand, within IAI46_16940 at 3552.687 kb on + strand, within IAI46_16940 at 3552.687 kb on + strand, within IAI46_16940 at 3552.688 kb on - strand, within IAI46_16940 at 3552.688 kb on - strand, within IAI46_16940 at 3552.768 kb on - strand, within IAI46_16940 at 3552.842 kb on + strand, within IAI46_16940 at 3552.866 kb on + strand, within IAI46_16940 at 3552.867 kb on - strand, within IAI46_16940 at 3552.881 kb on + strand at 3552.882 kb on - strand at 3552.907 kb on + strand at 3552.948 kb on + strand at 3552.963 kb on - strand at 3552.976 kb on + strand at 3552.976 kb on + strand at 3553.002 kb on + strand at 3553.105 kb on + strand, within IAI46_16945 at 3553.435 kb on + strand, within IAI46_16945 at 3553.436 kb on - strand, within IAI46_16945 at 3553.609 kb on - strand at 3553.612 kb on - strand at 3553.676 kb on + strand at 3553.739 kb on + strand at 3553.788 kb on + strand at 3553.788 kb on + strand at 3553.788 kb on + strand at 3553.788 kb on + strand at 3553.789 kb on - strand at 3553.789 kb on - strand at 3553.789 kb on - strand at 3553.789 kb on - strand at 3553.792 kb on - strand at 3553.794 kb on + strand at 3553.794 kb on + strand at 3553.794 kb on + strand at 3553.795 kb on - strand at 3553.795 kb on - strand at 3553.802 kb on + strand at 3553.802 kb on + strand at 3553.877 kb on + strand, within IAI46_16950 at 3553.878 kb on - strand, within IAI46_16950 at 3553.927 kb on + strand, within IAI46_16950 at 3554.163 kb on + strand, within IAI46_16950 at 3554.220 kb on + strand, within IAI46_16950 at 3554.226 kb on - strand, within IAI46_16950 at 3554.278 kb on + strand, within IAI46_16950 at 3554.412 kb on + strand, within IAI46_16950 at 3554.412 kb on + strand, within IAI46_16950 at 3554.413 kb on - strand, within IAI46_16950 at 3554.413 kb on - strand, within IAI46_16950 at 3554.415 kb on - strand, within IAI46_16950 at 3554.463 kb on + strand, within IAI46_16950 at 3554.463 kb on + strand, within IAI46_16950 at 3554.538 kb on + strand at 3554.538 kb on + strand at 3554.538 kb on + strand at 3554.539 kb on - strand at 3554.539 kb on - strand at 3554.540 kb on + strand at 3554.541 kb on - strand at 3554.547 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic remove 3,551,974 + -0.0 3,551,975 - +0.7 3,552,008 - -0.1 3,552,161 - IAI46_16940 0.15 +0.6 3,552,193 - IAI46_16940 0.19 -0.8 3,552,309 + IAI46_16940 0.31 -0.1 3,552,309 + IAI46_16940 0.31 +0.5 3,552,309 + IAI46_16940 0.31 -0.1 3,552,310 - IAI46_16940 0.31 +0.1 3,552,360 - IAI46_16940 0.36 -0.1 3,552,360 - IAI46_16940 0.36 -0.0 3,552,379 - IAI46_16940 0.38 -0.8 3,552,379 - IAI46_16940 0.38 -0.4 3,552,408 + IAI46_16940 0.41 +0.2 3,552,409 - IAI46_16940 0.42 +0.4 3,552,409 - IAI46_16940 0.42 -0.5 3,552,437 + IAI46_16940 0.44 -0.8 3,552,437 + IAI46_16940 0.44 +0.4 3,552,439 + IAI46_16940 0.45 -1.0 3,552,440 - IAI46_16940 0.45 +0.0 3,552,558 - IAI46_16940 0.57 -0.0 3,552,558 - IAI46_16940 0.57 +0.1 3,552,617 + IAI46_16940 0.63 +1.1 3,552,617 + IAI46_16940 0.63 +1.0 3,552,618 - IAI46_16940 0.64 -0.0 3,552,687 + IAI46_16940 0.71 +0.2 3,552,687 + IAI46_16940 0.71 -0.5 3,552,688 - IAI46_16940 0.71 -1.3 3,552,688 - IAI46_16940 0.71 -1.5 3,552,768 - IAI46_16940 0.79 +0.4 3,552,842 + IAI46_16940 0.87 -0.2 3,552,866 + IAI46_16940 0.90 +1.4 3,552,867 - IAI46_16940 0.90 +1.5 3,552,881 + -0.6 3,552,882 - +0.5 3,552,907 + +0.4 3,552,948 + -0.2 3,552,963 - +1.5 3,552,976 + +0.5 3,552,976 + +1.2 3,553,002 + +0.5 3,553,105 + IAI46_16945 0.24 -0.6 3,553,435 + IAI46_16945 0.75 -0.5 3,553,436 - IAI46_16945 0.75 -0.7 3,553,609 - -0.4 3,553,612 - -0.2 3,553,676 + -0.4 3,553,739 + -0.5 3,553,788 + -0.2 3,553,788 + -1.3 3,553,788 + +0.2 3,553,788 + -0.4 3,553,789 - -0.2 3,553,789 - -0.8 3,553,789 - +0.7 3,553,789 - +0.4 3,553,792 - +1.5 3,553,794 + +0.4 3,553,794 + -0.5 3,553,794 + +0.4 3,553,795 - +0.1 3,553,795 - +0.4 3,553,802 + -0.3 3,553,802 + +0.5 3,553,877 + IAI46_16950 0.16 -0.2 3,553,878 - IAI46_16950 0.16 +0.3 3,553,927 + IAI46_16950 0.22 +0.7 3,554,163 + IAI46_16950 0.48 +1.2 3,554,220 + IAI46_16950 0.54 +0.1 3,554,226 - IAI46_16950 0.55 +0.5 3,554,278 + IAI46_16950 0.61 +0.6 3,554,412 + IAI46_16950 0.76 +1.1 3,554,412 + IAI46_16950 0.76 +0.3 3,554,413 - IAI46_16950 0.76 +0.3 3,554,413 - IAI46_16950 0.76 -0.2 3,554,415 - IAI46_16950 0.76 +0.7 3,554,463 + IAI46_16950 0.82 -1.8 3,554,463 + IAI46_16950 0.82 -0.8 3,554,538 + +0.9 3,554,538 + -0.8 3,554,538 + -0.5 3,554,539 - -1.0 3,554,539 - +0.3 3,554,540 + +0.9 3,554,541 - +1.1 3,554,547 - -0.3
Or see this region's nucleotide sequence